cluster # 7831

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7831 cluster # 7831 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7831#0 length = 708 sequences # 4

consensus_7831#1 length = 221 sequences # 1

consensusID : consensus_7831#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 708
fasta sequence

                              [ACATGGGACTGAAGGAGTAGAAAGTCGCGTCCCACCACGTCTCTCTCTCCTACTGTTTTCTCACCCAAAGATCC-GATTTTCACCAACTAAACCCGCTCCGATCAACGGC-GCAGCCAAGCCGGCGC-GCGTTCCAGGCAATGGCCGTCGAGACGGACAC-GGC-GAGGGC-GGCGGTGTCGTCCGAGACGGCGCCGATGTCGCCGCAGGCCGAGGCGGCGCCGCGCGCCGCCACGGCGCGCCGCGGGAACTGGCTGCGGCGCCTCATACCGCGGGACTACCTGTCGCTCAGCCGGCGCTGGAAGCTGGGCGGCGGCGCCTTCGCCGCGCCCGGCGGCGGCGCGGCGTCGAGGAGGCTGGCGTCGCTGTCGCGGTCGCTCCGGTGGAAGCGGCGGCTCCCGGGGTTCTCCCTGACCCTGCGGAGCGGCTCGGCGTCGGCGGTGGTCGACGCGGTTGCGTTCCGCGTCATGTACGTCGTGGAGGCCGTCGTGCTCGGCCTCGCGCTCTCCTGCTTCTTCCTCTGCTGCGGCTGCCACCTCTAACCTCTCCTCTCTTCACACCACGCCATAATCGGGCGTGCAACAGCTGCAACCATCTTAATTTTCCCTGCTTTTTTTTTCTTTTTTGTTCTTCTCTTGATGCTTCCGCTGTAAATTTCTACTACCTACCTTTCGGTGCTAAGATTGAAATTTGCAATCTGCAAACTGCAAAAAA]

[+] EMBL CF339185             [ACATGGGACTGAAGGAGTAGAAAGTCGCGTCCCACCACGTCTCTCTCTCCTACTGTTTTCTCACCCAAAGATCC GATTTTCACCAACTAAACCCGCTCCGATCAACGGC GCAGCCAAGCCGGCGC GCGTTCCAGGCAATGGCCGTCGAGACGGACAC GGC GAGGGC GGCGGTGTCGTCCTATACGGCGCCGATGTCGCCGCAGGCCGAGGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU181546             [                                          CTCTCTCCTACTGTTTTCTCACCCAAAGATCCAGATTTTCACCAACTAAACCCGCTCCGATCAACGGCAGCAGCCAAGCCGGCGCAGCGTTCCAGGCAATGGCCGTCGAGACGGACACAGGCNGAGGGCAGGCGGTGTCGTCCGAGACGGCGCCGATGTCGCCGCAGGCCGAGGCGGCGCCGCGCGCCGCCACGGCGCGCCGCGGGAACTGGCTGCGGCGCCTCATACCGCGGGACTACCTGTCGCTCAGCCGGCGCTGGAAGCTGGGCGGCGGCGCCTTCGCCGCGCCCGGCGGCGGCGCGGCGTCGAGGAGGCTGGCGTCGCTGTCGCGGTCGCTCCGGTGGAAGCGGCGGCTCCCGGGGTTCTCCCTGACCCTGCGGAGCGGCTCGGCGTCGGCGGTGGTCGACGCGGTTGCGTTCCGCGTCATG                                                                                                                                                                                                                                                    ]
[+] EMBL CF338277             [                                            CTCTCCTACTGTTTTCTCACCCAAAGATCC GATTTTCACCAACTAAACCCGCTCCGATCAACGGC GCAGCCAAGCCGGCGC GCGTTCCAGGCAATGGCCGTCGAGACGGACAC GGC GAGGGC GGCGGTGTCGTCCGAGACTGCGCCGATGTCGCCGCAGGCCGAGGCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU181547             [                                                                                                                                                                                                                                                                                     CTACCTGTCGCTCAGCCGGCGCTGGAAGCTGGGCGGCGGCGCCTTCGCCGCGCCCGGCGGCGGCGCGGCGTCGAGGAGGCTGGCGTCGCTGTCGCGGTCGCTCCGGTGGAAGCGGCGGCTCCCGGGGTTCTCCCTGACCCTGCGGAGCGGCTCGGCGTCGGCGGTGGTCGACGCGGTTGCGTTCCGCGTCATGTACGTCGTGGAGGCCGTCGTGCTCGGCCTCGCGCTCTCCTGCTTCTTCCTCTGCTGCGGCTGCCACCTCTAACCTCTCCTCTCTTCACACCACGCCATAATCGGGCGTGCAACAGCTGCAACCATCTTAATTTTCCCTGCTTTTTTTTTCTTTTTTGTTCTTCTCTTGATGCTTCCGCTGTAAATTTCTACTACCTACCTTTCGGTGCTAAGATTGAAATTTGCAATCTGCAAACTGCAAAAAA]




>consensus_7831#0
ACATGGGACTGAAGGAGTAGAAAGTCGCGTCCCACCACGTCTCTCTCTCCTACTGTTTTC
TCACCCAAAGATCCGATTTTCACCAACTAAACCCGCTCCGATCAACGGCGCAGCCAAGCC
GGCGCGCGTTCCAGGCAATGGCCGTCGAGACGGACACGGCGAGGGCGGCGGTGTCGTCCG
AGACGGCGCCGATGTCGCCGCAGGCCGAGGCGGCGCCGCGCGCCGCCACGGCGCGCCGCG
GGAACTGGCTGCGGCGCCTCATACCGCGGGACTACCTGTCGCTCAGCCGGCGCTGGAAGC
TGGGCGGCGGCGCCTTCGCCGCGCCCGGCGGCGGCGCGGCGTCGAGGAGGCTGGCGTCGC
TGTCGCGGTCGCTCCGGTGGAAGCGGCGGCTCCCGGGGTTCTCCCTGACCCTGCGGAGCG
GCTCGGCGTCGGCGGTGGTCGACGCGGTTGCGTTCCGCGTCATGTACGTCGTGGAGGCCG
TCGTGCTCGGCCTCGCGCTCTCCTGCTTCTTCCTCTGCTGCGGCTGCCACCTCTAACCTC
TCCTCTCTTCACACCACGCCATAATCGGGCGTGCAACAGCTGCAACCATCTTAATTTTCC
CTGCTTTTTTTTTCTTTTTTGTTCTTCTCTTGATGCTTCCGCTGTAAATTTCTACTACCT
ACCTTTCGGTGCTAAGATTGAAATTTGCAATCTGCAAACTGCAAAAAA

consensusID : consensus_7831#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 221
fasta sequence

                              [TTTTTTAATGTAAGATGATCTCCGTTAAATCGTACGGATTTAATTAAGGGCGCAGATTTACAACACGATCGAACTAATTAACCACAAGCAAAAAAATTACATACATGCATGATGGTTACGAACGCGGCCAGCTGCGGCGAGCAGAATTGGTTTAAATCTGGCAGCCGCAGCAGCAGAAGAAGCAGGAGAGCGCGAGGCCGAGCACGACGGCCTCCACCACG]

[+] EMBL CF323272             [TTTTTTAATGTAAGATGATCTCCGTTAAATCGTACGGATTTAATTAAGGGCGCAGATTTACAACACGATCGAACTAATTAACCACAAGCAAAAAAATTACATACATGCATGATGGTTACGAACGCGGCCAGCTGCGGCGAGCAGAATTGGTTTAAATCTGGCAGCCGCAGCAGCAGAAGAAGCAGGAGAGCGCGAGGCCGAGCACGACGGCCTCCACCACG]




>consensus_7831#1
TTTTTTAATGTAAGATGATCTCCGTTAAATCGTACGGATTTAATTAAGGGCGCAGATTTA
CAACACGATCGAACTAATTAACCACAAGCAAAAAAATTACATACATGCATGATGGTTACG
AACGCGGCCAGCTGCGGCGAGCAGAATTGGTTTAAATCTGGCAGCCGCAGCAGCAGAAGA
AGCAGGAGAGCGCGAGGCCGAGCACGACGGCCTCCACCACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7831#0      ACATGGGACTGAAGGAGTAGAAAGTCGCGTCCCACCACGTCTCTCTCTCCTACTGTTTTC 60
consensus_7831#1      --------------------------------------------------------TTTT 4
                                                                              *** 

consensus_7831#0      TCACCCAAAGATCCGATTTTCACCAACTAAACCCGCTCCGATCAACGGCGCAGCCAAGCC 120
consensus_7831#1      TTAATGTAAGAT--GATCTCCGTTAAATCGTACGGATTTAATTAAGGGCGCAG---ATTT 59
                      * *    *****  *** * *   ** *    * * *   ** ** *******   *   

consensus_7831#0      GGCGCGCGTTCCAGGCAATGGCCGTCGAGACGGACACGGCGAGGGCGGCGGTGTCGTCCG 180
consensus_7831#1      ACAACACGATCGAACTAATTAACCACAAG-CAAAAAAATTACATACATGCATGATGGTTA 118
                          * ** ** *   ***   *  * ** *  * *         *     **  *    

consensus_7831#0      AGACGGCGCCGATGTCGCCGCAGGCCGAGGCGGCGCCGCGC--GCCGCCACGGCGCGCCG 238
consensus_7831#1      CGAACGCGGCCA-GCTGCGGCGAGCAGAATTGGTTTAAATCTGGCAGCCGCAGCA-GCAG 176
                       **  *** * * *  ** **  ** **   **       *  ** *** * **  ** *

consensus_7831#0      CGGGAACTGGCTGCGGCGCCTCATACCGCGGGACTACCTGTCGCTCAGCCGGCGCTGGAA 298
consensus_7831#1      AAGAAGCAGGAGAGCGCGAGGCCGAGCACGACGGCCTCCACCACG--------------- 221
                        * * * **     ***   *  * * **       *   * *                

consensus_7831#0      GCTGGGCGGCGGCGCCTTCGCCGCGCCCGGCGGCGGCGCGGCGTCGAGGAGGCTGGCGTC 358
consensus_7831#1      ------------------------------------------------------------
                                                                                  

consensus_7831#0      GCTGTCGCGGTCGCTCCGGTGGAAGCGGCGGCTCCCGGGGTTCTCCCTGACCCTGCGGAG 418
consensus_7831#1      ------------------------------------------------------------
                                                                                  

consensus_7831#0      CGGCTCGGCGTCGGCGGTGGTCGACGCGGTTGCGTTCCGCGTCATGTACGTCGTGGAGGC 478
consensus_7831#1      ------------------------------------------------------------
                                                                                  

consensus_7831#0      CGTCGTGCTCGGCCTCGCGCTCTCCTGCTTCTTCCTCTGCTGCGGCTGCCACCTCTAACC 538
consensus_7831#1      ------------------------------------------------------------
                                                                                  

consensus_7831#0      TCTCCTCTCTTCACACCACGCCATAATCGGGCGTGCAACAGCTGCAACCATCTTAATTTT 598
consensus_7831#1      ------------------------------------------------------------
                                                                                  

consensus_7831#0      CCCTGCTTTTTTTTTCTTTTTTGTTCTTCTCTTGATGCTTCCGCTGTAAATTTCTACTAC 658
consensus_7831#1      ------------------------------------------------------------
                                                                                  

consensus_7831#0      CTACCTTTCGGTGCTAAGATTGAAATTTGCAATCTGCAAACTGCAAAAAA 708
consensus_7831#1      --------------------------------------------------