These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7793#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1209 fasta sequence [TTTTTTAAACTAGGAAAAGAATCATAATTACGTCTATTGAAATTGTGTACAAATTGGGACATGTAAAATCAACAGTTTGCAAGCACTTCTGTCTATTAGAATTTTGCATGTAGTAAGTATAATTCACGGTTCTTCTGTTGTAGATTTGAACCGTTATTATCATCATCAAGGGTATTAGTAGTATATAAATATATGCTACTACCATTCTGTAATAGTTCACTTATCAATCATAACCAAAATTTAAATTTTTAAACTTAATTATATAGGGGTCTTTTTAATCGTGGTTAATTTTTCAGACTTGGCTTTAAAACTGATAATGACTCAAACATACAAGTTTTTTTTTAGTCTCTTCATTTCTCTATGGCTTATTGAGCTCAACTGATCACGGCTAACACAGGCAGCGAAAGAACTACTATATCACTATCAATAACACTGTTTTACGATATGTGCAACTTATCACAGAAAGCACACGAGAACTGATGTTTCACATCACACCAGTAAAAACAGGAACCAGCTTTTAACAACTGGACTTGGTAAATCTGTCTCGCAAGACAAGACATGCTGAGAGAGAAGGGGTTCCTCTTGAGGATATCTCCTCAATTTTACGTGTCATAAAAGATCATGTTAAAAACAAATAACAAATATGAGTGTCACATCACGCCTGTCCATAGCTGTTCAAACTTACAGGTTAATTTGCTGAGTGCTATATCGAGTATTTTTTAAACTATTTATAACTTCTTAAGTACTCCTGCCATCCTAAAAAGAGACAATCTATTATTGATACATCCGAGTACAATGAATCTAGATATACCCTACGTCCAGACTCATTGTATTAAAATATATCGCATCCTAGTACTATGTCGTCTTTTTTTTTAAACGAAGGGAGTAATTGAGTAAGAAGGGAGGGGACGAGAGACATTTGTGCTGTAATATTCTGATGCTCTTCATTTCATCATATATATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGTAGCACTCAAATCCATCCACCTTCCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAGCCAAAAAGGACGAGAGAGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAACACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCATTTCTACTCCTTCAGTCCA] [+] EMBL CF308968 [TTTTTTAAACTAGGAAAAGAATCATAATTACGTCTATTGAAATTGTGTACAAATTGGGACATGTAAAATCAACAGTTTGCAAGCACTTCTGTCTATTAGAATTTTGCATGTAGTAAGTATAATTCACGGTTCTTCTGTTGTAGATTTGAACCGTTATTATCATCATCAAGGGTATTAGTAGTATATAAATATATGCTACTACCATTCTGTAATAGTTCACTTATCAATCATAACCAAAATTTAAATTTTTAAACTTAATTATATAGGGGTCTTTTTAATCGTGGTTAATTTTTCAGACTTGGCTTTAAAACTGATAATGACTCAAACATACAAGTTTTTTTTTAGTCTCTTCATTTCTCTATGGCTTATTGAGCTCAACTGATCACGGCTAACACAGGCAGCGAAAGAACTACTATATCACTATCAATAACACTGTTTTACGATATGTGCAACTTATCACAGAAAGCACACGAGAACTGATGTTTCACATCACACCAGTAAAAACAGGAACCAGCTTTTAACAACTGGACTTGGTAAATCTGTCTCGCAAGACAAGACATGCTGAGAGAGAAGGGGTTCCTCTTGAGGATATCTCCTCAATTTTACGTGTCATAAAAGATCATGTTAAAAACAAATAACAAATATGAGTGTCACATCACGCCTGTCCATAGCTGTTCAAACTTACAGGTTAATTTGCTGAGTGCTATATCGAGTATT ] [-] EMBL CF308967 [ AAGACATGCTGAGAGAGAAGGGGTTCCTCTTGAGGATATCTCCTCAATTTTACGTGTCATAAAAGATCATGTTAAAAACAAATAACAAATATGAGTGTCACATCACGCCTGTCCATAGCTGTTCAAACTTACAGGTTAATTTGCTGAGTGCTATATCGAGTATTTTTTAAACTATTTATAACTTCTTAAGTACTCCTGCCATCCTAAAAAGAGACAATCTATTATTGATACATCCGAGTACAATGAATCTAGATATACCCTACGTCCAGACTCATTGTATTAAAATATATCGCATCCTAGTACTATGTCGTCTTTTTTTTTAAACGAAGGGAGTAATTGAGTAAGAAGGGAGGGGACGAGAGACATTTGTGCTGTAATATTCTGATGCTCTTCATTTCATCATATATATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGTAGCACTCAAATCCATCCACCTTCCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAGCCAAAAAGGACGAGAGAGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAACACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCATTTCTACTCCTTCAGTCCA] consensusID : consensus_7793#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 546 fasta sequence [TTTTTTTTTTTTTTTGCTGTAATATTCTGATGCTCTTCATTTCATCATATATATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGTAGCACTCAAATCCATCCACCTT-CCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAG-CCAAAAAGGACGAGAGAGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAACACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCAGTGTGTGCACACAGAACAGTGTACAGGAGAGCTACGATAATAACTAAAAGATAATGCTCCCTCTCTAATTAATCACCCCTCCCCTTAATTACATATATTTATATACTACTAATACCCTTGATGATGATAATAATAATAATAATAATCTTTCTCCGATCCTAACCCAAAACCCCTAGGAGCAGAGCAGAGCAGTAGCAGAGAGAGAGAGAGAGATAGCTGTCGGGAAATGTGGGTTGAAGCCGTCGGCGAAATCACCACTTGGGG] [-] EMBL AU057836 [TTTTTTTTTTTTTTTGCTGTAATATTCTGATGCTCTTCATTTCATCATATATATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGTAGCACTCAAATCCATCCACCTT CCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAG CCAAAAAGGACGAGAGAGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAACACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCAGTGTGTGCACACAGAACAGTGTACAGGAGAGCTACGATAATAACTAAAAGATAATGCTCCCTCTCTAATTAATCACCCCTCCCCTTAATTACATATATTTATATACTACTAATACCCTTGATGATGATAATAATAATAATAATAATCTTTCTCCGATCCTAACCCAAAACCCCTAGGAGCAGAGCAGAGCAGTAGCAGAGAGAGAGAGAGAGATAGCTGTCGG ] [+] EMBL CF309541 [ TTTTTTTTGTGCTGTAATATTCTGATGCTCTTCATTTCATCATATATATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGGAGCACTCAAATCCGTCCACCTT CCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAG CCAAAAAGGACGAGAGAGCACAAGGGCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACTACCCAACACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCAGTGTGTGCACACAGAACAGTGTACAGGAGAGCTACGATAATAACTAAAAGATAATGCTCCCTCTCTAATTAATCACCCCTCCCCTTAATTACATATATTTATATACTACTAATACCCTTGATGATGATAATAATAATAATAATAATCTTTCTCCGATCCTAACCCAAAACCCCTAGGAGCAGAGCAGAGCAGTAGCAGAGAGAGAGAGAGAGATAGCTGTCGGGAAATGTGGGTTGAAGCCGTCGGCGAAATCACCACTTGGGG] [-] EMBL AU057835 [ ATATACAATTACACGGTAGCACTCAAATCCATCCACCTTCCCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAGCCCAAAAAGGACGAGAGAGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAACACAAAGCGCCTCCCAAAAAAACCAGAGGAC CGCGCGCGCGCACTGTCAGTGTGTGCACACAGAACAGTGTACAGGAGAGCTACGATAATAACTAAAAGATAATGCTCCCTCTCTAATTAATCACCCCTCCCCTTAATTACATATATTTATATACTACTAATACCCTTGATGATGATAATAATAATAATAATAATCTTTCTCCGATCCTAACCCAAAACCCCTAGGAGCAGAGCAGAGCAGTAGCAGAGAGAGAGAGAGAGATAGCTGTCGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7793#0 TTTTTTAAACTAGGAAAAGAATCATAATTACGTCTATTGAAATTGTGTACAAATTGGGAC 60 consensus_7793#1 ------------------------------------------------------------ consensus_7793#0 ATGTAAAATCAACAGTTTGCAAGCACTTCTGTCTATTAGAATTTTGCATGTAGTAAGTAT 120 consensus_7793#1 ------------------------------------------------------------ consensus_7793#0 AATTCACGGTTCTTCTGTTGTAGATTTGAACCGTTATTATCATCATCAAGGGTATTAGTA 180 consensus_7793#1 ------------------------------------------------------------ consensus_7793#0 GTATATAAATATATGCTACTACCATTCTGTAATAGTTCACTTATCAATCATAACCAAAAT 240 consensus_7793#1 ------------------------------------------------------------ consensus_7793#0 TTAAATTTTTAAACTTAATTATATAGGGGTCTTTTTAATCGTGGTTAATTTTTCAGACTT 300 consensus_7793#1 ------------------------------------------------------------ consensus_7793#0 GGCTTTAAAACTGATAATGACTCAAACATACAAGTTTTTTTTTAGTCTCTTCATTTCTCT 360 consensus_7793#1 ------------------------------------------------------------ consensus_7793#0 ATGGCTTATTGAGCTCAACTGATCACGGCTAACACAGGCAGCGAAAGAACTACTATATCA 420 consensus_7793#1 ------------------------------------------------------------ consensus_7793#0 CTATCAATAACACTGTTTTACGATATGTGCAACTTATCACAGAAAGCACACGAGAACTGA 480 consensus_7793#1 ------------------------------------------------------------ consensus_7793#0 TGTTTCACATCACACCAGTAAAAACAGGAACCAGCTTTTAACAACTGGACTTGGTAAATC 540 consensus_7793#1 ------------------------------------------------------------ consensus_7793#0 TGTCTCGCAAGACAAGACATGCTGAGAGAGAAGGGGTTCCTCTTGAGGATATCTCCTCAA 600 consensus_7793#1 ------------------------------------------------------------ consensus_7793#0 TTTTACGTGTCATAAAAGATCATGTTAAAAACAAATAACAAATATGAGTGTCACATCACG 660 consensus_7793#1 ------------------------------------------------------------ consensus_7793#0 CCTGTCCATAGCTGTTCAAACTTACAGGTTAATTTGCTGAGTGCTATATCGAGTATTTTT 720 consensus_7793#1 ------------------------------------------------------------ consensus_7793#0 TAAACTATTTATAACTTCTTAAGTACTCCTGCCATCCTAAAAAGAGACAATCTATTATTG 780 consensus_7793#1 ------------------------------------------------------------ consensus_7793#0 ATACATCCGAGTACAATGAATCTAGATATACCCTACGTCCAGACTCATTGTATTAAAATA 840 consensus_7793#1 ------------------------------------------------------------ consensus_7793#0 TATCGCATCCTAGTACTATGTCGTCTTTTTTTTTAAACGAAGGGAGTAATTGAGTAAGAA 900 consensus_7793#1 ------------------------------------------------------------ consensus_7793#0 GGGAGGGGACGAGAGACATTTGTGCTGTAATATTCTGATGCTCTTCATTTCATCATATAT 960 consensus_7793#1 --------TTTTTTTTTTTTTTTGCTGTAATATTCTGATGCTCTTCATTTCATCATATAT 52 *** ************************************** consensus_7793#0 ATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGTAGCACTCAAATCCATC 1020 consensus_7793#1 ATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGTAGCACTCAAATCCATC 112 ************************************************************ consensus_7793#0 CACCTTCCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAGCCAAAAAGGACGAGAG 1080 consensus_7793#1 CACCTTCCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAGCCAAAAAGGACGAGAG 172 ************************************************************ consensus_7793#0 AGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAA 1140 consensus_7793#1 AGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAA 232 ************************************************************ consensus_7793#0 CACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCATTTCTACTCC 1200 consensus_7793#1 CACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCAGTG-TGTGCA 291 ************************************************** * * * consensus_7793#0 TTCAGTCCA--------------------------------------------------- 1209 consensus_7793#1 CACAGAACAGTGTACAGGAGAGCTACGATAATAACTAAAAGATAATGCTCCCTCTCTAAT 351 *** ** consensus_7793#0 ------------------------------------------------------------ consensus_7793#1 TAATCACCCCTCCCCTTAATTACATATATTTATATACTACTAATACCCTTGATGATGATA 411 consensus_7793#0 ------------------------------------------------------------ consensus_7793#1 ATAATAATAATAATAATCTTTCTCCGATCCTAACCCAAAACCCCTAGGAGCAGAGCAGAG 471 consensus_7793#0 ------------------------------------------------------------ consensus_7793#1 CAGTAGCAGAGAGAGAGAGAGAGATAGCTGTCGGGAAATGTGGGTTGAAGCCGTCGGCGA 531 consensus_7793#0 --------------- consensus_7793#1 AATCACCACTTGGGG 546 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||