cluster # 7812

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Oryza sativa
cluster # 7812 cluster # 7812 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7812#0 length = 733 sequences # 2
consensus_7812#1 length = 599 sequences # 1

consensus_7812#2 length = 555 sequences # 1
consensus_7812#3 length = 273 sequences # 1

consensusID : consensus_7812#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 733
fasta sequence

                              [CAGAGACGAGACAAGGGGATATATCTTCAGTTAGAATTTCATTTGCATATCTTCAGTTAGGGGACTATTATAGGACCTGAAAACAGGTAAGCAATTTGGCACTACACTTAATTAGTTAAGATTTTTCCAGCTGCTAATATATATCCTGTGTATAGATATGAATTACGAATTGCTAGCTATTCATTTGCATGTTTGCAGATGAACTGCACACTATTTGTCAATTCATGTGTGTGCATGGAAATTGTATCTTAGTTGAATAGAACTTCTCTTGTTTATTTTGCACTCAAGGCGTTCGACGGAATGCCCATGGTATAATTACTGACTGTCTTATAGGTATATAATTAACGGTCTCATCGTTTCTTGGCATTGTCAGAAACGACATGCTGGCCTCTCAAATTCTAGATTAGTTTCTGTTCTCTCAATAAAAATGTTTCAGCTATGTTTAGGCATGAGAAGTTTTATTTCTGACTTGTGCAGTTTTTTTCTCTCTCTGTTCAGCAGAAAAGGAAAGGCATGCAGACAATCCATTGTGGCACAGGCTCACAGCTGATCCTAGATGATCAAAATTGAAGAATATTTGCATGTGGCCAGTAACTCTCTTTTGTATGCTTATCTGAGGCTTAGGCCTGTCAGTATGTAACATTATGTAATTTGAAACTATGTAATCTCAGTACATAATTGATCTGTACTTGTCGNGNTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CA767084             [CAGAGACGAGACAAGGGGATATATCTTCAGTTAGAATTTCATTTGCATATCTTCAGTTAGGGGACTATTATAGGACCTGAAAACAGGTAAGCAATTTGGCACTACACTTAATTAGTTAAGATTTTTCCAGCTGCTAATATATATCCTGTGTATAGATATGAATTACGAATTGCTAGCTATTCATTTGCATGTTTGCAGATGAACTGCACACTATTTGTCAATTCATGTGTGTGCATGGAAATTGTATCTTAGTTGAATAGAACTTCTCTTGTTTATTTTGCACTCAAGGCGTTCGACGGAATGCCCATGGTATAATTACTGACTGTCTTATAGGTATATAATTAACGGTCTCATCGTTTCTTGGCATTGTCAGAAACGACATGCTGGCCTCTCAAATTCTAGATTAGTTTCTGTTCTCTCAATAAAAATGTTTCAGCTATGTTTAGGCATGAGAAGTTTTATTTCTGACTTGTGCAGTTTTTTTCTCTCTCTGTTCAGCAGAAAAGGAAAGGCATGCAGACAATCCATTGTGGCACAGGCTCACAGCTGATCCTAGATGATCAAAATTGAAGAATATTTGCATGTGGCCAGTAACTCTCTTTTGTATGCTTATCTGAGGCTTAGGCCTGTCAGTATGTAACATTATGTAATTTGAAACTATGTAATCTCAGTACATAATTGATCTGTACTTGTCGNGN                                   ]
[-] EMBL CA761028             [                                         TTTGCATATCTTCAGTTAGGGGACTATTATAGGCCCTGAAAACAGGTAAGCAATTTGGCCCTACACTTAATTAGTTAAGATTTTTCCAGCTGCTAATATATATCCTGTGTATAGATATGAATTACGAATTGCTAGCTATTCATTTGCATGTTTGCAGATGAACTGCACACTATTTGTCAATTCATGTGTGTGCATGGAAATTGTATTTTAGTTGAATAGAACTTCTCTTGTTTATTTTGCACTCAAGGCGTTTGACGGAATGCCCATGGTATAATTACTGACTGTTTTATAGGTATATAATTAACGGTCTCATCGTTTCTTGGCATTGTCAAAAACGACATGCTGGCCTCTCAAATTTTAGATTAGTTTCTGTTCTCTCAATAAAAATGTTTTAGCTATGTTTAGGCATGAAAAGTTTTATTTTTGACTTGTGCAGTTTTTTTCTCTTTCTGTTCAGCAGAAAAGGAAAGGCATGCAGACAATCCATTGTGGCACAGGCTCCCAGCTGATCCTAGATGATCAAAATTGAAGAATATTTGCATGTGGCCAGTAACTCTTTTTTGTATGCTTATTTGAGGCTTAGGCCTGTCAGTATGTAACATTATGTAATTTGAAACTATGTAATCTCAGTACATAATTGATCTGTACTTGTCGTGTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_7812#0
CAGAGACGAGACAAGGGGATATATCTTCAGTTAGAATTTCATTTGCATATCTTCAGTTAG
GGGACTATTATAGGACCTGAAAACAGGTAAGCAATTTGGCACTACACTTAATTAGTTAAG
ATTTTTCCAGCTGCTAATATATATCCTGTGTATAGATATGAATTACGAATTGCTAGCTAT
TCATTTGCATGTTTGCAGATGAACTGCACACTATTTGTCAATTCATGTGTGTGCATGGAA
ATTGTATCTTAGTTGAATAGAACTTCTCTTGTTTATTTTGCACTCAAGGCGTTCGACGGA
ATGCCCATGGTATAATTACTGACTGTCTTATAGGTATATAATTAACGGTCTCATCGTTTC
TTGGCATTGTCAGAAACGACATGCTGGCCTCTCAAATTCTAGATTAGTTTCTGTTCTCTC
AATAAAAATGTTTCAGCTATGTTTAGGCATGAGAAGTTTTATTTCTGACTTGTGCAGTTT
TTTTCTCTCTCTGTTCAGCAGAAAAGGAAAGGCATGCAGACAATCCATTGTGGCACAGGC
TCACAGCTGATCCTAGATGATCAAAATTGAAGAATATTTGCATGTGGCCAGTAACTCTCT
TTTGTATGCTTATCTGAGGCTTAGGCCTGTCAGTATGTAACATTATGTAATTTGAAACTA
TGTAATCTCAGTACATAATTGATCTGTACTTGTCGNGNTGTTTAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

consensusID : consensus_7812#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence

                              [CGACAACCGCCTAAGAACAGATGCTGCCGGGCGCCGGCTTCCATCTCCTCCTTTCGCGTTCGAGCGCGGACGCCGATGCCGTTGGCTGCCGTCTCCTCCGCTCCTCCGCATCCTATGGCACCCTCCCCCTCCCCATCCCTAGCGCCTCCACTCCTGCCACCTCGTCGCCAGATCCGGCCGCCCCCGTGGTCAAGGGCGCCAGATGCCGACGAGCTCCGCAGGGAGGACCGGGGGGAGGGTAAAGGGGGTTTGTGGTTGGGCCTCGGTTCGGTGGATGCTGCTCCTCACCAACCATATCCTCAGCGCTACCGGGACTGTNGCGATCCGAATTGTCCGCCCCCCTCGGCCTTTCCTAGGAGGGTTGCGGGGGGCCCCCCATGGAGGCCCCTGGACCCCACCCAGAGTTTTCCTCCCCCCCGGGGGCCATAAGAAACCTCCCCCCGCGGGGGGGGAGNTTTCTCTNTCCCCTCNNCCGTGTTTTGNNCCTCCCCCCTCCCNCGGCNGANGGNGGCNNNNCGGCGGGGGNGGCANCCTCTCGCCGGAGNNNCGGAGATGCGTGNGAAGNNAGCNCAGGGGCNTTGNCGGTGNNNAGAATGATA]

[+] EMBL CA753731             [CGACAACCGCCTAAGAACAGATGCTGCCGGGCGCCGGCTTCCATCTCCTCCTTTCGCGTTCGAGCGCGGACGCCGATGCCGTTGGCTGCCGTCTCCTCCGCTCCTCCGCATCCTATGGCACCCTCCCCCTCCCCATCCCTAGCGCCTCCACTCCTGCCACCTCGTCGCCAGATCCGGCCGCCCCCGTGGTCAAGGGCGCCAGATGCCGACGAGCTCCGCAGGGAGGACCGGGGGGAGGGTAAAGGGGGTTTGTGGTTGGGCCTCGGTTCGGTGGATGCTGCTCCTCACCAACCATATCCTCAGCGCTACCGGGACTGTNGCGATCCGAATTGTCCGCCCCCCTCGGCCTTTCCTAGGAGGGTTGCGGGGGGCCCCCCATGGAGGCCCCTGGACCCCACCCAGAGTTTTCCTCCCCCCCGGGGGCCATAAGAAACCTCCCCCCGCGGGGGGGGAGNTTTCTCTNTCCCCTCNNCCGTGTTTTGNNCCTCCCCCCTCCCNCGGCNGANGGNGGCNNNNCGGCGGGGGNGGCANCCTCTCGCCGGAGNNNCGGAGATGCGTGNGAAGNNAGCNCAGGGGCNTTGNCGGTGNNNAGAATGATA]




>consensus_7812#1
CGACAACCGCCTAAGAACAGATGCTGCCGGGCGCCGGCTTCCATCTCCTCCTTTCGCGTT
CGAGCGCGGACGCCGATGCCGTTGGCTGCCGTCTCCTCCGCTCCTCCGCATCCTATGGCA
CCCTCCCCCTCCCCATCCCTAGCGCCTCCACTCCTGCCACCTCGTCGCCAGATCCGGCCG
CCCCCGTGGTCAAGGGCGCCAGATGCCGACGAGCTCCGCAGGGAGGACCGGGGGGAGGGT
AAAGGGGGTTTGTGGTTGGGCCTCGGTTCGGTGGATGCTGCTCCTCACCAACCATATCCT
CAGCGCTACCGGGACTGTNGCGATCCGAATTGTCCGCCCCCCTCGGCCTTTCCTAGGAGG
GTTGCGGGGGGCCCCCCATGGAGGCCCCTGGACCCCACCCAGAGTTTTCCTCCCCCCCGG
GGGCCATAAGAAACCTCCCCCCGCGGGGGGGGAGNTTTCTCTNTCCCCTCNNCCGTGTTT
TGNNCCTCCCCCCTCCCNCGGCNGANGGNGGCNNNNCGGCGGGGGNGGCANCCTCTCGCC
GGAGNNNCGGAGATGCGTGNGAAGNNAGCNCAGGGGCNTTGNCGGTGNNNAGAATGATA

consensusID : consensus_7812#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence

                              [ACAAGGGGGAGGGTAAGGGGTTGTGTTGGCCTCGGTTCGGTGATGCTGCTCCTCACCAACCATATCCTTAGCGCTACCGGGACTGTGCGATCCGATTGTCCGCCCCCTCGCCTTCCTAGGATGGTTGCGGTGCCCCCATGAGGCCCTGACCCACCGAGTTTCTTCCTCTGGTCATAGACTCTCCACGGCCGAGTTCATTATTTACGTTTTCCCTTCCTCTTCCTGTTAAGGTCCCTAGCAGAAAAGGAAAGGTATGCAGACAATCCATTGTGGCACAGGCTCACAGCTGATCCTAGATGATCAAAATTGAAGAATATTTGCATGTGGCCAGTAACTCTCTTTTGTATGCTTATTTGAGGCTTAGGCCTGTCAGTATGTAACATTATGTAATTTGAAACTATGTAATCTCAGTACATAATTGATCTGTACTTGTCGTGTTGTTTAGTCTTGGAGTTGGTTGTGTTATTTTGTGTCTGGATGTGATTATGACTTTATGACTGATTGCTTATAAACTACCTGTCGTGAATGTTCCCAAGTAAAAAAAAAAAAAAAAAA]

[-] EMBL CA760655             [ACAAGGGGGAGGGTAAGGGGTTGTGTTGGCCTCGGTTCGGTGATGCTGCTCCTCACCAACCATATCCTTAGCGCTACCGGGACTGTGCGATCCGATTGTCCGCCCCCTCGCCTTCCTAGGATGGTTGCGGTGCCCCCATGAGGCCCTGACCCACCGAGTTTCTTCCTCTGGTCATAGACTCTCCACGGCCGAGTTCATTATTTACGTTTTCCCTTCCTCTTCCTGTTAAGGTCCCTAGCAGAAAAGGAAAGGTATGCAGACAATCCATTGTGGCACAGGCTCACAGCTGATCCTAGATGATCAAAATTGAAGAATATTTGCATGTGGCCAGTAACTCTCTTTTGTATGCTTATTTGAGGCTTAGGCCTGTCAGTATGTAACATTATGTAATTTGAAACTATGTAATCTCAGTACATAATTGATCTGTACTTGTCGTGTTGTTTAGTCTTGGAGTTGGTTGTGTTATTTTGTGTCTGGATGTGATTATGACTTTATGACTGATTGCTTATAAACTACCTGTCGTGAATGTTCCCAAGTAAAAAAAAAAAAAAAAAA]




>consensus_7812#2
ACAAGGGGGAGGGTAAGGGGTTGTGTTGGCCTCGGTTCGGTGATGCTGCTCCTCACCAAC
CATATCCTTAGCGCTACCGGGACTGTGCGATCCGATTGTCCGCCCCCTCGCCTTCCTAGG
ATGGTTGCGGTGCCCCCATGAGGCCCTGACCCACCGAGTTTCTTCCTCTGGTCATAGACT
CTCCACGGCCGAGTTCATTATTTACGTTTTCCCTTCCTCTTCCTGTTAAGGTCCCTAGCA
GAAAAGGAAAGGTATGCAGACAATCCATTGTGGCACAGGCTCACAGCTGATCCTAGATGA
TCAAAATTGAAGAATATTTGCATGTGGCCAGTAACTCTCTTTTGTATGCTTATTTGAGGC
TTAGGCCTGTCAGTATGTAACATTATGTAATTTGAAACTATGTAATCTCAGTACATAATT
GATCTGTACTTGTCGTGTTGTTTAGTCTTGGAGTTGGTTGTGTTATTTTGTGTCTGGATG
TGATTATGACTTTATGACTGATTGCTTATAAACTACCTGTCGTGAATGTTCCCAAGTAAA
AAAAAAAAAAAAAAA

consensusID : consensus_7812#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence

                              [TAGAACGCCGGCTTCCATCTCCTCCTTTCGCGTTCGAGCGCGGACGCGATGCCGTTGGCTGCCGTCTCCTCCGCTCCTCCGCATCCTATGGCACCCTCCCCCTCCCCATCCCTAGCGCCTCCACTCCTGCCANCTCGTCGNCAGATCCGGCCGACCCCGTGGTCAAGGGCGGCAAATNNCGACGAGCTCCGCAGGAGGACCGGGGGGAGGGTAAGGGGTTGTGNTGGCCTCGGNTCGGTGATGGTGGTCCTCAACAAACATATCCTCAGCGGT]

[+] EMBL OSS15441A            [TAGAACGCCGGCTTCCATCTCCTCCTTTCGCGTTCGAGCGCGGACGCGATGCCGTTGGCTGCCGTCTCCTCCGCTCCTCCGCATCCTATGGCACCCTCCCCCTCCCCATCCCTAGCGCCTCCACTCCTGCCANCTCGTCGNCAGATCCGGCCGACCCCGTGGTCAAGGGCGGCAAATNNCGACGAGCTCCGCAGGAGGACCGGGGGGAGGGTAAGGGGTTGTGNTGGCCTCGGNTCGGTGATGGTGGTCCTCAACAAACATATCCTCAGCGGT]




>consensus_7812#3
TAGAACGCCGGCTTCCATCTCCTCCTTTCGCGTTCGAGCGCGGACGCGATGCCGTTGGCT
GCCGTCTCCTCCGCTCCTCCGCATCCTATGGCACCCTCCCCCTCCCCATCCCTAGCGCCT
CCACTCCTGCCANCTCGTCGNCAGATCCGGCCGACCCCGTGGTCAAGGGCGGCAAATNNC
GACGAGCTCCGCAGGAGGACCGGGGGGAGGGTAAGGGGTTGTGNTGGCCTCGGNTCGGTG
ATGGTGGTCCTCAACAAACATATCCTCAGCGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7812#1      ------------------------------------------------------------
consensus_7812#3      ------------------------------------------------------------
consensus_7812#2      ------------------------------------------------------------
consensus_7812#0      CAGAGACGAGACAAGGGGATATATCTTCAGTTAGAATTTCATTTGCATATCTTCAGTTAG 60
                                                                                  

consensus_7812#1      ------------------------------------------------------------
consensus_7812#3      ------------------------------------------------------------
consensus_7812#2      ------------------------------------------------------------
consensus_7812#0      GGGACTATTATAGGACCTGAAAACAGGTAAGCAATTTGGCACTACACTTAATTAGTTAAG 120
                                                                                  

consensus_7812#1      ------------------------------------------------------------
consensus_7812#3      ------------------------------------------------------------
consensus_7812#2      ------------------------------------------------------------
consensus_7812#0      ATTTTTCCAGCTGCTAATATATATCCTGTGTATAGATATGAATTACGAATTGCTAGCTAT 180
                                                                                  

consensus_7812#1      --------------------------------------------------CGACAACCGC 10
consensus_7812#3      ------------------------------------------------------------
consensus_7812#2      ----------------------------------------------------ACAAGGGG 8
consensus_7812#0      TCATTTGCATGTTTGCAGATGAACTGCACACTATTTGTCAATTCATGTGTGTGCATGGAA 240
                                                                                  

consensus_7812#1      CTAAGAACAGATGCTGCCGGGCGCCGGCTT--CCAT-CTCCTCCTTTCGCGTTCGA---- 63
consensus_7812#3      ----------------TAGAACGCCGGCTT--CCAT-CTCCTCCTTTCGCGTTCGA---- 37
consensus_7812#2      GAGGGTAAGGGGTTGTGTTGGCCTCGGTTCGGTGATGCTGCTCCTCACCAACCATA---- 64
consensus_7812#0      ATTGTATCTTAGTTGAATAGAACTTCTCTTGTTTATTTTGCACTCAAGGCGTTCGACGGA 300
                                                  *     **  * * *            *    

consensus_7812#1      ---------GCGCGGACGCCGATGCCGTTG----------GCTGCCGTCTCCTCCGCTCC 104
consensus_7812#3      ---------GCGCGGACGC-GATGCCGTTG----------GCTGCCGTCTCCTCCGCTCC 77
consensus_7812#2      ---------TCCTTAGCGCTACCGGGACTGT---------GCGATCCGATTGTCCGCCCC 106
consensus_7812#0      ATGCCCATGGTATAATTACTGACTGTCTTATAGGTATATAATTAACGGTCTCATCGTTTC 360
                                        *         *                *        **   *

consensus_7812#1      TCCGCAT-CCTA----TGGCACCCTCCCCCTCCCCAT----CCCTAGCGCCTCCACTCCT 155
consensus_7812#3      TCCGCAT-CCTA----TGGCACCCTCCCCCTCCCCAT----CCCTAGCGCCTCCACTCCT 128
consensus_7812#2      CTCGCCTTCCTA----GGATGGTTGCGGTGCCCCCATGAGGCCCTGACCCACCGAGTTTC 162
consensus_7812#0      TTGGCATTGTCAGAAACGACATGCTGGCCTCTCAAATTCTAGATTAGTTTCTGTTCTCTC 420
                         ** *    *     *              *  **       *           *   

consensus_7812#1      GCCACCTCGTCGCCAGATC----CGGCCGCCCCCGTGGTCAAGGGCG------CCAGATG 205
consensus_7812#3      GCCANCTCGTCGNCAGATC----CGGCCGACCCCGTGGTCAAGGGCG------GCAAATN 178
consensus_7812#2      TTCCTCTGGTCATAGACTCTCCACGGCCGAGTTCATTATTTACGTTTTCCCTTCCTCTTC 222
consensus_7812#0      AATAAAAATGTTTCAGCTATGTTTAGGCATGAGAAGTTTTATTTCTGACTTGTGCAGTTT 480
                                       *       * *          *               *   * 

consensus_7812#1      CCGACGAGCTCCG--CAGGGAGGACCGGGGGGAGGGTAAAGGGGGT-TTGTGGTTGGGCC 262
consensus_7812#3      NCGACGAGCTCCG--CAGG-AGGACCGGGGGGAGGGTAAGGGG----TTGTGNT--GGCC 229
consensus_7812#2      CTGTTAAGGTCCC--TAGCAGAAAAGGAAAGGTATGCAGACAATCCATTGTGGCACAGGC 280
consensus_7812#0      TTTTCTCTCTCTGTTCAGCAGAAAAGGAAAGGCATGCAGACAATCCATTGTGGCACAGGC 540
                               **     **     *  *   **   * *         *****     * *

consensus_7812#1      TCG-GTTCGGTGGATGCTGCTCCTCACCAACCATATCCTCAGCGCTACCGGGACTGTNGC 321
consensus_7812#3      TCG-GNTCGGTG-ATGGTGGTCCTCAACAAACATATCCTCAGCGGT-------------- 273
consensus_7812#2      TCACAGCTGATCCTAGATGATCAAAATTGAAGAATATTTGCATGTGGCCAGTAACTCTCT 340
consensus_7812#0      TCACAGCTGATCCTAGATGATCAAAATTGAAGAATATTTGCATGTGGCCAGTAACTCTCT 600
                      **      * *    * ** **   *   *  *     *    *                

consensus_7812#1      GATCCGAATTGTCCGCCCCCCTCGGCCTTTCCTAGGAGGGTTGCGGGGGGCCCCCCATGG 381
consensus_7812#3      ------------------------------------------------------------
consensus_7812#2      TTTGTATGCTTATTTGAGGCTTAGGCCTGTCAGTATGTAACATTATGTAATTTGAAACTA 400
consensus_7812#0      TTTGTATGCTTATCTGAGGCTTAGGCCTGTCAGTATGTAACATTATGTAATTTGAAACTA 660
                                                                                  

consensus_7812#1      AGGCCCCTGGACCCCACCCAGAGTTTTCCTCCCCCCCGGGGGCCATAAGAAACCTCCCCC 441
consensus_7812#3      ------------------------------------------------------------
consensus_7812#2      TGTAATCTCAGTACATAATTGATCTGTACTTGTCGTGTTGTTTAGTCTTGGAGTTGGTTG 460
consensus_7812#0      TGTAATCTCAGTACATAATTGATCTGTACTTGTCGNGNTGTTTAAAAAAAAAAAAAAAAA 720
                                                                                  

consensus_7812#1      CGCGGGGGGGGAGNTTTCTCTNTCCCCTCNNCCGTGTTTTGNNCCTCCCCCCTCCCNCGG 501
consensus_7812#3      ------------------------------------------------------------
consensus_7812#2      TGTTATTTTGTGTCTGGATGTGATTATGACTTTATGACTGATTGCTTATAAACTACCTGT 520
consensus_7812#0      AAAAAAAAAAAAA----------------------------------------------- 733
                                                                                  

consensus_7812#1      CNGANGGNGGCNNNNCGGCGGGGGNGGCANCCTCTCGCCGGAGNNNCGGAGATGCGTGNG 561
consensus_7812#3      ------------------------------------------------------------
consensus_7812#2      CGTGAATGTTCCCAAGTAAAAAAAAAAAAAAAAAA------------------------- 555
consensus_7812#0      ------------------------------------------------------------
                                                                                  

consensus_7812#1      AAGNNAGCNCAGGGGCNTTGNCGGTGNNNAGAATGATA 599
consensus_7812#3      --------------------------------------
consensus_7812#2      --------------------------------------
consensus_7812#0      --------------------------------------