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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7821#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1528 fasta sequence
[CTTGTGTTGGCCACTTCGCCTTGCGCCATTTCGATTCCACCAAGCCCTAGTCCCCGCCACGCCACCGTCCGCCGGCAACGCCCCCGCCGCCGGCCGGCGGCCGGCGCCATCCCCATCCATGGCGTCCAGGACAGCAGGGCGGGAGCGGGACCCGTGTGAGGATGAGGAGGTACGAGTGTACAGCGATTCTCGTGGGTATTTCGCCTCCGGGGGGCGCGATGTTGATGTCGGGCCGTTCCCAACCTCCGATGAACTCTACGCCGCACTCGACCACCACTATCACCTCCGGTCGAAGCCCTGTGATCCAGCCCCGCTGCCGACACAGTGTGAGGGCCTTTTGAGAGGTGCATCTGAGCCTGAATCTGCACAGGCACTGCAGGAACCAGATGTTTTGTCCGTGGGGGAGCTTCTTGGCGCTATAGCATTGAAAGAACCAATTATTTCCAGTCCCTCTTCCTCCCCACAGGCAGTACCAGAAGACAACATTGACGCTGTACCATCAGGGTGCTGCCTTTCCTCATCCCCTGGGTCAGTCATTTGGGTTCACAAACCTCCTGAAGGCCGCCGCGGGTCATACCACATTCGAATGGATCGTAGTGGGCTGTTCCACACGTATCCTGATATGGGTGGTCCATTTCTCAGCTTAAATGAAGCTCAAGACGCTTTCACTAGCCATCTTAACATCCTATATCCTCCATTAAAGTTTGAGGAGCGGGATGGGGAGTCTATTGTGGACATGATGGTACGCAAAATCCTTTATTTTCCTGATGGAACTAGGAGGAGGTACTCCAAATCACAAGTAACGCAGGATGTGCATAATGATATGCGCCAATTGGCTCGGGTGATATTAGACATGTATAATGACGATCACAGTCTTTTAGGGGGTCTTGCATACGAGCTCAAAGATGTCATTCACTTTCAACCAATTATGGAGAGCTGTACGTGGTTTGACCATTTAAATTTCACGGCATTGACCAAAGGAGATAATGAATTGGATTATCAAATTCATCTGTTCTTTGCTGAATTGATGTGTTTGGTAGGACAAAAGGATTATATTGTCACTTGTTGCTGTGCACTTAAATCTGATGACAATGGTAATTGCTATAACTGCAAGCTTCAGAATGTTAATTTGAAGCACCCAAATGATACTAGCCAATATGCTGGTGGACATGAGTATCTTTGTGGAATTTATGACACCGAAGAGATGAGCGAGTCTGAAGATGAAGAAAAAGAGGAGCAGAGGATAAGAAAACTTTACGAGGATCTTGAGGAACCAGGTTTGCATGAAAAACTTTTTGGTGATGTAGAGGAAACAGGTTTACAGGAAGAACTTTTTGGTTGAGGTGGAATGGGAGCGGGAGTACGTACTCCTAATGAGTATAGAACCATTTTTATGCTACCGTGTCTGTGTTGTAGTAGTGCGTTTTCATGTTATTTAGGAATTTGTGGAGTTTTGGTTATTATGTAGTACAACCTGCCATTTTACTATAATACTATATGGTACGTGACTAAAAAAAAAAAAAAAAAA]
[+] EMBL AK068098 [CTTGTGTTGGCCACTTCGCCTTGCGCCATTTCGATTCCACCAAGCCCTAGTCCCCGCCACGCCACCGTCCGCCGGCAACGCCCCCGCCGCCGGCCGGCGGCCGGCGCCATCCCCATCCATGGCGTCCAGGACAGCAGGGCGGGAGCGGGACCCGTGTGAGGATGAGGAGGTACGAGTGTACAGCGATTCTCGTGGGTATTTCGCCTCCGGGGGGCGCGATGTTGATGTCGGGCCGTTCCCAACCTCCGATGAACTCTACGCCGCACTCGACCACCACTATCACCTCCGGTCGAAGCCCTGTGATCCAGCCCCGCTGCCGACACAGTGTGAGGGCCTTTTGAGAGGTGCATCTGAGCCTGAATCTGCACAGGCACTGCAGGAACCAGATGTTTTGTCCGTGGGGGAGCTTCTTGGCGCTATAGCATTGAAAGAACCAATTATTTCCAGTCCCTCTTCCTCCCCACAGGCAGTACCAGAAGACAACATTGACGCTGTACCATCAGGGTGCTGCCTTTCCTCATCCCCTGGGTCAGTCATTTGGGTTCACAAACCTCCTGAAGGCCGCCGCGGGTCATACCACATTCGAATGGATCGTAGTGGGCTGTTCCACACGTATCCTGATATGGGTGGTCCATTTCTCAGCTTAAATGAAGCTCAAGACGCTTTCACTAGCCATCTTAACATCCTATATCCTCCATTAAAGTTTGAGGAGCGGGATGGGGAGTCTATTGTGGACATGATGGTACGCAAAATCCTTTATTTTCCTGATGGAACTAGGAGGAGGTACTCCAAATCACAAGTAACGCAGGATGTGCATAATGATATGCGCCAATTGGCTCGGGTGATATTAGACATGTATAATGACGATCACAGTCTTTTAGGGGGTCTTGCATACGAGCTCAAAGATGTCATTCACTTTCAACCAATTATGGAGAGCTGTACGTGGTTTGACCATTTAAATTTCACGGCATTGACCAAAGGAGATAATGAATTGGATTATCAAATTCATCTGTTCTTTGCTGAATTGATGTGTTTGGTAGGACAAAAGGATTATATTGTCACTTGTTGCTGTGCACTTAAATCTGATGACAATGGTAATTGCTATAACTGCAAGCTTCAGAATGTTAATTTGAAGCACCCAAATGATACTAGCCAATATGCTGGTGGACATGAGTATCTTTGTGGAATTTATGACACCGAAGAGATGAGCGAGTCTGAAGATGAAGAAAAAGAGGAGCAGAGGATAAGAAAACTTTACGAGGATCTTGAGGAACCAGGTTTGCATGAAAAACTTTTTGGTGATGTAGAGGAAACAGGTTTACAGGAAGAACTTTTTGGTTGAGGTGGAATGGGAGCGGGAGTACGTACTCCTAATGAGTATAGAACCATTTTTATGCTACCGTGTCTGTGTTGTAGTAGTGCGTTTTCATGTTATTTAGGAATTTGTGGAGTTTTGGTTATTATGTAGTACAACCTGCCATTTTACTATAATACTATATGGTACGTGACT ]
[+] EMBL CF323498 [ TACCACATTCGAATGGATCGTAGTGGGCTGTTCCACACGTATCCTGATATGGGTGGTCCATTTCTCAGCTTAAATGAAGCTCAAGACGCTTTCACTAGCCATCTTAACATCCTATATCCTCCATTAAAGTTTGAGGAGCGGGATGGGGAGTCTATTGTGGACATGATGGTACGCAAAATCCTTTATTTTCCTGATGGAACTAGGAGGAGGTACTCCAAATCACAAGTAACGCAGGATGTGCATAATGATATGCGCCAATTGGCTCGGGTGATATTAGACATGTATAATGACGATCACAGTCTTTTAGGGGGTCTTGCATACGAGCTCAAAGATGTCATTCACTTTCAACCAATTATGGAGAGCTGTACGTGGTTTGACCATTTAAATTTCACGGCATTGACCAAAGGAGATAATGAATTGGATTATCAAATTCATCTGTTCTTTGCTGAATTGA ]
[-] EMBL CA759085 [ GGTGATATTAGACATGTATAATGACGATCACAGTCTCTTAGGGGGTCTTGCATACGAGCTCAAAGATGTCATTCACTTTCAACCAATTATGGAGAACTGTACGTGGTTTGACCATTTAAATTTCCCGGCATTGACCAAAGGAGATAATGAATTGGATTATCAAATTTATCTGTTCTTTGCTGAAATGATGTGTTTGGTAGGACAAAAGGATTATATTGTCCCTTGTTGCTGTGCCCTTAAATTTGATGGCAATGGTAAATGCTATAACTGCCAGCTTTAAAATGTTAATTTGAAGCCCCCCAATGATACTAACCCATTTGTTGGTGGGCCTGAGTATCTTTGTGGAATTTATGACCCCGAAAAGATTAGCGAGTTTGAAGATGAAGAAAAAGAGGAGCAGAGGATAAAAAAACTTTCCGAGGATTTTGAGGAACCAGGTTTGCATGAAAAACTTTTTGGTGAAGTAGAGGAAACAGGTTTTCAGGAAAAACTTTTTGGTTTAGGTGGAATGGGAGCGGGAGTTCGTTCTCCTAATGAGTATAGAACCCTTTTTTTGCCACCGGGTTTGTGTTGTAGTAATGCGTTTTCATGTTATTTAGGAATTTGTGGAGTTTTGGGTATTATGTAGTACAACCAGCCCTTTTTCTATAATACTATATGGTTCGTGAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA761499 [ AACTTTACGAGGATCTTGAGGAACCAGGTTTGCATGAAAAACTTTTTGGTGATGTAGAGGAAACAGGTTTACAGGAAGAACTTTTTGGTTGAGGTGGAATGGGAGCGGGAGTACGTACTCCTAATGAGTATAGAACCATTTTTATGCTACCGTGTCTGTGTTGTAGTAGTGCGTTTTCATGTTATTTAGGAATTTGTGGAGTTTTGGTTATTATGTTGTca ]
consensusID : consensus_7821#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence
[ATGCTCCTGCTAGTTAGGTTAATTTAGCAAATACACTGTAGCAATCAAGCGGCTCCATCGAGCGACATAATTAAGAAACCAAATAGAAATCGATCGATAGGCATATTTCTCATGGAACAGCAAGACACCAGATCGTCCTCATCATATGCAAGAGGACTCGATCCAGTCATGCAAATTTTAGTATGGGCCGAGCCCAATTCCGGCCCAATAGTCACTTGTGTTGGCCACTTCGCCTTGCGCCATTTCGATTCCACCAAGCCCTAGTCCCCGCCACGCCACCGTCCGCCGGCAACGCCCCCGCCGCCGGCCGGCGGCCGGCGCCATCCCCATCCATGGCGTCCAGGACAGCAGGGCGGGAGCGGGACCCGTGTGAGGATGAGGAGGTACGAGTGTACAGCGATTCTCGTGGGTATTTCGCCTCCGGGGGGCGCGATGTTGATGTCGGGCCGTTCCCAACCTCCGATGAACTCTACGCCGCACTCGACCACCACTATCACCTCCGGTCGAAGCCCTGTGATCCAGCCCCGCTGCCGACACAGTACGAACACCACCTCAACCCTCCTCCCTCCTCCCTATCTTTCTCTGTCGATGAACAAGGTTGATGAAAGGGCTTGCATTTGGATTCAATCCTATTATTTATCATTTATGTTTCTGAGGATTGATGGTTCCCCAGACACTTTCTATAATGAGGTGATG]
[-] EMBL AK108212 [ATGCTCCTGCTAGTTAGGTTAATTTAGCAAATACACTGTAGCAATCAAGCGGCTCCATCGAGCGACATAATTAAGAAACCAAATAGAAATCGATCGATAGGCATATTTCTCATGGAACAGCAAGACACCAGATCGTCCTCATCATATGCAAGAGGACTCGATCCAGTCATGCAAATTTTAGTATGGGCCGAGCCCAATTCCGGCCCAATAGTCACTTGTGTTGGCCACTTCGCCTTGCGCCATTTCGATTCCACCAAGCCCTAGTCCCCGCCACGCCACCGTCCGCCGGCAACGCCCCCGCCGCCGGCCGGCGGCCGGCGCCATCCCCATCCATGGCGTCCAGGACAGCAGGGCGGGAGCGGGACCCGTGTGAGGATGAGGAGGTACGAGTGTACAGCGATTCTCGTGGGTATTTCGCCTCCGGGGGGCGCGATGTTGATGTCGGGCCGTTCCCAACCTCCGATGAACTCTACGCCGCACTCGACCACCACTATCACCTCCGGTCGAAGCCCTGTGATCCAGCCCCGCTGCCGACACAGTACGAACACCACCTCAACCCTCCTCCCTCCTCCCTATCTTTCTCTGTCGATGAACAAGGTTGATGAAAGGGCTTGCATTTGGATTCAATCCTATTATTTATCATTTATGTTTCTGAGGATTGATGGTTCCCCAGACACTTTCTATAATGAGGTGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7821#0 ------------------------------------------------------------
consensus_7821#1 ATGCTCCTGCTAGTTAGGTTAATTTAGCAAATACACTGTAGCAATCAAGCGGCTCCATCG 60
consensus_7821#0 ------------------------------------------------------------
consensus_7821#1 AGCGACATAATTAAGAAACCAAATAGAAATCGATCGATAGGCATATTTCTCATGGAACAG 120
consensus_7821#0 ------------------------------------------------------------
consensus_7821#1 CAAGACACCAGATCGTCCTCATCATATGCAAGAGGACTCGATCCAGTCATGCAAATTTTA 180
consensus_7821#0 ----------------------------------CTTGTGTTGGCCACTTCGCCTTGCGC 26
consensus_7821#1 GTATGGGCCGAGCCCAATTCCGGCCCAATAGTCACTTGTGTTGGCCACTTCGCCTTGCGC 240
**************************
consensus_7821#0 CATTTCGATTCCACCAAGCCCTAGTCCCCGCCACGCCACCGTCCGCCGGCAACGCCCCCG 86
consensus_7821#1 CATTTCGATTCCACCAAGCCCTAGTCCCCGCCACGCCACCGTCCGCCGGCAACGCCCCCG 300
************************************************************
consensus_7821#0 CCGCCGGCCGGCGGCCGGCGCCATCCCCATCCATGGCGTCCAGGACAGCAGGGCGGGAGC 146
consensus_7821#1 CCGCCGGCCGGCGGCCGGCGCCATCCCCATCCATGGCGTCCAGGACAGCAGGGCGGGAGC 360
************************************************************
consensus_7821#0 GGGACCCGTGTGAGGATGAGGAGGTACGAGTGTACAGCGATTCTCGTGGGTATTTCGCCT 206
consensus_7821#1 GGGACCCGTGTGAGGATGAGGAGGTACGAGTGTACAGCGATTCTCGTGGGTATTTCGCCT 420
************************************************************
consensus_7821#0 CCGGGGGGCGCGATGTTGATGTCGGGCCGTTCCCAACCTCCGATGAACTCTACGCCGCAC 266
consensus_7821#1 CCGGGGGGCGCGATGTTGATGTCGGGCCGTTCCCAACCTCCGATGAACTCTACGCCGCAC 480
************************************************************
consensus_7821#0 TCGACCACCACTATCACCTCCGGTCGAAGCCCTGTGATCCAGCCCCGCTGCCGACACAGT 326
consensus_7821#1 TCGACCACCACTATCACCTCCGGTCGAAGCCCTGTGATCCAGCCCCGCTGCCGACACAGT 540
************************************************************
consensus_7821#0 GTGAGGGCCTTTTGAGAGGTGCATCTGAGCCTGAATCTGCACAGGCACTGCAGGAACCAG 386
consensus_7821#1 ACGAACACCACCTCAACCCTCCTCCCTCCTCCCTATCTTTCTCTG---TCGATGAACAAG 597
** ** * * * * * * **** * * * **** **
consensus_7821#0 ATGTTTTGTCCGTGGGGGAGCTTCTTGGCGCTATAGCATTGAAAGAACCAATTATTTCCA 446
consensus_7821#1 -------GTTGATGAAAGGGCTT------GCATTTGGATTCAA---TCCTATTATTTATC 641
** ** * **** ** * * *** ** ** *******
consensus_7821#0 GTCCCTCTTCCTCCCCACAGGCAGTACCAGAAGACAACATTGACGCTGTACCATCAGGGT 506
consensus_7821#1 ATTTATGTTTCTGAGGATTGATGGTTCCCCA-GACACTTTCTATAATGAGGTGATG---- 696
* * ** ** * * ** ** * **** * * **
consensus_7821#0 GCTGCCTTTCCTCATCCCCTGGGTCAGTCATTTGGGTTCACAAACCTCCTGAAGGCCGCC 566
consensus_7821#1 ------------------------------------------------------------
consensus_7821#0 GCGGGTCATACCACATTCGAATGGATCGTAGTGGGCTGTTCCACACGTATCCTGATATGG 626
consensus_7821#1 ------------------------------------------------------------
consensus_7821#0 GTGGTCCATTTCTCAGCTTAAATGAAGCTCAAGACGCTTTCACTAGCCATCTTAACATCC 686
consensus_7821#1 ------------------------------------------------------------
consensus_7821#0 TATATCCTCCATTAAAGTTTGAGGAGCGGGATGGGGAGTCTATTGTGGACATGATGGTAC 746
consensus_7821#1 ------------------------------------------------------------
consensus_7821#0 GCAAAATCCTTTATTTTCCTGATGGAACTAGGAGGAGGTACTCCAAATCACAAGTAACGC 806
consensus_7821#1 ------------------------------------------------------------
consensus_7821#0 AGGATGTGCATAATGATATGCGCCAATTGGCTCGGGTGATATTAGACATGTATAATGACG 866
consensus_7821#1 ------------------------------------------------------------
consensus_7821#0 ATCACAGTCTTTTAGGGGGTCTTGCATACGAGCTCAAAGATGTCATTCACTTTCAACCAA 926
consensus_7821#1 ------------------------------------------------------------
consensus_7821#0 TTATGGAGAGCTGTACGTGGTTTGACCATTTAAATTTCACGGCATTGACCAAAGGAGATA 986
consensus_7821#1 ------------------------------------------------------------
consensus_7821#0 ATGAATTGGATTATCAAATTCATCTGTTCTTTGCTGAATTGATGTGTTTGGTAGGACAAA 1046
consensus_7821#1 ------------------------------------------------------------
consensus_7821#0 AGGATTATATTGTCACTTGTTGCTGTGCACTTAAATCTGATGACAATGGTAATTGCTATA 1106
consensus_7821#1 ------------------------------------------------------------
consensus_7821#0 ACTGCAAGCTTCAGAATGTTAATTTGAAGCACCCAAATGATACTAGCCAATATGCTGGTG 1166
consensus_7821#1 ------------------------------------------------------------
consensus_7821#0 GACATGAGTATCTTTGTGGAATTTATGACACCGAAGAGATGAGCGAGTCTGAAGATGAAG 1226
consensus_7821#1 ------------------------------------------------------------
consensus_7821#0 AAAAAGAGGAGCAGAGGATAAGAAAACTTTACGAGGATCTTGAGGAACCAGGTTTGCATG 1286
consensus_7821#1 ------------------------------------------------------------
consensus_7821#0 AAAAACTTTTTGGTGATGTAGAGGAAACAGGTTTACAGGAAGAACTTTTTGGTTGAGGTG 1346
consensus_7821#1 ------------------------------------------------------------
consensus_7821#0 GAATGGGAGCGGGAGTACGTACTCCTAATGAGTATAGAACCATTTTTATGCTACCGTGTC 1406
consensus_7821#1 ------------------------------------------------------------
consensus_7821#0 TGTGTTGTAGTAGTGCGTTTTCATGTTATTTAGGAATTTGTGGAGTTTTGGTTATTATGT 1466
consensus_7821#1 ------------------------------------------------------------
consensus_7821#0 AGTACAACCTGCCATTTTACTATAATACTATATGGTACGTGACTAAAAAAAAAAAAAAAA 1526
consensus_7821#1 ------------------------------------------------------------
consensus_7821#0 AA 1528
consensus_7821#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||