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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_783#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1407 fasta sequence
[GGGTAACTTTTATTTCCGCTAAAAGTTTTCGGTTTTTGGGTATATCAACCATTCACCCCCCCTCTGATTGGCTTAGTTCTTATGATTCGATCCTATAAGTGGAACAGTGATCATCCAAAACCACTCGTATGCAACACGCCAGAAGAGAAGAGGAGAGAATCAATTGTCCATTGGATTATCGCAGCTGCAATCAGTGAACACGATCGATCAAACTGAATAGAGAAAAAGATTACCGGAAAGTCGAAATGCACACGGTTACGTTACGTGCCAAGCTTGGTAGCTCCCCAGATGTCGTGGTCAGCGTACAAGAGTGCAATTAGATCGTGCCATTTCAGCTGCTAGAGTGCCACTCCGAGTCGGGCTCTGCACAAAACAAAAGGAAGAATCTGTTCTGATCCAGGTGGAGACAGCGACGTGAGGAGGAGAATTACTCGAAGTCAAAAGCAGTAACCATGACAAGCAGCGACGAGAAAGAGAGGAAGGAGAGCTCTCGAGAGGAAAGGGAAGAAACGAAGAATCAAGAATCAGCTCCACCTCCCGTGCCACCGTATCCATCCACCCAAAGCCCCGGCCTTTTCATCTTGTCCCCCTCTTTTTTTTTCCCTGCCTTTTCGTCTTCGTCTTCCTCTAGCCTCACTCAGCATCTCCGTTGCACCGGCCAAGAATTCCACGCAGAGCTGGCCGGCGGCGACGGTGGACTCGCCGAGGAAGCAAGGATGTCATGAGCCGGCGGTGTGAAGGCGCCGCCGGGGGATGGAGAACCGGGAGAGGGCGGGGGCCGGCGCCGTCGGGAGCGCCGGCAGCCTCGGCCTCCGCGTCGGGCAGGCCGTCTTCTCGTCGGCGTCCCTGCTGTTCATGTCCGTCGGCGTCGAGTTCTTCAGCTATACTGCCTTCTGCTTCCTAGTTACAATAATGGGCTTGGTGATCCCCTGGAGCTGTACACTCGCCATGATCGACGTGTACTCCATACTTGTAGGGTGCCCTCTTCGGGTACCAGGTGTCATGGTCATTGTCGTCATCGGAGACTGGGTCCTGGCAATACTTTCACTAGCAGCTGCCAGCTCAAGTGCGGCGGTCATCGATCTTCTGCTCCAATTCCATGGATCTCACTGCTCTCCCAGATTCTGTGGGAGGTATCAGCTGTCGGCGATGATGGCTTTCTTGTCCTGGTTCCTAACGGCCGCTTCCTCACTCTTCAACCTCTGGTTCATCGCCTCCCGGTGACCACTGCTGATTGCTGATTCTGGATTACGCCCTAACTCCAGTATGACTCCACAATCAGTCATGGATTTGGATACCGTATGTGCATAGCACTATAGCTTGGAAAGTCTATTTATTTTGTAATTTTAGTCATTGTGGGTCTGAATGAAGAGTGGTGAAGTTACACTCCACATGAATACATGATCA]
[+] EMBL AK106933 [GGGTAACTTTTATTTCCGCTAAAAGTTTTCGGTTTTTGGGTATATCAACCATTCACCCCCCCTCTGATTGGCTTAGTTCTTATGATTCGATCCTATAAGTGGAACAGTGATCATCCAAAACCACTCGTATGCAACACGCCAGAAGAGAAGAGGAGAGAATCAATTGTCCATTGGATTATCGCAGCTGCAATCAGTGAACACGATCGATCAAACTGAATAGAGAAAAAGATTACCGGAAAGTCGAAATGCACACGGTTACGTTACGTGCCAAGCTTGGTAGCTCCCCAGATGTCGTGGTCAGCGTACAAGAGTGCAATTAGATCGTGCCATTTCAGCTGCTAGAGTGCCACTCCGAGTCGGGCTCTGCACAAAACAAAAGGAAGAATCTGTTCTGATCCAGGTGGAGACAGCGACGTGAGGAGGAGAATTACTCGAAGTCAAAAGCAGTAACCATGACAAGCAGCGACGAGAAAGAGAGGAAGGAGAGCTCTCGAGAGGAAAGGGAAGAAACGAAGAATCAAGAATCAGCTCCACCTCCCGTGCCACCGTATCCATCCACCCAAAGCCCCGGCCTTTTCATCTTGTCCCCCTCTTTTTTTTTCCCTGCCTTTTCGTCTTCGTCTTCCTCTAGCCTCACTCAGCATCTCCGTTGCACCGGCCAAGAATTCCACGCAGAGCTGGCCGGCGGCGACGGTGGACTCGCCGAGGAAGCAAGGATGTCATGAGCCGGCGGTGTGAAGGCGCCGCCGGGGGATGGAGAACCGGGAGAGGGCGGGGGCCGGCGCCGTCGGGAGCGCCGGCAGCCTCGGCCTCCGCGTCGGGCAGGCCGTCTTCTCGTCGGCGTCCCTGCTGTTCATGTCCGTCGGCGTCGAGTTCTTCAGCTATACTGCCTTCTGCTTCCTAGTTACAATAATGGGCTTGGTGATCCCCTGGAGCTGTACACTCGCCATGATCGACGTGTACTCCATACTTGTAGGGTGCCCTCTTCGGGTACCAGGTGTCATGGTCATTGTCGTCATCGGAGACTGGGTCCTGGCAATACTTTCACTAGCAGCTGCCAGCTCAAGTGCGGCGGTCATCGATCTTCTGCTCCAATTCCATGGATCTCACTGCTCTCCCAGATTCTGTGGGAGGTATCAGCTGTCGGCGATGATGGCTTTCTTGTCCTGGTTCCTAACGGCCGCTTCCTCACTCTTCAACCTCTGGTTCATCGCCTCCCGGTGACCACTGCTGATTGCTGATTCTGGATTACGCCCTAACTCCAGTATGACTCCACAATCAGTCATGGATTTGGATACCGTATGTGCATAGCACTATAGCTTGGAAAGTCTATTTATTTTGTAATTTTAGTCATTGTGGGTCTGAATGAAGAGTGGTGAAGTTACACTCCACATGAATACATGATCA]
consensusID : consensus_783#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence
[GACCTGTACACTCCCATGATCAACGTTACTCCCATACTTTAGGTCCCTCTTCGGTTACCAGTTTTCATGTTCATTTTCGTCATCGGAGACTGGGTATGTAGAAAGACACATCTCCTTGTGTTTCTCATTAAGCTTTATATTTCACCCTCTCTTGTAAAAATCAGATAGAGATCAAGAACTTTGCGTCAATCTTTTTCAGGTCCTGCCAATACTTTCACTACAGCTCCAGCTCAATCGCGGTCATCGATCTTCTGCTCCAATTCCATGGATCTCACTGCTCTCCCAGATTCTGTGGGAGGTATCACTGTCGCGATGATGGCTTTCTTGTCCTGGTTCCTAACGCCGCTTCCTCACTCTTCAACCTCTGGTTCATCGCCTCCCGGTGACCACTGCTGATTGCTGATTCTGGATTACGCCCTAACTCCAGTATGACTCCACAATCAGTCATGGATTTGGATACCGTATGTGCATAGCACTATAGCTTGGAAAGTCTATTTATTTTGTAATTTTAGTCATTGTGGGTCTGAGTGAAGAGTGGTGAAGTTACACTCCACATGAATACATGATCATCAATTTCTGAACCTAAAAAAA]
[+] EMBL BI813293 [GACCTGTACACTCCCATGATCAACGTTACTCCCATACTTTAGGTCCCTCTTCGGTTACCAGTTTTCATGTTCATTTTCGTCATCGGAGACTGGGTATGTAGAAAGACACATCTCCTTGTGTTTCTCATTAAGCTTTATATTTCACCCTCTCTTGTAAAAATCAGATAGAGATCAAGAACTTTGCGTCAATCTTTTTCAGGTCCTGCCAATACTTTCACTACAGCTCCAGCTCAATCGCGGTCATCGATCTTCTGCTCCAATTCCATGGATCTCACTGCTCTCCCAGATTCTGTGGGAGGTATCACTGTCGCGATGATGGCTTTCTTGTCCTGGTTCCTAACGCCGCTTCCTCACTCTTCAACCTCTGGTTCATCGCCTCCCGGTGACCACTGCTGATTGCTGATTCTGGATTACGCCCTAACTCCAGTATGACTCCACAATCAGTCATGGATTTGGATACCGTATGTGCATAGCACTATAGCTTGGAAAGTCTATTTATTTTGTAATTTTAGTCATTGTGGGTCTGAGTGAAGAGTGGTGAAGTTACACTCCACATGAATACATGATCATCAATTTCTGAACCTAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_783#0 GGGTAACTTTTATTTCCGCTAAAAGTTTTCGGTTTTTGGGTATATCAACCATTCACCCCC 60
consensus_783#1 ------------------------------------------------------------
consensus_783#0 CCTCTGATTGGCTTAGTTCTTATGATTCGATCCTATAAGTGGAACAGTGATCATCCAAAA 120
consensus_783#1 ------------------------------------------------------------
consensus_783#0 CCACTCGTATGCAACACGCCAGAAGAGAAGAGGAGAGAATCAATTGTCCATTGGATTATC 180
consensus_783#1 ------------------------------------------------------------
consensus_783#0 GCAGCTGCAATCAGTGAACACGATCGATCAAACTGAATAGAGAAAAAGATTACCGGAAAG 240
consensus_783#1 ------------------------------------------------------------
consensus_783#0 TCGAAATGCACACGGTTACGTTACGTGCCAAGCTTGGTAGCTCCCCAGATGTCGTGGTCA 300
consensus_783#1 ------------------------------------------------------------
consensus_783#0 GCGTACAAGAGTGCAATTAGATCGTGCCATTTCAGCTGCTAGAGTGCCACTCCGAGTCGG 360
consensus_783#1 ------------------------------------------------------------
consensus_783#0 GCTCTGCACAAAACAAAAGGAAGAATCTGTTCTGATCCAGGTGGAGACAGCGACGTGAGG 420
consensus_783#1 ------------------------------------------------------------
consensus_783#0 AGGAGAATTACTCGAAGTCAAAAGCAGTAACCATGACAAGCAGCGACGAGAAAGAGAGGA 480
consensus_783#1 ------------------------------------------------------------
consensus_783#0 AGGAGAGCTCTCGAGAGGAAAGGGAAGAAACGAAGAATCAAGAATCAGCTCCACCTCCCG 540
consensus_783#1 ------------------------------------------------------------
consensus_783#0 TGCCACCGTATCCATCCACCCAAAGCCCCGGCCTTTTCATCTTGTCCCCCTCTTTTTTTT 600
consensus_783#1 ------------------------------------------------------------
consensus_783#0 TCCCTGCCTTTTCGTCTTCGTCTTCCTCTAGCCTCACTCAGCATCTCCGTTGCACCGGCC 660
consensus_783#1 ------------------------------------------------------------
consensus_783#0 AAGAATTCCACGCAGAGCTGGCCGGCGGCGACGGTGGACTCGCCGAGGAAGCAAGGATGT 720
consensus_783#1 ------------------------------------------------------------
consensus_783#0 CATGAGCCGGCGGTGTGAAGGCGCCGCCGGGGGATGGAGAACCGGGAGAGGGCGGGGGCC 780
consensus_783#1 ------------------------------------------------------------
consensus_783#0 GGCGCCGTCGGGAGCGCCGGCAGCCTCGGCCTCCGCGTCGGGCAGGCCGTCTTCTCGTCG 840
consensus_783#1 -------------------------------------------GACCTGTACACTC-CCA 16
* ** *** *
consensus_783#0 GCGTCCCTGCTGTTCATGTCCGTCGGCGTCGAGTTCTTCAGCTATACTGCCTTCTGCTTC 900
consensus_783#1 TGATCAACGTTACTCCCATACTTTAGGTCC---CTCTTCGGTTAC-CAGTTTTCATGTTC 72
** * * ** * * * * * ***** * ** * * *** ***
consensus_783#0 CTAGTTACAATAATGGGCTTGGTGATCCCCTGGAGCTGTACA-CTCGCCATGATCGACGT 959
consensus_783#1 ATTTTCGTCATCGGAGACTGGGTA----TGTAGAAAGACACATCTCCTTGTGTTTCTCAT 128
* * ** * ** *** * ** *** *** ** * * *
consensus_783#0 GTA-CTCCATACTTGTAGGGTGCCCTCTTCGGGT--ACCAGGTGTCATGGTCATTGTCGT 1016
consensus_783#1 TAAGCTTTATATTT-CACCCTCTCTTGTAAAAATCAGATAGAGATCAAGAACTTTG-CGT 186
* ** *** ** * * * * * * ** *** * * *** ***
consensus_783#0 CATCGGAGACTGGGTCCTGGCAATACTTTCACTAGCAGCTGCCAGCTCAAGTGCGGCGGT 1076
consensus_783#1 CAATCTTTTTCAGGTCCTGCCAATACTTTCACTA-CAGCT-CCAGCTCAATCGCG---GT 241
** ******* ************** ***** ********* *** **
consensus_783#0 CATCGATCTTCTGCTCCAATTCCATGGATCTCACTGCTCTCCCAGATTCTGTGGGAGGTA 1136
consensus_783#1 CATCGATCTTCTGCTCCAATTCCATGGATCTCACTGCTCTCCCAGATTCTGTGGGAGGTA 301
************************************************************
consensus_783#0 TCAGCTGTCGGCGATGATGGCTTTCTTGTCCTGGTTCCTAACGGCCGCTTCCTCACTCTT 1196
consensus_783#1 TCA-CTGTCG-CGATGATGGCTTTCTTGTCCTGGTTCCTAACG-CCGCTTCCTCACTCTT 358
*** ****** ******************************** ****************
consensus_783#0 CAACCTCTGGTTCATCGCCTCCCGGTGACCACTGCTGATTGCTGATTCTGGATTACGCCC 1256
consensus_783#1 CAACCTCTGGTTCATCGCCTCCCGGTGACCACTGCTGATTGCTGATTCTGGATTACGCCC 418
************************************************************
consensus_783#0 TAACTCCAGTATGACTCCACAATCAGTCATGGATTTGGATACCGTATGTGCATAGCACTA 1316
consensus_783#1 TAACTCCAGTATGACTCCACAATCAGTCATGGATTTGGATACCGTATGTGCATAGCACTA 478
************************************************************
consensus_783#0 TAGCTTGGAAAGTCTATTTATTTTGTAATTTTAGTCATTGTGGGTCTGAATGAAGAGTGG 1376
consensus_783#1 TAGCTTGGAAAGTCTATTTATTTTGTAATTTTAGTCATTGTGGGTCTGAGTGAAGAGTGG 538
************************************************* **********
consensus_783#0 TGAAGTTACACTCCACATGAATACATGATCA---------------------- 1407
consensus_783#1 TGAAGTTACACTCCACATGAATACATGATCATCAATTTCTGAACCTAAAAAAA 591
*******************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||