cluster # 7794

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Oryza sativa
cluster # 7794 cluster # 7794 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7794#0 length = 859 sequences # 4

consensus_7794#1 length = 392 sequences # 1

consensusID : consensus_7794#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 859
fasta sequence

                              [TTTTTTTTTTTTTTTTTTAGATAAAGAGTTTTGATATGATTTATATTGCATATAACATCCTAGGAAATACAGACAAGCGGACATGTAAAACAATACAAGATGAAAGTAACCAAGAAAATTGCTGGAAAAACTGCTGGTTCGATCAGCTACCGTCTTCAAACCCAAAAAGGAACAGGATGAACATATCCAGAAATATGTTCTAGGACCTCGCTTCACCAGAGCAAATTCATTTGATTTGGCCAACGGGCCAGAACCAACTTCATACAAAGGTGGAAGATGATCAAACATCAAACAGCACCACAGATCCCAAAGCATCAATAGTTTAGATCCATGTTTTCAGCCATCAACCAGATGGAAATGCCTCAGGAATGGATGGAAGACCTGACCGAAAACATTCTTCCATTCATATTTTCTAACAGGTCGTCAGACTGATCTTCGCAGTTCTGGT-GGAAGTTGCGCAACATGCATTGAAGAATTTGATTTAGC-TTGGTGTTGAAGCTCCATCATTTCTTCCTTGCTGTACTTTATTCTTTCATCTACAAAGCAGATTTCAGCAAGTCTACTTGGGCCAGCCGAACTTTTTGCCACTTTTGCTTTTACCTGTTGAGGTTGTCTAGAGGACTTGTGAAGATGCGAAGTACCACCATAATTTGCCTGAAGTTCCTGTATAAGCTCATGTCTCACTTTCAATCACAGGGTGACACGTACAGAATGCTGAAATTGCATCTCCTGTTAAGATCCAACAGCCGCTTAAATCCAACATACGCAGCGTGGCAGGGGGAACAAACTTTCTAAGCCCAGTGGTGGACAATATATTCCCACAGAACCCAAGATGTATCAAATTTGAGGCAGAAGACAG]

[-] EMBL AU096243             [TTTTTTTTTTTTTTTTTTAGATAAAGAGTTTTGATATGATTTATATTGCATATAACATCCTAGGAAATACAGACAAGCGGACATGTAAAACAATACAAGATGAAAGTAACCAAGAAAATTGCTGGAAAAACTGCTGGTTCGATCAGCTACCGTCTTCAAACCCAAAAAGGAACAGGATGAACATATCCAGAAATATGTTCTAGGACCTCGCTTCACCAGAGCAAATTCATTTGATTTGGCCAACGGGCCAGAACCAACTTCATACAAAGGTGGAAGATGATCAAACATCAAACAGCACCACAGATCCCAAAGCATCAATAGTTTAGATCCATGTTTTCAGCCATCAACCAGATGGAAATGCCTCAGGAATGGATGGAAGACCTGACCGAAAACATTCTTCCATTCATATTTTCTAACAGGTCGTCAGACTGATCTTCGCAGTTCTGGT GGAAGTTGCGCAACATGCATTGAAGAATTTGATTTAGC TTGGTGTTGAAGCTCCATCATTTCTTCCTTGCTGTACTTTATTCTTTCATCTACAAAGCAGATTTCAGCAAGTCTACTTGGGCCAGCCGAACTTTTTGCCACTTTTGCTTTTACCTGTTGAGGTTGTCTAGAGGACTTGTGAAGATGCGAAGTACCACCATAATTTGCCTGAAGTTCCTGTATAAGCTCATGTCTCACTTTCAATC                                                                                                                                                                       ]
[+] EMBL CF324154             [       ggTTTTTTTTTAGATAAAGAGTTTTGATATGATTTATATTGCATATAACATCCTAGGAAATACAGACAAGCGGACATGTAAAACAATACAAGATGAAAGTAACCAAGAAAATTGCTGGAAAAACTGCTGGTTCGATCAGCTACCGTCTTCAAACCCAAAAAGGAACAGGATGAACATATCCAGAAATATGTTCTAGGACCTCGCTTCACCAGAGCAAATTCATTTGATTTGGCCAACGGGCCAGAACCAACTTCATACAAAGGTGGAAGATGATCAAACATCAAACAGCACCACAGATCCCAAAGCATCAATAGTTTAGATCCATGTTTTCAGCCATCAACCAGATGGAAATGCCTCAGGAATGGATGGAAGACCTGACCGAAAACATTCTTCCATTCATATTTTCTAACAGGTCGTCAGACTGATTTTCGCAGTTCTGGTGGGAAGTTGCGCAACATGCATTGAAGAATTTGATTTAGCTTTGGTGTTGAAGCTCCATCATTTCTTCCTTGCTGTACTTTATTCTTTCATCTACAAAGCAGATTTCAGCAAGTCTACTTGGGCCAGCCGAACTTTT                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB643145             [                          AGTTTCGATATGATTTATATTGCATATAACATCCTAGGAAATACAGACAAGCGGACATGTAAAACAATACAAGATGAAAGTAACCAAGAAAATTGCTGGAAAAACTGCTGGTTCGATCAGCTACCGTCTTCAAACCCAAAAAGGAACAGGATGAACATATCCAGAAATATGTTCTAGGACCTCGCTTCACCAGAGCAAATTCATTTGATTTGGCCAACGGGCCAGAACCAACTTCATACAAAGGTGGAAGATGATCAAACATCAAACAGCACCACAGATCCCAAAGCATCAATAGTTTAGATCCATGTTTTCAGCCATCAACCAGATGGAAATGCCTCAGGAATGGATGGAAGACCTGACCGAAAACATTCTTCCATTCATATTTTCTAACAGGTCGTCAGACTGATCTTCGCAGTTCTGGT GGAAGTTGCGCAACATGCATTGAAGAATTTGATTTAGC TTGGTGTTGAAGCTCCATCATTTCTTCCTTGCTGTACTTTATTCTTTCATCTACAAAGCAGATTTCAGCAAGTCTACTTGGGCCAGCCGAACTTTTTGCCACTTTTGCTTTTACCTGTTGAGGTTGTCTAGAGGACTTGTGAAGATGCGAAGTACCACCATAATTTGCCTGAAGTTCCTGTATAAGCTCATGTCTCAC TTCAATCACAGGGTGACACGTACAGAATGCTGAAATTGCATCTCCTGTTAAGATCCAACAGCCGCTTAAATCCAACATACGCAGCGTGGCAGGGGGAACAAACTTTCTAAGCCCAGTGGTGGACAATATATTCCCACAGAACCCAAGATGTATCAAATTTGAGGCAGAAGACAG]
[+] EMBL CB638150             [                                         TATATTGCATATAACATCCTAGGAAATACAGACAAGCGGACATGTAAAACAATACAAGATGAAAGTAACCAAGAAAATTGCTGGAAAAACTGCTGGTTCGATCAGCTACCGTCTTCAAACCCAAAAAGGAACAGGATGAACATATCCAGAAATATGTTCTAGGACCTCGCTTCACCAGAGCAAATTCATTTGATTTGGCCAACGGGCCAGAACCAACTTCATACAAAGGTGGAAGATGATCAAACATCAAACAGCACCACAGATCCCAAAGCATCAATAGTTTAGATCCATGTTTTCAGCCATCAACCAGATGGAAATGCCTCAGGAATGGATGGAAGACCTGACCGAAAACATTCTTCCATTCATATTTTCTAACAGGTCGTCAGACTGATCTTCGCAGTTCTGGT GGAAGTTGCGCAACATGCATTGAAGAATTTGATTTAGC TTGGTGTTGAAGCTCCATCATTTCTTCCTTGCTGTACTTTATTCTTTCATCTACAAAGCAGATTTCAGCAAGTCTACTTGGGCCAGCCGAACTTTTTGCCACTTTTGCTTTTACCTGTTGAGGTTGTCTAGAGGACTTGTGAAGATGCGAAGTACCACCATAATTTGCCT                                                                                                                                                                                                           ]




>consensus_7794#0
TTTTTTTTTTTTTTTTTTAGATAAAGAGTTTTGATATGATTTATATTGCATATAACATCC
TAGGAAATACAGACAAGCGGACATGTAAAACAATACAAGATGAAAGTAACCAAGAAAATT
GCTGGAAAAACTGCTGGTTCGATCAGCTACCGTCTTCAAACCCAAAAAGGAACAGGATGA
ACATATCCAGAAATATGTTCTAGGACCTCGCTTCACCAGAGCAAATTCATTTGATTTGGC
CAACGGGCCAGAACCAACTTCATACAAAGGTGGAAGATGATCAAACATCAAACAGCACCA
CAGATCCCAAAGCATCAATAGTTTAGATCCATGTTTTCAGCCATCAACCAGATGGAAATG
CCTCAGGAATGGATGGAAGACCTGACCGAAAACATTCTTCCATTCATATTTTCTAACAGG
TCGTCAGACTGATCTTCGCAGTTCTGGTGGAAGTTGCGCAACATGCATTGAAGAATTTGA
TTTAGCTTGGTGTTGAAGCTCCATCATTTCTTCCTTGCTGTACTTTATTCTTTCATCTAC
AAAGCAGATTTCAGCAAGTCTACTTGGGCCAGCCGAACTTTTTGCCACTTTTGCTTTTAC
CTGTTGAGGTTGTCTAGAGGACTTGTGAAGATGCGAAGTACCACCATAATTTGCCTGAAG
TTCCTGTATAAGCTCATGTCTCACTTTCAATCACAGGGTGACACGTACAGAATGCTGAAA
TTGCATCTCCTGTTAAGATCCAACAGCCGCTTAAATCCAACATACGCAGCGTGGCAGGGG
GAACAAACTTTCTAAGCCCAGTGGTGGACAATATATTCCCACAGAACCCAAGATGTATCA
AATTTGAGGCAGAAGACAG

consensusID : consensus_7794#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 392
fasta sequence

                              [TTTTTTTTTTACCGTAGAAAACATCCAGAAATAATTTATTCGATAAAGGGTTTTGATATGATTTATATTGCATATAACATCCTAGGAAATACAGACAAGCTGACATGTAAAACAATACAAGATGAAAGTAACCAAGAAAATTGCTGGAAAAACTGCGTGGTTCGATCGGTACCGTCTTCAAACCCAAAAAGGAACAGGATGAACATATCCAGAAATATGTTCTAGGACCTCGCTTCACCAGAGCGAATTCATTTGATTTGGGGCAAGGGGCAGAACCAATTCATACAAAGGTGACACGATGATCCAAATCAAACAGACCACAGATCCCAAAGCATCAATAGTTTAGATCCATGTTTTCAGCCATCAACCAGATGGAACATGCCTCAGGAATG]

[-] EMBL BI810127             [TTTTTTTTTTACCGTAGAAAACATCCAGAAATAATTTATTCGATAAAGGGTTTTGATATGATTTATATTGCATATAACATCCTAGGAAATACAGACAAGCTGACATGTAAAACAATACAAGATGAAAGTAACCAAGAAAATTGCTGGAAAAACTGCGTGGTTCGATCGGTACCGTCTTCAAACCCAAAAAGGAACAGGATGAACATATCCAGAAATATGTTCTAGGACCTCGCTTCACCAGAGCGAATTCATTTGATTTGGGGCAAGGGGCAGAACCAATTCATACAAAGGTGACACGATGATCCAAATCAAACAGACCACAGATCCCAAAGCATCAATAGTTTAGATCCATGTTTTCAGCCATCAACCAGATGGAACATGCCTCAGGAATG]




>consensus_7794#1
TTTTTTTTTTACCGTAGAAAACATCCAGAAATAATTTATTCGATAAAGGGTTTTGATATG
ATTTATATTGCATATAACATCCTAGGAAATACAGACAAGCTGACATGTAAAACAATACAA
GATGAAAGTAACCAAGAAAATTGCTGGAAAAACTGCGTGGTTCGATCGGTACCGTCTTCA
AACCCAAAAAGGAACAGGATGAACATATCCAGAAATATGTTCTAGGACCTCGCTTCACCA
GAGCGAATTCATTTGATTTGGGGCAAGGGGCAGAACCAATTCATACAAAGGTGACACGAT
GATCCAAATCAAACAGACCACAGATCCCAAAGCATCAATAGTTTAGATCCATGTTTTCAG
CCATCAACCAGATGGAACATGCCTCAGGAATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7794#0      ----------------------TTTTTTTTTTTTTTTTTTAGATAAAGAGTTTTGATATG 38
consensus_7794#1      TTTTTTTTTTACCGTAGAAAACATCCAGAAATAATTTATTCGATAAAGGGTTTTGATATG 60
                                             *       *  *** ** ******* ***********

consensus_7794#0      ATTTATATTGCATATAACATCCTAGGAAATACAGACAAGCGGACATGTAAAACAATACAA 98
consensus_7794#1      ATTTATATTGCATATAACATCCTAGGAAATACAGACAAGCTGACATGTAAAACAATACAA 120
                      **************************************** *******************

consensus_7794#0      GATGAAAGTAACCAAGAAAATTGCTGGAAAAACTGC-TGGTTCGATCAGCTACCGTCTTC 157
consensus_7794#1      GATGAAAGTAACCAAGAAAATTGCTGGAAAAACTGCGTGGTTCGATCGG-TACCGTCTTC 179
                      ************************************ ********** * **********

consensus_7794#0      AAACCCAAAAAGGAACAGGATGAACATATCCAGAAATATGTTCTAGGACCTCGCTTCACC 217
consensus_7794#1      AAACCCAAAAAGGAACAGGATGAACATATCCAGAAATATGTTCTAGGACCTCGCTTCACC 239
                      ************************************************************

consensus_7794#0      AGAGCAAATTCATTTGATTTGGCCAACGGGCCAGAACCAACTTCATACAAAGGTGGAA-G 276
consensus_7794#1      AGAGCGAATTCATTTGATTTGGGGCAAGGGGCAGAACCAA-TTCATACAAAGGTGACACG 298
                      ***** ****************   * *** ********* **************  * *

consensus_7794#0      ATGATCAAACATCAAACAGCACCACAGATCCCAAAGCATCAATAGTTTAGATCCATGTTT 336
consensus_7794#1      ATGATCCAA-ATCAAACAG-ACCACAGATCCCAAAGCATCAATAGTTTAGATCCATGTTT 356
                      ****** ** ********* ****************************************

consensus_7794#0      TCAGCCATCAACCAGATGGAA-ATGCCTCAGGAATGGATGGAAGACCTGACCGAAAACAT 395
consensus_7794#1      TCAGCCATCAACCAGATGGAACATGCCTCAGGAATG------------------------ 392
                      ********************* **************                        

consensus_7794#0      TCTTCCATTCATATTTTCTAACAGGTCGTCAGACTGATCTTCGCAGTTCTGGTGGAAGTT 455
consensus_7794#1      ------------------------------------------------------------
                                                                                  

consensus_7794#0      GCGCAACATGCATTGAAGAATTTGATTTAGCTTGGTGTTGAAGCTCCATCATTTCTTCCT 515
consensus_7794#1      ------------------------------------------------------------
                                                                                  

consensus_7794#0      TGCTGTACTTTATTCTTTCATCTACAAAGCAGATTTCAGCAAGTCTACTTGGGCCAGCCG 575
consensus_7794#1      ------------------------------------------------------------
                                                                                  

consensus_7794#0      AACTTTTTGCCACTTTTGCTTTTACCTGTTGAGGTTGTCTAGAGGACTTGTGAAGATGCG 635
consensus_7794#1      ------------------------------------------------------------
                                                                                  

consensus_7794#0      AAGTACCACCATAATTTGCCTGAAGTTCCTGTATAAGCTCATGTCTCACTTTCAATCACA 695
consensus_7794#1      ------------------------------------------------------------
                                                                                  

consensus_7794#0      GGGTGACACGTACAGAATGCTGAAATTGCATCTCCTGTTAAGATCCAACAGCCGCTTAAA 755
consensus_7794#1      ------------------------------------------------------------
                                                                                  

consensus_7794#0      TCCAACATACGCAGCGTGGCAGGGGGAACAAACTTTCTAAGCCCAGTGGTGGACAATATA 815
consensus_7794#1      ------------------------------------------------------------
                                                                                  

consensus_7794#0      TTCCCACAGAACCCAAGATGTATCAAATTTGAGGCAGAAGACAG 859
consensus_7794#1      --------------------------------------------