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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7835#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1268 fasta sequence
[ATGGCTACCACCGCCGCGACGACCATGGTGGCGGCGGTGCACCACCCCCGCCCCTGCTTCCGCGTGCGCGCCGCCTGGGACATGAACCCGAGCGCCTCCCCCAAGCCCAAGGCCAAGCCCCCGCCTCCCCCGCCGCCGCCGTTGCCGACCGCCCCCGCCCCCACCCACGCCGACCTCTTCGCCCGCCACAGCAACAGCGAGGGCCAAGTGCCAAAGAAGACCACAAGTATGGGATTTGAAAGGTGGTGGTTACCACCTCCGCCAGAGGTGAAGAAGCCCCGTTCGCTCTACAACGCTGCATCATTGGCGTACTTGGGGGACTGCATATATGAACTTTATGCTCGGAGACATTTCTTCTTTCCACCACTGAGCATCAATGACTACAACAAGCGTGCAATGGATGTCGTGAAATGTGAATCACAGGACCTTCTGCTGCACAAACTTCTTGGAGAAGATTTTCTAACTCAAGAAGAAAGGGACATACTTCGTTGGGGAAGAAATATTGTTAGCAGCAAGACACGTACCAGAAAACGTGCTGGAATTGCAGTTTATAATCGAGCATCTTCACTTGAGACACTGATTGGATATCTTTACCTCACAAATTTCAAGCGCTTGGAGCAATTGATGTTCCAGTTAGGATTTACAAGTGGTGCTTCCTCACATCATATTGCAGATGAGCTAGTCTCAGGCTTTAAGAAAAAGAACTCCACTTCTGTACAATCTCAGCAACAAGCAGCGCAGTGAATAGTTTCTGTATTGCAGCAAACATGGTATGATCTAAACAATAGTTATCTGGTGACGACAACCAGCACAAAAATTCATTTAGTTTTGGTGTATGACATCCAAAAGTGGTTGCTCAATGAATGAATAGCAATTACCGTTTGTCTGTCAAACAAGTATCGAGTGAATTGAGCAATGTACATGTATGCAAATATCATTCAGTGCAAGAAAATGGTGTCACTTCCAGGAGGGTGTGGCGGTTCTGATCTGTAGATTCTGAGGTGGCAAGCCGTTGTGTTATTACTACTCATTAGGTTGATATAGGTCGTGGTATCTTTGACACCTTGTGTATGAAGGAGCTGCGAAACTGCAAGATATGCTGAATGATTTGATGCAGAGTTTTAGCACGACTTCAGAATTAACCTGTTCTATGTGCTTCATGGATTCAGTGCACTACCATTATGAGACAGATGCCTTTGCTTTGCTGTTTGTTGTGATCTAATGTAAACAACACAATGTGGAAGTATTTGAGGCCATAAGAAAAGTGG]
[+] EMBL AK065362 [ATGGCTACCACCGCCGCGACGACCATGGTGGCGGCGGTGCACCACCCCCGCCCCTGCTTCCGCGTGCGCGCCGCCTGGGACATGAACCCGAGCGCCTCCCCCAAGCCCAAGGCCAAGCCCCCGCCTCCCCCGCCGCCGCCGTTGCCGACCGCCCCCGCCCCCACCCACGCCGACCTCTTCGCCCGCCACAGCAACAGCGAGGGCCAAGTGCCAAAGAAGACCACAAGTATGGGATTTGAAAGGTGGTGGTTACCACCTCCGCCAGAGGTGAAGAAGCCCCGTTCGCTCTACAACGCTGCATCATTGGCGTACTTGGGGGACTGCATATATGAACTTTATGCTCGGAGACATTTCTTCTTTCCACCACTGAGCATCAATGACTACAACAAGCGTGCAATGGATGTCGTGAAATGTGAATCACAGGACCTTCTGCTGCACAAACTTCTTGGAGAAGATTTTCTAACTCAAGAAGAAAGGGACATACTTCGTTGGGGAAGAAATATTGTTAGCAGCAAGACACGTACCAGAAAACGTGCTGGAATTGCAGTTTATAATCGAGCATCTTCACTTGAGACACTGATTGGATATCTTTACCTCACAAATTTCAAGCGCTTGGAGCAATTGATGTTCCAGTTAGGATTTACAAGTGGTGCTTCCTCACATCATATTGCAGATGAGCTAGTCTCAGGCTTTAAGAAAAAGAACTCCACTTCTGTACAATCTCAGCAACAAGCAGCGCAGTGAATAGTTTCTGTATTGCAGCAAACATGGTATGATCTAAACAATAGTTATCTGGTGACGACAACCAGCACAAAAATTCATTTAGTTTTGGTGTATGACATCCAAAAGTGGTTGCTCAATGAATGAATAGCAATTACCGTTTGTCTGTCAAACAAGTATCGAGTGAATTGAGCAATGTACATGTATGCAAATATCATTCAGTGCAAGAAAATGGTGTCACTTCCAGGAGGGTGTGGCGGTTCTGATCTGTAGATTCTGAGGTGGCAAGCCGTTGTGTTATTACTACTCATTAGGTTGATATAGGTCGTGGTATCTTTGACACCTTGTGTATGAAGGAGCTGCGAAACTGCAAGATATGCTGAATGATTTGATGCAGAGTTTTAGCACGACTTCAGAATTAACCTGTTCTATGTGCTTCATGGATTCAGTGCACTACCATTATGAGACAGATGCCTTTGCTTTGCTGTTTGTTGTGATCTAATGTAAACAACACAATGTGGAAGTATTTGAGGCCATAAGAAAAGTGG]
[+] EMBL AK105787 [ TACCACCGCCGCGACGACCATGGTGGCGGCGGTGCACCACCCCCGCCCCTGCTTCCGCGTGCGCGCCGCCTGGGACATGAACCCGAGCGCCTCCCCCAAGCCCAAGGCCAAGCCCCCGCCTCCCCCGCCGCCGCCGTTGCCGACCGCCCCCGCCCCCACCCACGCCGACCTCTTCGCCCGCCACAGCAACAGCGAGGGCCAAGTGCCAAAGAAGACCACAAGTATGGGATTTGAAAGGTGGTGGTTACCACCTCCGCCAGAGGTGAAGAAGCCCCGTTCGCTCTACAACGCTGCATCATTGGCGTACTTGGGGGACTGCATATATGAACTTTATGCTCGGAGACATTTCTTCTTTCCACCACTGAGCATCAATGACTACAACAAGCGTGTAATGGATGTCGTGAAATGTGAATCACAGGACCTTCTGCTGAACAAACTTCTTGGAGAAGATTTTCTAACTCAAGAAGAAAGGGACATACTTCGTTGGGGAAGAAATATTGTTAGCAGCAAGACACGTACCAGAAAACGTGCTGGAATTGCAGTTTATAATCGAGCATCTTCACTTGAGACACTGATTGGATATCTTTACCTCACAAATTTCAAGCGCTTGGAGCAATTGATGTTCCAGTTAGGATTTACAAGTGGTGCTTCCTCACATCATATTGCAGATGAGCTAGTCTCAGGCTTTAAGAAAAAGAACTCCACTTCTGTACAATCTCAGCAACAAGCAGCGCAGTGAATAGTTTCTGTATTGCAGCAAACATGGTATGATCTAAACAATAGTTATCTGGTGACCACAACCAGCACAAAAATTCATTTAGTTTTGGTGTATGACATCCAAAAGTGGTTGCTCAATGAATGAATAGCAATTACCGTTTGTCTGTCAAACAAGTATCGAGTGAATTGAGCAATGTACATGTATGCAAATATCATTCAGTGCAAGAAAATGGTGTCACTTCCAGGAGGGTGTGGCGGTTCTGATCTGTAGATTCTGAGGTGGCAAGCCGTTGTGTTATTACTACTCATTAGGTTGATATAGGTCGTGGTATCTTTGACACCTTGTGTATGAAGGAGCTGCGAAACTGCAAGATATGCTGAATGATTTGATGCAGAG ]
consensusID : consensus_7835#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 950 fasta sequence
[GGTCTGAAAATGTCTGAATTTGATCGACGCATGGGTTGTTGATTTGGTTTGCAGTGCCAAAGAAGACCACAAGTATGGGCTTTGAAAGGTGGTGGCTGCCGCCTCCGCCGGAGGTGAAGAAGCCCCGTTCGCTCTACAACGCCGCGTCCTTGGCGTACTTGGGGGACTGCATATATGAACTTTATGCTCGGAGACATTTCTTCTTTCCACCACTGAGCATCAATGACTACAACAAGCGTGTAATGGATGTCGTGAAATGTGAATCACAGGACCTTCTGCTGAACAAACTTCTCGGAGAAGATTTTCTAACTCAAGAAGAAAGGGACATACTTCGTTGGGGAAGAAATATCGTTAGCAGCAAGACACGTACCAGAAAACGTGCTGGAATTGCAGTTTACAATCGAGCATCTTCACTTGAGACACTGATTGGATATCTTTACCTCACAAATTTCAAGCGTCTGGAGCAACTGATGTTTCAATTAGGGTTTACAAGTGGCGCTTCTTCACAACATATTGCAGATGAGCTTCGCTCGAGTTTCCAGACAAAGAACTCGTCTAGATCTGTACAGTCTAAGCAAGAAGCAGCAAAATGAATAGTTTAGAATGTAGTGACTGATACAAGCACATGTGAATTCTGGAACATGAGATCCAACGGTCACACACACAGTGAGTGATTCGCGATTAATGTTTGGCTGTTTGTCAAAAAAAAGCTAGAGTGAATTGAACAATATATGATGTATGCATTACTGGAGGCGGCCGCAAGATAATGGCTCAACGTCAGTGAGCATTACTGTTTGGCTGTTTTGCTGTTTTGATCAGCCCATTTTGAGGTGCTAAAAA-ATGTGTTTCTACTCATTGAGGGTGATGTAGGCCATGGGTGTTATCAAGACCTTGTGTATTTGTTCAATTGTGTAAGG-G-CCATTGCTAACAGAAGCTGTGCTTGCTATCAA]
[+] EMBL CA762610 [GGTCTGAAAATGTCTGAATTTGATCGACGCATGGGTTGTTGATTTGGTTTGCAGTGCCAAAGAAGACCACAAGTATGGGCTTTGAAAGGTGGTGGCTGCCGCCTCCGCCGGAGGTGAAGAAGCCCCGTTCGCTCTACAACGCCGCGTCCTTGGCGTACTTGGGGGACTGCATATATGAACTTTATGCTCGGAGACATTTCTTCTTTCCACCACTGAGCATCAATGACTACAACAAGCGTGTAATGGATGTCGTGAAATGTGAATCACAGGACCTTCTGCTGAACAAACTTCTCGGAGAAGATTTTCTAACTCAAGAAGAAAGGGACATACTTCGTTGGGGAAGAAATATCGTTAGCAGCAAGACACGTACCAGAAAACGTGCTGGAATTGCAGTTTACAATCGAGCATCTTCACTTGAGACACTGATTGGATATCTTTACCTCACAAATTTCAAGCGTCTGGAGCAACTGATGTTTCAATTAGGGTTTACAAGTGGCGCTTCTTCACAACATATTGCAGATGAGCTTCGCTCGAGTTTCCAGACAAAGAACTCGTCTAGATCTGTACAGTCTAAGCAAGAAGCAGCAAAATGAATAGTTTAGAATGTAGTGACTGATACAAGCACATGTGAATTCTGGAACATGAGATCCAACGGCCACACGCACAGTGAGTGATTCGCGATTACTGTTTGGCTGTTTGTCAAAAAAAAGCTAGAGTGAATTGAACAATATATGAGGTATGC ]
[-] EMBL CB665960 [ ATATGAACTTTATGCTCGGAGACATTT TTCTTTCCACCACTGAGCATCAATGACTACAACAAGCGTGTAATGGATGTCGTGAAATGTGAATCACAGGACCTTCTGCTGAACAAACTTCTCGGAGAAGATTTTCTAACTCAAGAAGAAAGGGACATACTTCGTTGGGGAAGAAATATCGTTAGCAGCAAGACACGTACCAGAAAACGTGCTGGAATTGCAGTTTACAATCGAGCATCTTCACTTGAGACACTGATTGGATATCTTTACCTCACAAATTTCAAGCGTCTGGAGCAACTGATGTTTCAATTAGGGTTTACAAGTGGCGCTTCTTCACAACATATTGCAGATGAGCTTCGCTCGAGTTTCCAGACAAAGAACTCGTCTAGATCTGTACAGTCTAAGCAAGAAGCAGCAAAATGAATAGTTTAGAATGTAGTGACTGATACAAGCACATGTGAATTCTGGAACATGAGATCCAACGGTCACACACACAGTGAGTGATTCGCGATTAATGTTTGGCTGTTTGTCAAAAAAAAGCTAGAGTGAATTGAACAATATATGATGTATGCATTACTGGAGGCGGCCGCAAGATAATGGCTCAACGTCAGTGAGCATTACTGTTTGGCTGTTTTGCTGTTTTGATCAGCCCATTTTGAGGTGCTAAAAA ATGTGTTTCTACTCATTGAGGGTGATGTAGGCCATGGGTGTTATCAAGACCTTGTGTATTTGTTCAATTGTGTAAGG G CCATTGCTAACAGAAGCTGTGCTTGCTATCAA]
[-] EMBL CB680585 [ GACTACAACAAGCGTGTAATGGATGTCGTGAAATGTGAATCACAGGACCTTCTGTTGAACAAACTTCTCGGAGAAGATTTTCTAACTCAAGAAGAAAGGGACATACTTCGTTGGGGAAGAAATATCGTTAGCAGCAAGACACGTACCAGAAAACGTGCTGGAATTGCAGTTTACAATCGAGCATCTTCACTTGAGACACTGATTGGATATCTTTACCTCACAAATTTCAAGCGTCTGGAGCAACTGATGTTTCAATTAGGGTTTACAAGTGGCGCTTCTTCACAACATATTGCAGATGAGCTTCGCTCGAGTTTCCAGACAAAGAACTCGTCTAGATCTGTACAGTCTAAGCAAGAAGCAGCAAAATGAATAGTTTAGAATGTAGTGACTGATACAAGCACATGTGAATTCTGGAACATGAGATCCAACGGTCACACACACAGTGAGTGATTCGCGATTAATGTTTGGCTGTTTGTCAAAAAAAAGCTAGAGTGAATTGAACAATATATGATGTATGCATTACTGGAGGCGGCCGCAAGATAATGGCTCAACGTCAGTGAGCATTACTGTTTGGCTGTTTTGCTGTTTTGATCAGCCCATTTTGAGGTGCTAAAAAGATGTGTTTCTCCTCATTGAGGGTGATGTAGGCCATTGGTGTTATCAAGACCTTG ATATTGGTTCACTTG G AGGGTGCCCATTGTTAACAc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7835#0 ATGGCTACCACCGCCGCGACGACCATGGTGGCGGCGGTGCACCACCCCCGCCCCTGCTTC 60
consensus_7835#1 ------------------------------------------------------------
consensus_7835#0 CGCGTGCGCGCCGCCTGGGACATGAACCCGAGCGCCTCCCCCAAGCCCAAGGCCAAGCCC 120
consensus_7835#1 ------------------------------------------------------------
consensus_7835#0 CCGCCTCCCCCGCCGCCGCCGTTGCCGACCGCCCCCGCCCCCACCCACGCCGACCTCTTC 180
consensus_7835#1 -----------------------------------GGTCTGAAAATGTCTGAATTTGATC 25
* * * * * **
consensus_7835#0 GCCCGCCACAGCAACAGCGAGGGCCA-AGTGCCAAAGAAGACCACAAGTATGGGATTTGA 239
consensus_7835#1 GACGCATGGGTTGTTGATTTGGTTTGCAGTGCCAAAGAAGACCACAAGTATGGGCTTTGA 85
* * ** *************************** *****
consensus_7835#0 AAGGTGGTGGTTACCACCTCCGCCAGAGGTGAAGAAGCCCCGTTCGCTCTACAACGCTGC 299
consensus_7835#1 AAGGTGGTGGCTGCCGCCTCCGCCGGAGGTGAAGAAGCCCCGTTCGCTCTACAACGCCGC 145
********** * ** ******** ******************************** **
consensus_7835#0 ATCATTGGCGTACTTGGGGGACTGCATATATGAACTTTATGCTCGGAGACATTTCTTCTT 359
consensus_7835#1 GTCCTTGGCGTACTTGGGGGACTGCATATATGAACTTTATGCTCGGAGACATTTCTTCTT 205
** ********************************************************
consensus_7835#0 TCCACCACTGAGCATCAATGACTACAACAAGCGTGCAATGGATGTCGTGAAATGTGAATC 419
consensus_7835#1 TCCACCACTGAGCATCAATGACTACAACAAGCGTGTAATGGATGTCGTGAAATGTGAATC 265
*********************************** ************************
consensus_7835#0 ACAGGACCTTCTGCTGCACAAACTTCTTGGAGAAGATTTTCTAACTCAAGAAGAAAGGGA 479
consensus_7835#1 ACAGGACCTTCTGCTGAACAAACTTCTCGGAGAAGATTTTCTAACTCAAGAAGAAAGGGA 325
**************** ********** ********************************
consensus_7835#0 CATACTTCGTTGGGGAAGAAATATTGTTAGCAGCAAGACACGTACCAGAAAACGTGCTGG 539
consensus_7835#1 CATACTTCGTTGGGGAAGAAATATCGTTAGCAGCAAGACACGTACCAGAAAACGTGCTGG 385
************************ ***********************************
consensus_7835#0 AATTGCAGTTTATAATCGAGCATCTTCACTTGAGACACTGATTGGATATCTTTACCTCAC 599
consensus_7835#1 AATTGCAGTTTACAATCGAGCATCTTCACTTGAGACACTGATTGGATATCTTTACCTCAC 445
************ ***********************************************
consensus_7835#0 AAATTTCAAGCGCTTGGAGCAATTGATGTTCCAGTTAGGATTTACAAGTGGTGCTTCCTC 659
consensus_7835#1 AAATTTCAAGCGTCTGGAGCAACTGATGTTTCAATTAGGGTTTACAAGTGGCGCTTCTTC 505
************ ******** ******* ** ***** *********** ***** **
consensus_7835#0 ACATCATATTGCAGATGAGCTAGTCTCAGGCTTTAAGAAAAAGAACTCCACT---TCTGT 716
consensus_7835#1 ACAACATATTGCAGATGAGCTTCGCTCGAGTTTCCAGACAAAGAACTCGTCTAGATCTGT 565
*** ***************** *** * ** *** ********* ** *****
consensus_7835#0 ACAATCTCAGCAACAAGCAGCGCAGTGAATAGTTTCTGTATTGCAGCAAACATGGTATGA 776
consensus_7835#1 ACAGTCTAAGCAAGAAGCAGCAAAATGAATAGTT--TAGAATGTAGTGA--CTGATACAA 621
*** *** ***** ******* * ********* * * ** ** * ** ** *
consensus_7835#0 TCTAAACAATAGTTATCTGGTGACGACAACCAGCACAAAAATTCATTTAGTTTTGGTGTA 836
consensus_7835#1 GC-ACATGTGAATTCTG-GAACATGAGATCCA--ACGGTCACACACACAGTG--AGTGAT 675
* * * * ** * * * ** * *** ** * ** *** ***
consensus_7835#0 TGACATCCAAAAGTGGTTGCTCAATGAATGAATAGCAATTACCGTTTGTCTGTCAAACAA 896
consensus_7835#1 TCGCGATTAA---TGTTTGGCTGTTTGTCAAAAAAAAGCTAGAGTGAATTGAACAA-TAT 731
* * ** ** *** * ** * * ** ** * *** *
consensus_7835#0 GTATCGAGTGAATTGAGCAATGTACATGTATGCAAATATCATTCAGTGCAAGAAAATGGT 956
consensus_7835#1 ATGATGTATGCATTACTGGAGGCGGCCGCAAGATAATGGC--TCAACGTCAGTGAGCATT 789
* * ** *** * * * * * *** * *** * ** * *
consensus_7835#0 GTCACTTCCAGGAGGGTGTGGCGGTTCTGATCTGTAGATTCTGAGGTGGCAAGCCGTTGT 1016
consensus_7835#1 ACTGTTT----GGCTGTTTTGCTGTTTTGATCAGCCCATTTTGAGGTGCTAAAAAATG-- 843
** * ** * ** *** ***** * *** ******* ** *
consensus_7835#0 GTTATTACTACTCATT-AGGTTGATATAGGTCGTGG-TATCTTTGACACCTTGTGTATGA 1074
consensus_7835#1 --TGTTTCTACTCATTGAGGGTGATGTAGGCCATGGGTGTTATCAAGACCTTGTGTATTT 901
* ** ********* *** **** **** * *** * * * * ***********
consensus_7835#0 AGG-AGCTGCGAAACTGCAAGATATGCTGAATGATTTGATGCAGAGTTTTAGCACGACTT 1133
consensus_7835#1 GTTCAATTGTGTAAGGGCCAT---TGCTAACAGAAGCTGTGCTTGCTATCAA-------- 950
* ** * ** ** * **** * ** *** * * *
consensus_7835#0 CAGAATTAACCTGTTCTATGTGCTTCATGGATTCAGTGCACTACCATTATGAGACAGATG 1193
consensus_7835#1 ------------------------------------------------------------
consensus_7835#0 CCTTTGCTTTGCTGTTTGTTGTGATCTAATGTAAACAACACAATGTGGAAGTATTTGAGG 1253
consensus_7835#1 ------------------------------------------------------------
consensus_7835#0 CCATAAGAAAAGTGG 1268
consensus_7835#1 ---------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||