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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7815#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1249 fasta sequence
[GCTCTCTCTCTCTCTCTCTCTCTCTCTCAGCCATGGCTCGCCTCCTCTCGCGAACCCTAGCCTTGGCCCGCGCGGACTCCGCCGCGGTGCCCTCCTACGGCCGCCTCCATGTCCGTGGTGTCTCATCGAAGGTGGAGTTCATCGAGATCGACCTGTCGTCGGAGGACGCCCCCTCCTCGTCGTCCTCTTCCGGCGTCGAGGGGGGCGGCTTCGGGCCGCGGGAGATGGGGATGCGGCGACTGGAGGACGCCATCCACGGGGTACTCGTGCGGCGGGCGGCGCCGGAGTGGCTCCCCTTCGTGCCGGGAGGATCCTACTGGGTCCCGGAGATGCGGCGCGGGGTCGCCGCCGACCTCGTGGGCACCGCCGTCCGCAGCGCGATTGGCGCCGCCTGGAACGCGGAGGCGATGACGGAGGAGGAGATGATGTGCCTCACCACCATGCGCGGGTGGCCGTCGGAGGCTTACTTCGTCGAAGGGAAATTTTCTCATCCAGTGGAGAGTTCAAGAAAAGTTGCTACTCAAACTGATGAAGAGGAAAGCTAATTTGTTTGCATCACTTTAGCAGGGACCCCCTGAGAAATAGGAAGCTTGGAGCTGTCGAGTTCTGCTGATGTTGTACATACAGACAGCTATGAACGTGAGCACCAGCGTGTCATCTCATCAGTCGCTTCAGAAGATGATGTGCCCAGTGCTGTTACTACTATCAAAATGCCATGAACATGGATCCGTGTATTCCTGCAACACAGTGCCTTGCGCTATGGTCTTTTTTTCTGAGAGCTTGTACTTGTACCTGTAGAATGTAGTGTATGCATCAAGCTGCTGCTACTGAATAAAAGAAAAAAGAAAAATATATGTTGTGGGTTGGGCTGAATGCCTGTACCCCATGAGCACAGGATGCTCTCGATCATTGAGCGTGCTGTGCACGTCGTGGGCCTCCAACTAAAACTGTAATCATCCTTGGGCAGAAGACGGCAGAAATCTTGAACTTTTTGTTTTGTCTTGTTCTTCGGCTGATAATGCTGCTTCTTCTGATAACAATTGCCCCTGGAAATGCTAATAATGTAAGAAGAGCACTGCTATACGTACTAACTTTCTTTTTAACATAACTCTTTACAAACAATGATATGAGCTGTTTGATTTAACTAGATGGAAGTTATAGACAAGATGTATTCACATCATGACATGTAGTGTTAGTGAGGAAAAAAAAAGTATGTATGGACTTTTTCATGTAAGAAATGGCACATCTA]
[+] EMBL AK103790 [GCTCTCTCTCTCTCTCTCTCTCTCTCTCAGCCATGGCTCGCCTCCTCTCGCGAACCCTAGCCTTGGCCCGCGCGGACTCCGCCGCGGTGCCCTCCTACGGCCGCCTCCATGTCCGTGGTGTCTCATCGAAGGTGGAGTTCATCGAGATCGACCTGTCGTCGGAGGACGCCCCCTCCTCGTCGTCCTCTTCCGGCGTCGAGGGGGGCGGCTTCGGGCCGCGGGAGATGGGGATGCGGCGACTGGAGGACGCCATCCACGGGGTACTCGTGCGGCGGGCGGCGCCGGAGTGGCTCCCCTTCGTGCCGGGAGGATCCTACTGGGTCCCGGAGATGCGGCGCGGGGTCGCCGCCGACCTCGTGGGCACCGCCGTCCGCAGCGCGATTGGCGCCGCCTGGAACGCGGAGGCGATGACGGAGGAGGAGATGATGTGCCTCACCACCATGCGCGGGTGGCCGTCGGAGGCTTACTTCGTCGAAGGGAAATTTTCTCATCCAGTGGAGAGTTCAAGAAAAGTTGCTACTCAAACTGATGAAGAGGAAAGCTAATTTGTTTGCATCACTTTAGCAGGGACCCCCTGAGAAATAGGAAGCTTGGAGCTGTCGAGTTCTGCTGATGTTGTACATACAGACAGCTATGAACGTGAGCACCAGCGTGTCATCTCATCAGTCGCTTCAGAAGATGATGTGCCCAGTGCTGTTACTACTATCAAAATGCCATGAACATGGATCCGTGTATTCCTGCAACACAGTGCCTTGCGCTATGGTCTTTTTTTCTGAGAGCTTGTACTTGTACCTGTAGAATGTAGTGTATGCATCAAGCTGCTGCTACTGAATAAAAGAAAAAAGAAAAATATATGTTGTGGGTTGGGCTGAATGCCTGTACCCCATGAGCACAGGATGCTCTCGATCATTGAGCGTGCTGTGCACGTCGTGGGCCTCCAACTAAAACTGTAATCATCCTTGGGCAGAAGACGGCAGAAATCTTGAACTTTTTGTTTTGTCTTGTTCTTCGGCTGATAATGCTGCTTCTTCTGATAACAATTGCCCCTGGAAATGCTAATAATGTAAGAAGAGCAC ]
[+] EMBL CA766163 [ CCTCACCACCATGCGCGGGTGGCCGTCGGTGGCTTACTTCGTCGAAGGGAAATTTTCTCATCCAGTGGAGAGTTCAAGAAAAGTTGCTACTCAAACTGATGAAGAGGAAAGCTAATTTGTTTGCATCACTTTAGCAGGGACCCCCTGAGAAATAGGAAGCTTGGAGCTGTCGAGTTCTGCTGATGTTGTACATACAGACAGCTATGAACGTGAGCACCAGCGTGTCATCTCATCAGTCGCTTCAGAAGATGATGTGCCCAGTGCTGTTACTACTATCAAAATGCCATGAACATGGATCCGTGTATTCCTGCAACACAGTGCCTTGCGCTATGGTCTTTTTTTCTGAGAGCTTGTACTTGTACCTGTAGAATGTAGTGTATGCATCAAGCTGCTGCTACTGAATAAAAG AAAAAGAAAAATATATGTTGTGGGTTGGGCTGAATGCCTGTACCCCATGAGCACAGGATGCTCTCGATCATTGAGCGTGCTGTGCACGTCGTGGGCCTCCAACTAAAACTGTAATCATCCTTGGGCAGAAGACGGCAGAAATCTTGAACTTTTTGTTTTGTCTTGGTCTTCGGCTGATAATGCTGCTTC ]
[-] EMBL CB651913 [ TTCTCATCCAGTGGAGAGTTCAAGAAAAGTTGCTACTCAAACTGATGAAGAGGAAAGCTAATTTGTTTGCATCACTTTAGCAGGGACCCCCTGAGAAATAGGAAGCTTGGAGCTGTCGAGTTCTGCTGATGTTGTACATACAGACAGCTATGAACGTGAGCACCAGCGTGTCATCTCATCAGTCGCTTCAGAAGATGATGTGCCCAGTGCTGTTACTACTATCAAAATGCCATGAACATGGATCCGTGTATTCCTGCAACACAGTGCCTTGCGCTATGGTCTTTTTTTCTGAGAGCTTGTACTTGTACCTGTAGAATGTAGTGTATGCATCAAGCTGCTGCTACTGAATAAAAGAAAAAAGAAAAATATATGTTGTGGGTTGGGCTGAATGCCTGTACCCCATGAGCACAGGATGCTCTCGATCATTGAGCGTGCTGTGCACGTCGTGGGCCTCCAACTAAAACTGTAATCATCCTTGGGCAGAAGACGGCAGAAATCTTGAACTTTTTGTTTTGTCTTGTTCTTCGGCTGATAATGCTGCTTCTTTTGATAACAATTGCCCCTGGAAATGCTAATAATGTAAGAAGAGCACTGCTATACGTACTAACTTTCTTTTTAACATAACTCTTTACAAACAATGATATGAGCTGTTTGATTTAACTAGATGGAAGTTATAGACAAGATGTATTCACATCATGACATGTAGTGTTAGTGAGGAAAAAAAAAGTATGTATGGACTTTTTCATGTAAGAAATGGCACATCTA]
[+] EMBL CF327357 [ ATGGTCTTTTTTTCTGAGAGCTTGTACTTGTACCTGTAGAATGTAGTGTATGCATCAAGCTGCTGCTACTGAATAAAAGAAAAAAGAAAAATATATGTTGTGGGTTGGGCTGAATGCCTGTACCCCATGAGCACAGGATGCTCTCGATCATTGATCGTGCTGTGCACGTCGTGGGCCTCCAACTAAAACTGTAATCATCCTTGGGCAGAAGACGGCAGAAATCTTGAACTTTTTGTTTTGTCTTGTTCTTCGGCTGATAATGCTGCTTCTTCTGATAACAATTGCCCCTGGAAATGCTAATAATGTAAGAAGAGCACTGCTATACGTACTAACTTTCTTTTTAAAAAAA ]
consensusID : consensus_7815#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence
[GAAAAGTTGCTACTCAAACTGATGAAGAGGAAAGCTAATTTGTTTGCATCACTTTAGCAGGGACCNCCNTGAGAAATAGGAAGCTTGGAGCTGTCGAGTTCTGCTGATGTTGTACATACAGACAGCTATGAACGTGAGCACCAGCGTGTCATCTCATCAGTCGCTTCAGAAGATGATGTGCCCAGTGCTGTTACTACTATCAAAATGCCATGAACATGGATCCGTGTATTCCTGCAACACAGTGCCTTGCGCTATGGTCTTTTTTTCTGAGAGCTTGTACTTGTACCTGTAGAATGTAGTGTATGCATCAAGCTGCTGCTACTGAATAAAAGAAAAAAGAAAAATATATGTTGTGGGTTGGGCTGAATGCCTGTACCCCATGAGCACAGGATGCTCTCGATCATTGAGCGTGCTGTGCACGTCGTGGGCCTCCAACTAAAACTGTAATCATCCTTGGGCAGAAGACGGCAGAAATCTTGAACTTTTTGTTTAAAAAAAAAAAAA]
[-] EMBL CF323643 [GAAAAGTTGCTACTCAAACTGATGAAGAGGAAAGCTAATTTGTTTGCATCACTTTAGCAGGGACCNCCNTGAGAAATAGGAAGCTTGGAGCTGTCGAGTTCTGCTGATGTTGTACATACAGACAGCTATGAACGTGAGCACCAGCGTGTCATCTCATCAGTCGCTTCAGAAGATGATGTGCCCAGTGCTGTTACTACTATCAAAATGCCATGAACATGGATCCGTGTATTCCTGCAACACAGTGCCTTGCGCTATGGTCTTTTTTTCTGAGAGCTTGTACTTGTACCTGTAGAATGTAGTGTATGCATCAAGCTGCTGCTACTGAATAAAAGAAAAAAGAAAAATATATGTTGTGGGTTGGGCTGAATGCCTGTACCCCATGAGCACAGGATGCTCTCGATCATTGAGCGTGCTGTGCACGTCGTGGGCCTCCAACTAAAACTGTAATCATCCTTGGGCAGAAGACGGCAGAAATCTTGAACTTTTTGTTTAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7815#0 GCTCTCTCTCTCTCTCTCTCTCTCTCTCAGCCATGGCTCGCCTCCTCTCGCGAACCCTAG 60
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 CCTTGGCCCGCGCGGACTCCGCCGCGGTGCCCTCCTACGGCCGCCTCCATGTCCGTGGTG 120
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 TCTCATCGAAGGTGGAGTTCATCGAGATCGACCTGTCGTCGGAGGACGCCCCCTCCTCGT 180
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 CGTCCTCTTCCGGCGTCGAGGGGGGCGGCTTCGGGCCGCGGGAGATGGGGATGCGGCGAC 240
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 TGGAGGACGCCATCCACGGGGTACTCGTGCGGCGGGCGGCGCCGGAGTGGCTCCCCTTCG 300
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 TGCCGGGAGGATCCTACTGGGTCCCGGAGATGCGGCGCGGGGTCGCCGCCGACCTCGTGG 360
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 GCACCGCCGTCCGCAGCGCGATTGGCGCCGCCTGGAACGCGGAGGCGATGACGGAGGAGG 420
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 AGATGATGTGCCTCACCACCATGCGCGGGTGGCCGTCGGAGGCTTACTTCGTCGAAGGGA 480
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 AATTTTCTCATCCAGTGGAGAGTTCAAGAAAAGTTGCTACTCAAACTGATGAAGAGGAAA 540
consensus_7815#1 ---------------------------GAAAAGTTGCTACTCAAACTGATGAAGAGGAAA 33
*********************************
consensus_7815#0 GCTAATTTGTTTGCATCACTTTAGCAGGGACCCCCT-GAGAAATAGGAAGCTTGGAGCTG 599
consensus_7815#1 GCTAATTTGTTTGCATCACTTTAGCAGGGACCNCCNTGAGAAATAGGAAGCTTGGAGCTG 93
******************************** ** ***********************
consensus_7815#0 TCGAGTTCTGCTGATGTTGTACATACAGACAGCTATGAACGTGAGCACCAGCGTGTCATC 659
consensus_7815#1 TCGAGTTCTGCTGATGTTGTACATACAGACAGCTATGAACGTGAGCACCAGCGTGTCATC 153
************************************************************
consensus_7815#0 TCATCAGTCGCTTCAGAAGATGATGTGCCCAGTGCTGTTACTACTATCAAAATGCCATGA 719
consensus_7815#1 TCATCAGTCGCTTCAGAAGATGATGTGCCCAGTGCTGTTACTACTATCAAAATGCCATGA 213
************************************************************
consensus_7815#0 ACATGGATCCGTGTATTCCTGCAACACAGTGCCTTGCGCTATGGTCTTTTTTTCTGAGAG 779
consensus_7815#1 ACATGGATCCGTGTATTCCTGCAACACAGTGCCTTGCGCTATGGTCTTTTTTTCTGAGAG 273
************************************************************
consensus_7815#0 CTTGTACTTGTACCTGTAGAATGTAGTGTATGCATCAAGCTGCTGCTACTGAATAAAAGA 839
consensus_7815#1 CTTGTACTTGTACCTGTAGAATGTAGTGTATGCATCAAGCTGCTGCTACTGAATAAAAGA 333
************************************************************
consensus_7815#0 AAAAAGAAAAATATATGTTGTGGGTTGGGCTGAATGCCTGTACCCCATGAGCACAGGATG 899
consensus_7815#1 AAAAAGAAAAATATATGTTGTGGGTTGGGCTGAATGCCTGTACCCCATGAGCACAGGATG 393
************************************************************
consensus_7815#0 CTCTCGATCATTGAGCGTGCTGTGCACGTCGTGGGCCTCCAACTAAAACTGTAATCATCC 959
consensus_7815#1 CTCTCGATCATTGAGCGTGCTGTGCACGTCGTGGGCCTCCAACTAAAACTGTAATCATCC 453
************************************************************
consensus_7815#0 TTGGGCAGAAGACGGCAGAAATCTTGAACTTTTTGTTTTGTCTTGTTCTTCGGCTGATAA 1019
consensus_7815#1 TTGGGCAGAAGACGGCAGAAATCTTGAACTTTTTGTTTAAAAAAAAAAAAA--------- 504
**************************************
consensus_7815#0 TGCTGCTTCTTCTGATAACAATTGCCCCTGGAAATGCTAATAATGTAAGAAGAGCACTGC 1079
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 TATACGTACTAACTTTCTTTTTAACATAACTCTTTACAAACAATGATATGAGCTGTTTGA 1139
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 TTTAACTAGATGGAAGTTATAGACAAGATGTATTCACATCATGACATGTAGTGTTAGTGA 1199
consensus_7815#1 ------------------------------------------------------------
consensus_7815#0 GGAAAAAAAAAGTATGTATGGACTTTTTCATGTAAGAAATGGCACATCTA 1249
consensus_7815#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||