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Oryza sativa
cluster # 7793 cluster # 7793       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7793#0 length = 1209 sequences # 2  
consensus_7793#1 length = 546 sequences # 3  

consensusID : consensus_7793#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1209
fasta sequence
                              [TTTTTTAAACTAGGAAAAGAATCATAATTACGTCTATTGAAATTGTGTACAAATTGGGACATGTAAAATCAACAGTTTGCAAGCACTTCTGTCTATTAGAATTTTGCATGTAGTAAGTATAATTCACGGTTCTTCTGTTGTAGATTTGAACCGTTATTATCATCATCAAGGGTATTAGTAGTATATAAATATATGCTACTACCATTCTGTAATAGTTCACTTATCAATCATAACCAAAATTTAAATTTTTAAACTTAATTATATAGGGGTCTTTTTAATCGTGGTTAATTTTTCAGACTTGGCTTTAAAACTGATAATGACTCAAACATACAAGTTTTTTTTTAGTCTCTTCATTTCTCTATGGCTTATTGAGCTCAACTGATCACGGCTAACACAGGCAGCGAAAGAACTACTATATCACTATCAATAACACTGTTTTACGATATGTGCAACTTATCACAGAAAGCACACGAGAACTGATGTTTCACATCACACCAGTAAAAACAGGAACCAGCTTTTAACAACTGGACTTGGTAAATCTGTCTCGCAAGACAAGACATGCTGAGAGAGAAGGGGTTCCTCTTGAGGATATCTCCTCAATTTTACGTGTCATAAAAGATCATGTTAAAAACAAATAACAAATATGAGTGTCACATCACGCCTGTCCATAGCTGTTCAAACTTACAGGTTAATTTGCTGAGTGCTATATCGAGTATTTTTTAAACTATTTATAACTTCTTAAGTACTCCTGCCATCCTAAAAAGAGACAATCTATTATTGATACATCCGAGTACAATGAATCTAGATATACCCTACGTCCAGACTCATTGTATTAAAATATATCGCATCCTAGTACTATGTCGTCTTTTTTTTTAAACGAAGGGAGTAATTGAGTAAGAAGGGAGGGGACGAGAGACATTTGTGCTGTAATATTCTGATGCTCTTCATTTCATCATATATATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGTAGCACTCAAATCCATCCACCTTCCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAGCCAAAAAGGACGAGAGAGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAACACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCATTTCTACTCCTTCAGTCCA]

[+] EMBL CF308968             [TTTTTTAAACTAGGAAAAGAATCATAATTACGTCTATTGAAATTGTGTACAAATTGGGACATGTAAAATCAACAGTTTGCAAGCACTTCTGTCTATTAGAATTTTGCATGTAGTAAGTATAATTCACGGTTCTTCTGTTGTAGATTTGAACCGTTATTATCATCATCAAGGGTATTAGTAGTATATAAATATATGCTACTACCATTCTGTAATAGTTCACTTATCAATCATAACCAAAATTTAAATTTTTAAACTTAATTATATAGGGGTCTTTTTAATCGTGGTTAATTTTTCAGACTTGGCTTTAAAACTGATAATGACTCAAACATACAAGTTTTTTTTTAGTCTCTTCATTTCTCTATGGCTTATTGAGCTCAACTGATCACGGCTAACACAGGCAGCGAAAGAACTACTATATCACTATCAATAACACTGTTTTACGATATGTGCAACTTATCACAGAAAGCACACGAGAACTGATGTTTCACATCACACCAGTAAAAACAGGAACCAGCTTTTAACAACTGGACTTGGTAAATCTGTCTCGCAAGACAAGACATGCTGAGAGAGAAGGGGTTCCTCTTGAGGATATCTCCTCAATTTTACGTGTCATAAAAGATCATGTTAAAAACAAATAACAAATATGAGTGTCACATCACGCCTGTCCATAGCTGTTCAAACTTACAGGTTAATTTGCTGAGTGCTATATCGAGTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CF308967             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AAGACATGCTGAGAGAGAAGGGGTTCCTCTTGAGGATATCTCCTCAATTTTACGTGTCATAAAAGATCATGTTAAAAACAAATAACAAATATGAGTGTCACATCACGCCTGTCCATAGCTGTTCAAACTTACAGGTTAATTTGCTGAGTGCTATATCGAGTATTTTTTAAACTATTTATAACTTCTTAAGTACTCCTGCCATCCTAAAAAGAGACAATCTATTATTGATACATCCGAGTACAATGAATCTAGATATACCCTACGTCCAGACTCATTGTATTAAAATATATCGCATCCTAGTACTATGTCGTCTTTTTTTTTAAACGAAGGGAGTAATTGAGTAAGAAGGGAGGGGACGAGAGACATTTGTGCTGTAATATTCTGATGCTCTTCATTTCATCATATATATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGTAGCACTCAAATCCATCCACCTTCCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAGCCAAAAAGGACGAGAGAGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAACACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCATTTCTACTCCTTCAGTCCA]


>consensus_7793#0 TTTTTTAAACTAGGAAAAGAATCATAATTACGTCTATTGAAATTGTGTACAAATTGGGAC ATGTAAAATCAACAGTTTGCAAGCACTTCTGTCTATTAGAATTTTGCATGTAGTAAGTAT AATTCACGGTTCTTCTGTTGTAGATTTGAACCGTTATTATCATCATCAAGGGTATTAGTA GTATATAAATATATGCTACTACCATTCTGTAATAGTTCACTTATCAATCATAACCAAAAT TTAAATTTTTAAACTTAATTATATAGGGGTCTTTTTAATCGTGGTTAATTTTTCAGACTT GGCTTTAAAACTGATAATGACTCAAACATACAAGTTTTTTTTTAGTCTCTTCATTTCTCT ATGGCTTATTGAGCTCAACTGATCACGGCTAACACAGGCAGCGAAAGAACTACTATATCA CTATCAATAACACTGTTTTACGATATGTGCAACTTATCACAGAAAGCACACGAGAACTGA TGTTTCACATCACACCAGTAAAAACAGGAACCAGCTTTTAACAACTGGACTTGGTAAATC TGTCTCGCAAGACAAGACATGCTGAGAGAGAAGGGGTTCCTCTTGAGGATATCTCCTCAA TTTTACGTGTCATAAAAGATCATGTTAAAAACAAATAACAAATATGAGTGTCACATCACG CCTGTCCATAGCTGTTCAAACTTACAGGTTAATTTGCTGAGTGCTATATCGAGTATTTTT TAAACTATTTATAACTTCTTAAGTACTCCTGCCATCCTAAAAAGAGACAATCTATTATTG ATACATCCGAGTACAATGAATCTAGATATACCCTACGTCCAGACTCATTGTATTAAAATA TATCGCATCCTAGTACTATGTCGTCTTTTTTTTTAAACGAAGGGAGTAATTGAGTAAGAA GGGAGGGGACGAGAGACATTTGTGCTGTAATATTCTGATGCTCTTCATTTCATCATATAT ATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGTAGCACTCAAATCCATC CACCTTCCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAGCCAAAAAGGACGAGAG AGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAA CACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCATTTCTACTCC TTCAGTCCA



consensusID : consensus_7793#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 546
fasta sequence
                              [TTTTTTTTTTTTTTTGCTGTAATATTCTGATGCTCTTCATTTCATCATATATATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGTAGCACTCAAATCCATCCACCTT-CCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAG-CCAAAAAGGACGAGAGAGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAACACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCAGTGTGTGCACACAGAACAGTGTACAGGAGAGCTACGATAATAACTAAAAGATAATGCTCCCTCTCTAATTAATCACCCCTCCCCTTAATTACATATATTTATATACTACTAATACCCTTGATGATGATAATAATAATAATAATAATCTTTCTCCGATCCTAACCCAAAACCCCTAGGAGCAGAGCAGAGCAGTAGCAGAGAGAGAGAGAGAGATAGCTGTCGGGAAATGTGGGTTGAAGCCGTCGGCGAAATCACCACTTGGGG]

[-] EMBL AU057836             [TTTTTTTTTTTTTTTGCTGTAATATTCTGATGCTCTTCATTTCATCATATATATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGTAGCACTCAAATCCATCCACCTT CCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAG CCAAAAAGGACGAGAGAGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAACACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCAGTGTGTGCACACAGAACAGTGTACAGGAGAGCTACGATAATAACTAAAAGATAATGCTCCCTCTCTAATTAATCACCCCTCCCCTTAATTACATATATTTATATACTACTAATACCCTTGATGATGATAATAATAATAATAATAATCTTTCTCCGATCCTAACCCAAAACCCCTAGGAGCAGAGCAGAGCAGTAGCAGAGAGAGAGAGAGAGATAGCTGTCGG                                         ]
[+] EMBL CF309541             [     TTTTTTTTGTGCTGTAATATTCTGATGCTCTTCATTTCATCATATATATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGGAGCACTCAAATCCGTCCACCTT CCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAG CCAAAAAGGACGAGAGAGCACAAGGGCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACTACCCAACACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCAGTGTGTGCACACAGAACAGTGTACAGGAGAGCTACGATAATAACTAAAAGATAATGCTCCCTCTCTAATTAATCACCCCTCCCCTTAATTACATATATTTATATACTACTAATACCCTTGATGATGATAATAATAATAATAATAATCTTTCTCCGATCCTAACCCAAAACCCCTAGGAGCAGAGCAGAGCAGTAGCAGAGAGAGAGAGAGAGATAGCTGTCGGGAAATGTGGGTTGAAGCCGTCGGCGAAATCACCACTTGGGG]
[-] EMBL AU057835             [                                                                               ATATACAATTACACGGTAGCACTCAAATCCATCCACCTTCCCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAGCCCAAAAAGGACGAGAGAGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAACACAAAGCGCCTCCCAAAAAAACCAGAGGAC CGCGCGCGCGCACTGTCAGTGTGTGCACACAGAACAGTGTACAGGAGAGCTACGATAATAACTAAAAGATAATGCTCCCTCTCTAATTAATCACCCCTCCCCTTAATTACATATATTTATATACTACTAATACCCTTGATGATGATAATAATAATAATAATAATCTTTCTCCGATCCTAACCCAAAACCCCTAGGAGCAGAGCAGAGCAGTAGCAGAGAGAGAGAGAGAGATAGCTGTCGG                                         ]


>consensus_7793#1 TTTTTTTTTTTTTTTGCTGTAATATTCTGATGCTCTTCATTTCATCATATATATTCTTGT ACATAGATAATCAGAAGCCATATACAATTACACGGTAGCACTCAAATCCATCCACCTTCC TGTGCACCCACCCAGGTAGCATAGCAACCACCATAGCCAAAAAGGACGAGAGAGCACAAG GCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAACACAAAGC GCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCAGTGTGTGCACACAGAACA GTGTACAGGAGAGCTACGATAATAACTAAAAGATAATGCTCCCTCTCTAATTAATCACCC CTCCCCTTAATTACATATATTTATATACTACTAATACCCTTGATGATGATAATAATAATA ATAATAATCTTTCTCCGATCCTAACCCAAAACCCCTAGGAGCAGAGCAGAGCAGTAGCAG AGAGAGAGAGAGAGATAGCTGTCGGGAAATGTGGGTTGAAGCCGTCGGCGAAATCACCAC TTGGGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7793#0      TTTTTTAAACTAGGAAAAGAATCATAATTACGTCTATTGAAATTGTGTACAAATTGGGAC 60
consensus_7793#1      ------------------------------------------------------------
                                                                                  

consensus_7793#0      ATGTAAAATCAACAGTTTGCAAGCACTTCTGTCTATTAGAATTTTGCATGTAGTAAGTAT 120
consensus_7793#1      ------------------------------------------------------------
                                                                                  

consensus_7793#0      AATTCACGGTTCTTCTGTTGTAGATTTGAACCGTTATTATCATCATCAAGGGTATTAGTA 180
consensus_7793#1      ------------------------------------------------------------
                                                                                  

consensus_7793#0      GTATATAAATATATGCTACTACCATTCTGTAATAGTTCACTTATCAATCATAACCAAAAT 240
consensus_7793#1      ------------------------------------------------------------
                                                                                  

consensus_7793#0      TTAAATTTTTAAACTTAATTATATAGGGGTCTTTTTAATCGTGGTTAATTTTTCAGACTT 300
consensus_7793#1      ------------------------------------------------------------
                                                                                  

consensus_7793#0      GGCTTTAAAACTGATAATGACTCAAACATACAAGTTTTTTTTTAGTCTCTTCATTTCTCT 360
consensus_7793#1      ------------------------------------------------------------
                                                                                  

consensus_7793#0      ATGGCTTATTGAGCTCAACTGATCACGGCTAACACAGGCAGCGAAAGAACTACTATATCA 420
consensus_7793#1      ------------------------------------------------------------
                                                                                  

consensus_7793#0      CTATCAATAACACTGTTTTACGATATGTGCAACTTATCACAGAAAGCACACGAGAACTGA 480
consensus_7793#1      ------------------------------------------------------------
                                                                                  

consensus_7793#0      TGTTTCACATCACACCAGTAAAAACAGGAACCAGCTTTTAACAACTGGACTTGGTAAATC 540
consensus_7793#1      ------------------------------------------------------------
                                                                                  

consensus_7793#0      TGTCTCGCAAGACAAGACATGCTGAGAGAGAAGGGGTTCCTCTTGAGGATATCTCCTCAA 600
consensus_7793#1      ------------------------------------------------------------
                                                                                  

consensus_7793#0      TTTTACGTGTCATAAAAGATCATGTTAAAAACAAATAACAAATATGAGTGTCACATCACG 660
consensus_7793#1      ------------------------------------------------------------
                                                                                  

consensus_7793#0      CCTGTCCATAGCTGTTCAAACTTACAGGTTAATTTGCTGAGTGCTATATCGAGTATTTTT 720
consensus_7793#1      ------------------------------------------------------------
                                                                                  

consensus_7793#0      TAAACTATTTATAACTTCTTAAGTACTCCTGCCATCCTAAAAAGAGACAATCTATTATTG 780
consensus_7793#1      ------------------------------------------------------------
                                                                                  

consensus_7793#0      ATACATCCGAGTACAATGAATCTAGATATACCCTACGTCCAGACTCATTGTATTAAAATA 840
consensus_7793#1      ------------------------------------------------------------
                                                                                  

consensus_7793#0      TATCGCATCCTAGTACTATGTCGTCTTTTTTTTTAAACGAAGGGAGTAATTGAGTAAGAA 900
consensus_7793#1      ------------------------------------------------------------
                                                                                  

consensus_7793#0      GGGAGGGGACGAGAGACATTTGTGCTGTAATATTCTGATGCTCTTCATTTCATCATATAT 960
consensus_7793#1      --------TTTTTTTTTTTTTTTGCTGTAATATTCTGATGCTCTTCATTTCATCATATAT 52
                                        *** **************************************

consensus_7793#0      ATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGTAGCACTCAAATCCATC 1020
consensus_7793#1      ATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGTAGCACTCAAATCCATC 112
                      ************************************************************

consensus_7793#0      CACCTTCCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAGCCAAAAAGGACGAGAG 1080
consensus_7793#1      CACCTTCCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAGCCAAAAAGGACGAGAG 172
                      ************************************************************

consensus_7793#0      AGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAA 1140
consensus_7793#1      AGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAA 232
                      ************************************************************

consensus_7793#0      CACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCATTTCTACTCC 1200
consensus_7793#1      CACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCAGTG-TGTGCA 291
                      ************************************************** *  *   * 

consensus_7793#0      TTCAGTCCA--------------------------------------------------- 1209
consensus_7793#1      CACAGAACAGTGTACAGGAGAGCTACGATAATAACTAAAAGATAATGCTCCCTCTCTAAT 351
                        ***  **                                                   

consensus_7793#0      ------------------------------------------------------------
consensus_7793#1      TAATCACCCCTCCCCTTAATTACATATATTTATATACTACTAATACCCTTGATGATGATA 411
                                                                                  

consensus_7793#0      ------------------------------------------------------------
consensus_7793#1      ATAATAATAATAATAATCTTTCTCCGATCCTAACCCAAAACCCCTAGGAGCAGAGCAGAG 471
                                                                                  

consensus_7793#0      ------------------------------------------------------------
consensus_7793#1      CAGTAGCAGAGAGAGAGAGAGAGATAGCTGTCGGGAAATGTGGGTTGAAGCCGTCGGCGA 531
                                                                                  

consensus_7793#0      ---------------
consensus_7793#1      AATCACCACTTGGGG 546
                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)