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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7830#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1378 fasta sequence
[TTCTGAAATGTGCCCAGCATTATTCATGGTATGTCTTGAGGGCAATCTATGTAACAAAGGGAAGCTCATTGCTTCCTCCATCTTTTGCCTCAATTTTCGATGACTCTGCTTCTTCAGTTATTGATGTTTTCTTTGACCCTTCTGATGGCTCACTCAACCTTCCTGGGCTTACCATAGGCATGTTTAAGTTTATAAGCAAAAATATGAAATCAGGCGGTTTTTCAGGAACAAAGCGATACCTTGGTGATCTTGGAAAAACTGTTAAAACTGCAAGTTCAAATGCACTATTCGCTGCTGTAACAGAAATTTCAGATAGCATTGTGAGAGGCGCAGAAGCCAATGGTTTTAATGGCATGGTTACTGGCTTCCACCAAGGTATTTTAAGGTTGGCAATGGAGCCATCAGTATTAGGACAGGCTATATTGGAGGGTGGTCCTGACAGAAAGATCAAACTTGACCATAGTCCTGGACTTGATGAGCTATACATCGAAGGATACCTACAAGCCATGCTTGATGTCATGTACAAACAAGAATATCTTCGCATCAGGGTGATTGATGACCAGGTTATTCTAAAGAATCTGCCACCAAATAGTGCTCTCATAAATGAAATCGTCGACAACGTAAAAAGCTTTCTTGTGAGCAAGGGATTATTGAAAGGAGATTCTTCCACAATCCGACCCTTGCGACATCTACGAAATGAACCTGAGTGGAGGATTGCGCCGACGGTGCTCACCCTCGCAGAGCACCTGTTCGTGAGCTTCGCCGTGCGCGTGCTGCACCGGGAGGCCACCAAGGCCATCGCCGGAGTCGTCTCAAAGGCGAAGAGACCAGCCGGAGGCGGCGAAGACGACGGCAAGGGCGAGTCGCCGTCGTCGTCGTCCGTGGGAGTCCTCGCGAGGCGGAGCAGGGTGTGGAGCGTGGGGAGGTTCGCCGTCTCCGGCATGGTCGCCTACGTCGACGGCCGGCTCTGCCGCCACATACCCAACCCCATCGCCAGGAGAATCGTCAGCGGCTTCCTCTTGAGCTTCATTGACAGCAGAGACAACGA-CTAGGCAAAGTGGTCCTTTGCTCATACATAGCACTCGGTGAATGTACAAGTTGTGTATATGCTAGCCCACACAATTGCTCACTGCCATACTTGTAATTTACTCTTTTCTTTTCGATTACATCTTTTTTTTCGATTACATGAAAGACACGTGTACATACGTAATGTAACGTTGTACAGCTATTTTGACCGCGGTAGAAAGGAATGGGGAAGTAAATAAGATCAGGAAACCCCCATTTCACTTTTTATTAGAATTTGCTGTAATGGTTTTGGAAGGATGGATAGCTGGACACTTTGGAATAGGATCAAGAGCGCAATAGTCCCCCTTTTTTA]
[+] EMBL CB655923 [TTCTGAAATGTGCCCAGCATTATTCATGGTATGTCTTGAGGGCAATCTATGTAACAAAGGGAAGCTCATTGCTTCCTCCATCTTTTGCCTCAATTTTCGATGACTCTGCTTCTTCAGTTATTGATGTTTTCTTTGACCCTTCTGATGGCTCACTCAACCTTCCTGGGCTTACCATAGGCATGTTTAAGTTTATAAGCAAAAATATGAAATCAGGCGGTTTTTCAGGAACAAAGCGATACCTTGGTGATCTTGGAAAAACTGTTAAAACTGCAAGTTCAAATGCACTATTCGCTGCTGTAACAGAAATTTCAGATAGCATTGTGAGAGGCGCAGAAGCCAATGGTTTTAATGGCATGGTTACTGGCTTCCACCAAGGTATTTTAAGGTTGGCAATGGAGCCATCAGTATTAGGACAGGCTATATTGGAGGGTGGTCCTGACAGAAAGATCAAACTTGACCATAGTCCTGGACTTGATGAGCTATACATCGAAGGATACCTACAAGCCATGCTTGATGTCATGTACAAACAAGAATATCTTCGCATCAGGGTGATTGATGACCAGGTTATTCTAAAGAATCTGCCACCAAATAGTGCTCTCATAAATGAAATCGTCGACAACGTAAAAAGCTTTCTTGTGAGCAAGGGATTATTGAAAGGAGATTCTTCCACAATCCGACCCTTGCGACATCTACGAAATGAACCTGAGTGGAGGATTGCGCCGACGGTGCTCACCCTCGCAGAGCACCTGTTCGTGAGCTTCGCCGTGCGC ]
[+] EMBL CF323285 [ TGAAATGTGCCCAGCATTATTCATGGTATGTCTTGAGGGCAATCTATGTAACAAAGGGAAGCTCATTGCTTCCTCCATCTTTTGCCTCAATTTTCGATGACTCTGCTTCTTCAGTTATTGATGTTTTCTTTGACCCTTCTGATGGCTCACTCAACCTTCCTGGGCTTACCATAGGCATGTTTAAGTTTATAAGCAAAAATATGAAATCAGGCGGTTTTTCAGGAACAAAGCGATACCTTGGTGATCTTGGAAAAACTGTTAAAACTGCAAGTTCAAATGCACTATTCGCTGCTGTAACAGAAATTTCAGATAGCATTGTGAGAGGCGCAGAAGCCAATGGTTTTAATGGCATGGTTACTGGCTTCCACCAAGGTATTTTAAGGTTGGCAATGGAGCCATCAGTATTAGGACAGGCTATATTGGAGGGTGGTCCTGACAGAAAGATCAAACTTGACCATAGTCCTGGACTTGATGAGCTATACATCGAAGGATACCTACAAGCCATGCTTGATGTCATGTACAAACAAGAATATCTTCGCATCAGGGTGATTGATGACCAGGTTATTCTAAAGAATCTGCCACCAAATAGTGCTCTCATAAA ]
[-] EMBL CB655924 [ GATTCTTCCACAATCCGACCCTTGCGACATCTACGAAATGAACCTGAGTGGAGGATTGCGCCGACGGTGCTCACCCTCGCAGAGCACCTGTTCGTGAGCTTCGCCGTGCGCGTGCTGCACCGGGAGGCCACCAAGGCCATCGCCGGAGTCGTCTCAAAGGCGAAGAGACCAGCCGGAGGCGGCGAAGACGACGGCAAGGGCGAGTCGCCGTCGTCGTCGTCCGTGGGAGTCCTCGCGAGGCGGAGCAGGGTGTGGAGCGTGGGGAGGTTCGCCGTCTCCGGCATGGTCGCCTACGTCGACGGCCGGCTCTGCCGCCACATACCCAACCCCATCGCCAGGAGAATCGTCAGCGGCTTCCTCTTGAGCTTCATTGACAGCAGAGACAACGA CTAGGCAAAGTGGTCCTTTGCTCATACATAGCACTCGGTGAATGTACAAGTTGTGTATATGCTAGCCCACACAATTGCTCACTGCCATACTTGTAATTTACTCTTTTCTTTTCGATTACATCTTTTTTTTCGATTACATGAAAGACACGTGTACATACGTAATGTAACGTTGTACAGCTATTTTGACCGCGGTAGAAAGGAATGGGGAAGTAAATAAGATCAGGAAACCCCCATTTCACTTTTTATTAGAATTTGCTGTAATGGTTTTGGAAGGATGGATAGCTGGACACTTTGGAATAGGATCAAGAGCGCAATAGTCCCCCTTTTTTA]
[+] EMBL BI813572 [ TTC CCGTCTCC GCAT GTCGCCTACGTCGACGGCCGGCTCTGCCGCCACATACCCAACCCCATCGCCAGGAGAATCGTCAGCGGCTTCCTCTTGAGCTTCATTGACAGCAGAGAC ACGATCTAGGC AAGTGGTCCTTTGCTCATACATAGCACTCGGTGAATGTACAAGTTGTGTATATGCTAGCCCACAC ATTGCTCACTGCCATACTTGTAATTTACTCTTTTCTTTTCGATTACATCTTTTTTTTCGATTACATGAAAGACACGTGTACATACGTAATGTAACGTTGTACAGCTATTTTGACCGCGGTAGAAAGGAATGGGGAAGTAAATAAGATCAGGAAACCCCCATTTCACTTTTTATTAAAAaaa ]
consensusID : consensus_7830#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence
[ATCCCCACGGAGAATCGTCACCGGCTTCCTCTTGAGCTTCACTTGACACGCCACGAGACCACGANTAGCCNAAGTGGTCCTTTGCTCATACCATACCACCTCCGGTGAATGTACCAAGTTGTGTATATGCTAGCCCACCACCNATTGCTCACTCCATACTTGTAATCTTACTCTTGTTCTTTTCGATTACCTCTTTTTTTTCGATTACCTGAAAGACACCGTGTACATACGTAATGTAACGTTGTACAGCTATTTTGACCCCGGTAGAAAGGAATGGGGAAGTAAATAAGATCACGGAAACCCCCCTTTCCCTTTTTAAAAAA]
[+] EMBL BM420285 [ATCCCCACGGAGAATCGTCACCGGCTTCCTCTTGAGCTTCACTTGACACGCCACGAGACCACGANTAGCCNAAGTGGTCCTTTGCTCATACCATACCACCTCCGGTGAATGTACCAAGTTGTGTATATGCTAGCCCACCACCNATTGCTCACTCCATACTTGTAATCTTACTCTTGTTCTTTTCGATTACCTCTTTTTTTTCGATTACCTGAAAGACACCGTGTACATACGTAATGTAACGTTGTACAGCTATTTTGACCCCGGTAGAAAGGAATGGGGAAGTAAATAAGATCACGGAAACCCCCCTTTCCCTTTTTAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7830#0 TTCTGAAATGTGCCCAGCATTATTCATGGTATGTCTTGAGGGCAATCTATGTAACAAAGG 60
consensus_7830#1 ------------------------------------------------------------
consensus_7830#0 GAAGCTCATTGCTTCCTCCATCTTTTGCCTCAATTTTCGATGACTCTGCTTCTTCAGTTA 120
consensus_7830#1 ------------------------------------------------------------
consensus_7830#0 TTGATGTTTTCTTTGACCCTTCTGATGGCTCACTCAACCTTCCTGGGCTTACCATAGGCA 180
consensus_7830#1 ------------------------------------------------------------
consensus_7830#0 TGTTTAAGTTTATAAGCAAAAATATGAAATCAGGCGGTTTTTCAGGAACAAAGCGATACC 240
consensus_7830#1 ------------------------------------------------------------
consensus_7830#0 TTGGTGATCTTGGAAAAACTGTTAAAACTGCAAGTTCAAATGCACTATTCGCTGCTGTAA 300
consensus_7830#1 ------------------------------------------------------------
consensus_7830#0 CAGAAATTTCAGATAGCATTGTGAGAGGCGCAGAAGCCAATGGTTTTAATGGCATGGTTA 360
consensus_7830#1 ------------------------------------------------------------
consensus_7830#0 CTGGCTTCCACCAAGGTATTTTAAGGTTGGCAATGGAGCCATCAGTATTAGGACAGGCTA 420
consensus_7830#1 ------------------------------------------------------------
consensus_7830#0 TATTGGAGGGTGGTCCTGACAGAAAGATCAAACTTGACCATAGTCCTGGACTTGATGAGC 480
consensus_7830#1 ------------------------------------------------------------
consensus_7830#0 TATACATCGAAGGATACCTACAAGCCATGCTTGATGTCATGTACAAACAAGAATATCTTC 540
consensus_7830#1 ------------------------------------------------------------
consensus_7830#0 GCATCAGGGTGATTGATGACCAGGTTATTCTAAAGAATCTGCCACCAAATAGTGCTCTCA 600
consensus_7830#1 ------------------------------------------------------------
consensus_7830#0 TAAATGAAATCGTCGACAACGTAAAAAGCTTTCTTGTGAGCAAGGGATTATTGAAAGGAG 660
consensus_7830#1 ------------------------------------------------------------
consensus_7830#0 ATTCTTCCACAATCCGACCCTTGCGACATCTACGAAATGAACCTGAGTGGAGGATTGCGC 720
consensus_7830#1 ------------------------------------------------------------
consensus_7830#0 CGACGGTGCTCACCCTCGCAGAGCACCTGTTCGTGAGCTTCGCCGTGCGCGTGCTGCACC 780
consensus_7830#1 ------------------------------------------------------------
consensus_7830#0 GGGAGGCCACCAAGGCCATCGCCGGAGTCGTCTCAAAGGCGAAGAGACCAGCCGGAGGCG 840
consensus_7830#1 ------------------------------------------------------------
consensus_7830#0 GCGAAGACGACGGCAAGGGCGAGTCGCCGTCGTCGTCGTCCGTGGGAGTCCTCGCGAGGC 900
consensus_7830#1 ------------------------------------------------------------
consensus_7830#0 GGAGCAGGGTGTGGAGCGTGGGGAGGTTCGCCGTCTCCGGCATGGTCGCCTACGTCGACG 960
consensus_7830#1 ------------------------------------------------------------
consensus_7830#0 GCCGGCTCTGCCGCCACATACCCAACCCCATCGCCA-GGAGAATCGTCAGCGGCTTCCTC 1019
consensus_7830#1 -----------------------------ATCCCCACGGAGAATCGTCACCGGCTTCCTC 31
*** *** ************ **********
consensus_7830#0 TTGAGCTTCA-TTGACA-GCA--GAGACAACGACTAGGCAAAGTGGTCCTTTGCTCATAC 1075
consensus_7830#1 TTGAGCTTCACTTGACACGCCACGAGACCACGANTAGCCNAAGTGGTCCTTTGCTCATAC 91
********** ****** ** ***** **** *** * ********************
consensus_7830#0 -ATAGCACT--CGGTGAATGTAC-AAGTTGTGTATATGCTAGCCCACA--CAATTGCTCA 1129
consensus_7830#1 CATACCACCTCCGGTGAATGTACCAAGTTGTGTATATGCTAGCCCACCACCNATTGCTCA 151
*** *** ************ *********************** * ********
consensus_7830#0 CTGCCATACTTGTAAT-TTACTCTT-TTCTTTTCGATTACATCTTTTTTTTCGATTACAT 1187
consensus_7830#1 CT-CCATACTTGTAATCTTACTCTTGTTCTTTTCGATTACCTCTTTTTTTTCGATTACCT 210
** ************* ******** ************** ***************** *
consensus_7830#0 GAAAGACAC-GTGTACATACGTAATGTAACGTTGTACAGCTATTTTGACCGCGGTAGAAA 1246
consensus_7830#1 GAAAGACACCGTGTACATACGTAATGTAACGTTGTACAGCTATTTTGACCCCGGTAGAAA 270
********* **************************************** *********
consensus_7830#0 GGAATGGGGAAGTAAATAAGATCA-GGAAACCCCCATTTCACTTTTTATTAGAATTTGCT 1305
consensus_7830#1 GGAATGGGGAAGTAAATAAGATCACGGAAACCCCCCTTTCCCTTTTTAAAAAA------- 323
************************ ********** **** ******* * *
consensus_7830#0 GTAATGGTTTTGGAAGGATGGATAGCTGGACACTTTGGAATAGGATCAAGAGCGCAATAG 1365
consensus_7830#1 ------------------------------------------------------------
consensus_7830#0 TCCCCCTTTTTTA 1378
consensus_7830#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||