Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7826 cluster # 7826       Sequences # 5       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7826#0 length = 857 sequences # 5  
consensusID : consensus_7826#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 857
fasta sequence 
                              [GACTGAAGGAGTAGAAAAATAATTAGCCTGTGATCCCTCATCCCTGAACTTCCCAGAGAGGGAGAGCTCAGAGAAAAAGGGCGAGGCATGGCATCCAGCTCCAAACTGTCTGCTCTCTTCTTGACGGCAATTCTGCTCTGCCTCATCTGCACGAGGAGCCAAGCAGCAAGGCCTGAACCGGGATCCAGTGGCCACAAATCACAGGGTGTTGTTGCCTCCAGTATTGCCCATCAGAAGAGTGTTGGTAGTTCTGGAATCGGTGTGGAAATGCATCAGGGAGAACCTGATCAGGCAGTGGAGTGCAAGGGAGGGGAAGCAGAGGAAGAGTGCCTGATGAGGAGGACACTAGTTGCTCACACCGACTACATCTACACCCAAGGGAATCACAACTAGTGTAGCACAGTAGCTGTGCAAATATATGCACCAGTGCTCTTTGGCACAAGTTTCTGCCCAGGGTAGTTTGGAACACGGGAATTTTCCACGATTCTTGGAGGAATGAACTAGCTCTGACGCACAGTTTCTACAAGATCTTCTGTGAATTCCTGC-GTTCAAACAAGCAAAGAAGAAAGGCTTGATGAGGCAAACGGATACCGATCTTCTGCAGTTCATTTCTGTGGATTGTACCAACCCCCCCCCCCCCCCCTTTTTTTTTTTTGCGGGGAGTGGATTGTACCAACTTTGTAGTGGACTATCTGTACATTTCTCGCTCCTTGTTCTTCAGCCCGTATATCCATTCTCGACTTCCGGCCATCACCTTCAGATAGTACATGGAACTTTGGGATGTAAGCACTGTAGATACTGAACTTATGTATCCATCTTGCCTCACCTATAATAAAATTACAGTTTCTAATAAAAAA]

[+] EMBL CF311917             [GACTGAAGGAGTAGAAAAATAATTAGCCTGTGATCCCTCATCCCTGAACTTCCCAGAGAGGGAGAGCTCAGAGAGAAAGGGCGAGGCATGGCATCCAGCTCCAAACTGTCTGCTCTCTTCTTGACGGCAATTCTGCTCTGCCTCATCTGCACGAGGAGCCAAGCAGCAAGGCCTGAACCGGGATCCAGTGGCCACAAATCACAGGGTGTTGTTGCCTCCAGTATTGCCCATCAGAAGAGTGTTGGTAGTTCTGGAATCGGTGTGGAAATGCATCAGGGAGAACCTGATCAGGCAGTGGAGTGCAAGGGAGGGGAAGCAGAGGAAGAGTGCCTGATGAGGAGGACACTAGTTGCTCACACCGACTACATCTACACCCAAGGGAATCACAACTAGTGTAGCACAGTAGCTGTGCAAATATATGCACCGGTGCTCTTTGGCACAAGTTTCTGCCCAGGGTAGTTTGGAACACGGGAATTTTCCACGATTCTTGGAGGAATGAACTAGCTCTGACGCACAGTTTCTACAAGATCTTCTGTGAATTCCTGC GTTCAAACAAGCAAAGAAGAAAGGCTTGATGAGGCAAACGGATACCGA                                                                                                                                                                                                                                                                       ]
[+] EMBL CA754044             [                                       ATCCCTGAACTTCCCAGAGAGGGAGAGCTCAGAGAAAAAGGGCGAGGCATGGCATCCAGCTCCAAACTGTCTGCTCTCTTCTTGACGGCAATTCTGCTCTGCCTCATCTGCACGAGGAGCCAAGCAGCAAGGCCTGAACCGGGATCCAGTGGCCACAAATCACAGGGTGTTGTTGCCTCCAGTATTGCCCATCAAAAGAGTGTTGGTAGTTCTGGAATCGGTGTGGAAATGCATCAGGGAGAACCTGATCAGGCAGTGGAGTGCAAGGGAGGGGAAGCAGAGGAAGAGTGCCTGATGAGGAGGACACTAGTTGCTCACACCGACTACATCTACACCCAAGGGAATCACAACTAGTGTAGCACAGTAGCTGTGCAAATATATGCACCAGTGCTCTTTGGCACAAGTTTCTGCCCAGGGTAGTTTGGAACACGGGAATTTTCCACGATTCTTGGAGGAATGAACTAGCTCTGACGCACAGTTTCTACNAGATCTTCTGTGAATTCCTGCNGTTC AACNAGCANAGAAGAAAGGCTTGATGAGGNCAACGGATATCGATCTTCTGCAGTTCATTTCTGTGGATTGTACCAACCCCCCCCCCCCC                                                                                                                                                                                                                         ]
[+] EMBL CB682573             [                                                                       AGAAACAGGGCGAGGCATGGCATCCAGCTCCAAACTGTCTGCTCTCTTCTTGACGGCAATTCTGCTCTGCCTCATCTGCACGAGGAGCCAAGCAGCAAGGCCTGAACCGGGATCCAGTGGCCACAAATCACAGGGCGTTGTTGCCTCCACTATTGCCCATCAAAACAGTGCCGGCAGATCTGGAATCGGGGTGGAAATGCATCAGGGAGAACCTGATCAGGCAGTGGAGTGCAAGGGAGGGGAAGCAGAGGAAGAGTGCCTGATGAGGAGGACACTAGTTGCTCACACCGACTACATCTACACCCAAGGGAATCACAACTAGTGTAGCACAGTAGCTGTGCAAATATATGCACCAGTGCTCTTTGGCACAAGTTTCTGCCCAGGGTAGTTTGGAACACGGGAATTTTCCACGATTCTTGGAGGAATGAACTAGCTCTGACGCACAGTTTCTACAAGATCTTCTGTGAATTCCTGC GTTCAAACAAGCAAAGAAGAAAGGCTTGATGAGGCAAACGGATATCGATCTTCTGCAGTTCATTTCTGTGGATTGTACCAACCCCCCCCCCCCCCCCTTTTTTTTTTTTGCGGGGAGTGGATTGTACCAACTTTGTAGTGGACTATCTGTACATTTCTCGCTCCTTGTTCTTCAGCCCGTATATCCATTCTCGACTTCCGGCCATCACCTTCAGATAGTACATGGAACTTTGGGATGTAAGCACTGTAGATACTGAACTTATGTATCCATCTTGCCTCACCTATAATAAAATTACAGT             ]
[-] EMBL CB682574             [                                                                                                                                                                                                    AATCACAGGGTGTTGTTGCCTCCAGTATTGCCCATCAGAAGAGTGTTGGTAGTTCTGGAATCGGTGTGGAAATGCATCAGGGAGAACCTGATCAGGCAGTGGAGTGCAAGGGAGGGGAAGCAGAGGAAGAGTGCCTGATGAGGAGGACACTAGTTGCTCACACCGACTACATCTACACCCAAGGGAATCACAACTAGTGTAGCACAGTAGCTGTGCAAATATATGCACCAGTGCTCTTTGGCACAAGTTTCTGCCCAGGGTAGTTTGGAACACGGGAATTTTCCACGATTCTTGGAGGAATGAACTAGCTCTGACGCACAGTTTCTACAAGATCTTCTGTGAATTCCTGC GTTCAAACAAGCAAAGAAGAAAGGCTTGATGAGGCAAAC                                                                                                                                                                                                                                                                                ]
[-] EMBL CF311918             [                                                                                                                                                                                                                                                                                                                                                       CACTAGTTGCTCACACCGACTACATCTACACCCAAGGGAATCACAACTAGTGTAGCACAGTAGCTGTGCAAATATATGCACCGGTGCTCTTTGGCACAAGTTTCTGCCCAGGGTAGTTTGGAACACGGGAATTTTCCACGATTCTTGGAGGAATGAACTAGCTCTGACGCACAGTTTCTACAAGATCTTCTGTGAATTCCTGC GTTCAAACAAGCAAAGAAGAAAGGCTTGATGAGGCAAACGGATACCGATCTTCTGCAGTTCATTTCTGTGGATTGTACCAA CCCCCCNNCCCCCCCTTTTTTTTTTTTGCGGGGAGTGGATTGTACCAACTTTGTAGTGGACTATCTGTACATTTCTCGCTCCTTGTTCTTCAGCCCGTATATCCATTCTCGACTTCCGGCCATCACCTTCAGATAGTACATGGAACTTTGGGATGTAAGCACTGTAGATACTGAACTTATGTATCCATCTTGCCTCAGCTATAATAAAATTACAGTTTCTAATAAAAAA]




>consensus_7826#0
GACTGAAGGAGTAGAAAAATAATTAGCCTGTGATCCCTCATCCCTGAACTTCCCAGAGAG
GGAGAGCTCAGAGAAAAAGGGCGAGGCATGGCATCCAGCTCCAAACTGTCTGCTCTCTTC
TTGACGGCAATTCTGCTCTGCCTCATCTGCACGAGGAGCCAAGCAGCAAGGCCTGAACCG
GGATCCAGTGGCCACAAATCACAGGGTGTTGTTGCCTCCAGTATTGCCCATCAGAAGAGT
GTTGGTAGTTCTGGAATCGGTGTGGAAATGCATCAGGGAGAACCTGATCAGGCAGTGGAG
TGCAAGGGAGGGGAAGCAGAGGAAGAGTGCCTGATGAGGAGGACACTAGTTGCTCACACC
GACTACATCTACACCCAAGGGAATCACAACTAGTGTAGCACAGTAGCTGTGCAAATATAT
GCACCAGTGCTCTTTGGCACAAGTTTCTGCCCAGGGTAGTTTGGAACACGGGAATTTTCC
ACGATTCTTGGAGGAATGAACTAGCTCTGACGCACAGTTTCTACAAGATCTTCTGTGAAT
TCCTGCGTTCAAACAAGCAAAGAAGAAAGGCTTGATGAGGCAAACGGATACCGATCTTCT
GCAGTTCATTTCTGTGGATTGTACCAACCCCCCCCCCCCCCCCTTTTTTTTTTTTGCGGG
GAGTGGATTGTACCAACTTTGTAGTGGACTATCTGTACATTTCTCGCTCCTTGTTCTTCA
GCCCGTATATCCATTCTCGACTTCCGGCCATCACCTTCAGATAGTACATGGAACTTTGGG
ATGTAAGCACTGTAGATACTGAACTTATGTATCCATCTTGCCTCACCTATAATAAAATTA
CAGTTTCTAATAAAAAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)