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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7836#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1123 fasta sequence
[ACCACTAATCCGAAGCGGCTCCCACGCCCGCCGCCCCGCCGCCACGCCGCCATGCGGCTACTCCCCTACGCGCCGTCGCCGCGGCCGCCGCAGCGCTCGCTCGCCACCCGCAGGACCAAGCCAGGGCCGCCGTGCGCGCTCCCCTTCCCCGACGCCCTCCGCGCCGCTGCCGCGGCCACGGCGGCCGCCATGTCCATCTCCCTCTCCCTCCTCACCGGCGACGCCGTGGGGGCGGAGCGGCCGCGGGGCCCCGAGCTCTGCCGCGACGGGGCCGCCGCCGAGACCAAGGAGGAGGTGAGGAGGAGCGAAGTGGTGACGAACGAGCAGCTCGTGGAGGAGGCGTGGGAGGTGGTCAACGAGGGGTTCCTCCCGGACGCCGGAAGCCGTCCCTGGTCGCCGGAGATGTGGATGAAAAAGAAGCAAGATATTGTCCAAACCTCAATCAGATCCCGTTCCAGAGCCCATGATATCATTCAGAAAATGCTGGCTAACCTGGGTGACCCATACACAAGGTTCCTGACTCCCTCCGAATTCTGATGATATTTTGCATGTGTTAAATCAATCTGGTGAAGTTCTCCAAGATGTCAAAATATGACATGACGGGAATAGGATTAAACTTGAGAGAAATTCCTGACGGCAATGGCTCTTCCAAGTTGATGGTATTAGGGCTCATATTAGATGGGCCTGCCCACTCTGCTGGTGTTAGACAGGGTGACGAACTTTTGTCAGTCAATGGCATTGATGTTATGGGTAAATCTGCATTTGATGTGTCATCCATGTTGCAAGGTCCAAAAGATA-CTTTTGTTACAATTAAGGTTAAGCATGGGAA-CTGTGGTCCTGTTGAGCCATTGAAGGTACAGAGACAACTGGTTGCTCGCACACCAGTTTTCTATCGATTGGAGAAAAGAGAAAATGAGGATTCAGCTATAGGATATATTCACATTAAAGAATTCAATGCAGTGGCCAAAAAAGATTTGGTTAGTGCACTAAAGCGTCTACAGAACTCAGGTGCCTCCTATTTTGTTTTGGATTTGAGGGACAATCTTGGTGGACTAGTCCCAGCTGGGATAGAGACTGCAAAGCTCTTCCTGAAGTAAGGAGACACGGTGATTTATACTGCTGG]
[+] EMBL CB636185 [ACCACTAATCCGAAGCGGCTCCCACGCCCGCCGCCCCGCCGCCACGCCGCCATGCGGCTACTCCCCTACGCGCCGTCGCCGCGGCCGCCGCAGCGCTCGCTCGCCACCCGCAGGACCAAGCCAGGGCCGCCGTGCGCGCTCCCCTTCCCCGACGCCCTCCGCGCCGCTGCCGCGGCCACGGCGGCCGCCATGTCCATCTCCCTCTCCCTCCTCACCGGCGACGCCGTGGGGGCGGAGCGGCCGCGGGGCCCCGAGCTCTGCCGCGACGGGGCCGCCGCCGAGACCAAGGAGGAGGTGAGGAGGAGCGAAGTGGTGACGAACGAGCAGCTCGTGGAGGAGGCGTGGGAGGTGGTCAACGAGGGGTTCCTCCCGGACGCCGGAAGCCGTCCCTGGTCGCCGGAGATGTG ]
[+] EMBL CB642880 [ TGGTGACTAACGAGCAGCTCGTGGAGGAGGCGTGGGAGGTGGTCAACGAGGGGTTCCTCCCGGACGCCGGAAGCCGTCCCTGGTCGCCGGAGATGTGGATGAAAAAGAAGCAAGATATTGTCCAAACCTCAATCAGATCCCGTTCCAGAGCCCATGATATCATTCAGAAAATGCTGGCTAACCTGGGTGACCCATACACAAGGTTCCTGACTCCCTCCGAATTCTGATGATATTTTGCATGTGTTAAATCAATCTGGTGAAGTTCTCCAAGATGTCAAAATATGACATGACGGGAATAGGATTAAACTTGAGAGAAATTCCTGACGGCAATGGCTCTTCCAAGTTGATGGTATTAGGGCTCATATTAGATGGGCCTGCCCACTCTGCTGGTGTTAGACAGGGTGACGAACTTTTGTCAGTCAATGGCATTGATGTTATGGGTAAATCTGCATTTGATGTGTCATCCATGTTGCAAGGTCCAAAAGATA CTTTTGTTACAATTAAGGTTAAGCATGGGAA CTGTGGTCCTGTTGAGCCATTGAAGGTACAGAGACAACTGGTTGCTCGCACACCAGTTTTCTATCGATTGGAGAAAAGAGAAAATGAGGATTCAGCTATAGGATATATTCACATTAAAGAATTCAATGCAGTGGCCAAAAAAGATTTGGTTAGTGCACTAAAGCGTCTACAGAACTCAGGTGCCTCCTATTTTGTTTTGGATTTGAGGGACAATCTTGGTGGACTAGTCCCAGCTGGGATAGAGACTGCAAAGCTCTTCCTGAAGTAAGGAGACACGGTGATTTATACTGCTGG]
[+] EMBL CF323200 [ AGCTCGTGGAGGAGGCGTGGGAGGTGGTCAACGAGGGGTTCCTCCCGGACGCCGGAAGCCGTCCCTGGTCGCCGGAGATGTGGATGAAAAAGAAGCAAGATATTGTCCAAACCTCAATCAGATCCCGTTCCAGAGCCCATGATATCATTCAGAAAATGCTGGCTAACCTGGGTGACCCATACACAAGGTTCCTGACTCCCTCCGAATTCTGATGATATTTTGCATGTGTTAAATCAATCTGGTGAAGTTCTCCAAGATGTCAAAATATGACATGACGGGAATAGGATTAAACTTGAGAGAAATTCCTGACGGCAATGGCTCTTCCAAGTTGATGGTATTAGGGCTCATATTAGATGGGCCTGCCCACTCTGCTGGTGTTAGACAGGGTGACGAACTTTTGTCAGTCAATGGCATTGATGTTATGGGTAAATCTGCATTTGATGTGTCATCCATGTTGCAAGGTCCAAAAGATACCTTTTGTTACAATTAAGGTTAAGCATGGGAACCTGTGGTCCTGTTGAGCCATTGAAGGTACAGAGACAACTGGTTGCTCGCACACCAGTTTTCTATCGAT ]
consensusID : consensus_7836#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence
[TTCTATGCATAGAACTTATTGCAAATGGCCATGTAGTATCTAATTCTTAAGCCAAAACTGCTATGCATGTACATATAACTATTTTCCTGGCTCAAACTGTGAGCATCAGGAGAACAACTTAAAATATTGTTTCCCCTTCTGCAAATTGGCCATCTAACGATGCTATTTCAGAACTTAAAATATCGTTTTCCCTTCTGCAAATTGGCCATCTAAGGATGTTATTTCTGCTGATTCTGTATGAAACTATTTTGATGTTACAAAATTTTCCGATATTATTTGTTGATATTCCATTAAAATTATTATCGGTAGATATAACTTAATATAATTACATTGGATGGTGGCATGTTATATCCACTAACATATGTTCTCTTGTGCAGCACTAAAGCGTCTACAGAACTCAGGTGCCTCCTATTTTGTTTTGGATTTGAGGGACAATCTTGGTGGACTAGTCCAAGTATGCTTTTTTCATTTCAATTATATAACCATGTCAGTCTTTGGTCTGCTAAACAAAATTGTGTTTGTGGGTGCCATTCTTTTCCTTTGAAGTTCTTGAGTTGTAAGCTTCTTGAAACAGTTGAGGCTTATGCATTTGGATAATGAAAGACACTG]
[+] EMBL CF325751 [TTCTATGCATAGAACTTATTGCAAATGGCCATGTAGTATCTAATTCTTAAGCCAAAACTGCTATGCATGTACATATAACTATTTTCCTGGCTCAAACTGTGAGCATCAGGAGAACAACTTAAAATATTGTTTCCCCTTCTGCAAATTGGCCATCTAACGATGCTATTTCAGAACTTAAAATATCGTTTTCCCTTCTGCAAATTGGCCATCTAAGGATGTTATTTCTGCTGATTCTGTATGAAACTATTTTGATGTTACAAAATTTTCCGATATTATTTGTTGATATTCCATTAAAATTATTATCGGTAGATATAACTTAATATAATTACATTGGATGGTGGCATGTTATATCCACTAACATATGTTCTCTTGTGCAGCACTAAAGCGTCTACAGAACTCAGGTGCCTCCTATTTTGTTTTGGATTTGAGGGACAATCTTGGTGGACTAGTCCAAGTATGCTTTTTTCATTTCAATTATATAACCATGTCAGTCTTTGGTCTGCTAAACAAAATTGTGTTTGTGGGTGCCATTCTTTTCCTTTGAAGTTCTTGAGTTGTAAGCTTCTTGAAACAGTTGAGGCTTATGCATTTGGATAATGAAAGACACTG]
consensusID : consensus_7836#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence
[TTTTGTCAGTCAATGGCATTGATGTTATGGGTAAATCTGCATTTGATGTGTCATCCATGTTGCAAGGTTAAGCATGGGAACTGTGGTCCTGTTGAGCCATTGAAGGTACAGAGACAACTGGTTGCTCGCACACCAGTTTTCTATCGATTGGAGAAAAGAGAAAATGAGGATTCAGCTATAGGATATATTCACATTAAAGAATTCAATGCAGTGGCCAAAAAAGATTTGGTTAGTGCACTAAAGCGTCTACAGAACTCAGGTGCCTCCTATTTTGTTTGGATTTGAGGGACAATCTTGGTGGACTAGTCCAAGTATGCTTTTTTCATTTCAATTATATAACCATGTCAGTCTTTGGTCTGCTAAACAAAATTGTGTTTGTGGGTGCCATTCTTTTCCTTTGAAGTTCTTGAGTTGTAAGCTTCTTGAAACAGTTGAGGCTTATGCATTTGGATAATGAAAGACACTGATATAATTTATTTGGATGGNGTTATTCTTACTCATGGTACTTTTGTTTACTTTAAAGGCTGGGATAGAGACTGCAAAGCTCTT]
[+] EMBL CF323529 [TTTTGTCAGTCAATGGCATTGATGTTATGGGTAAATCTGCATTTGATGTGTCATCCATGTTGCAAGGTTAAGCATGGGAACTGTGGTCCTGTTGAGCCATTGAAGGTACAGAGACAACTGGTTGCTCGCACACCAGTTTTCTATCGATTGGAGAAAAGAGAAAATGAGGATTCAGCTATAGGATATATTCACATTAAAGAATTCAATGCAGTGGCCAAAAAAGATTTGGTTAGTGCACTAAAGCGTCTACAGAACTCAGGTGCCTCCTATTTTGTTTGGATTTGAGGGACAATCTTGGTGGACTAGTCCAAGTATGCTTTTTTCATTTCAATTATATAACCATGTCAGTCTTTGGTCTGCTAAACAAAATTGTGTTTGTGGGTGCCATTCTTTTCCTTTGAAGTTCTTGAGTTGTAAGCTTCTTGAAACAGTTGAGGCTTATGCATTTGGATAATGAAAGACACTGATATAATTTATTTGGATGGNGTTATTCTTACTCATGGTACTTTTGTTTACTTTAAAGGCTGGGATAGAGACTGCAAAGCTCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7836#0 ACCACTAATCCGAAGCGGCTCCCACGCCCGCCGCCCCGCCGCCACGCCGCCATGCGGCTA 60
consensus_7836#2 ------------------------------------------------------------
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 CTCCCCTACGCGCCGTCGCCGCGGCCGCCGCAGCGCTCGCTCGCCACCCGCAGGACCAAG 120
consensus_7836#2 ------------------------------------------------------------
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 CCAGGGCCGCCGTGCGCGCTCCCCTTCCCCGACGCCCTCCGCGCCGCTGCCGCGGCCACG 180
consensus_7836#2 ------------------------------------------------------------
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 GCGGCCGCCATGTCCATCTCCCTCTCCCTCCTCACCGGCGACGCCGTGGGGGCGGAGCGG 240
consensus_7836#2 ------------------------------------------------------------
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 CCGCGGGGCCCCGAGCTCTGCCGCGACGGGGCCGCCGCCGAGACCAAGGAGGAGGTGAGG 300
consensus_7836#2 ------------------------------------------------------------
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 AGGAGCGAAGTGGTGACGAACGAGCAGCTCGTGGAGGAGGCGTGGGAGGTGGTCAACGAG 360
consensus_7836#2 ------------------------------------------------------------
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 GGGTTCCTCCCGGACGCCGGAAGCCGTCCCTGGTCGCCGGAGATGTGGATGAAAAAGAAG 420
consensus_7836#2 ------------------------------------------------------------
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 CAAGATATTGTCCAAACCTCAATCAGATCCCGTTCCAGAGCCCATGATATCATTCAGAAA 480
consensus_7836#2 ------------------------------------------------------------
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 ATGCTGGCTAACCTGGGTGACCCATACACAAGGTTCCTGACTCCCTCCGAATTCTGATGA 540
consensus_7836#2 ------------------------------------------------------------
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 TATTTTGCATGTGTTAAATCAATCTGGTGAAGTTCTCCAAGATGTCAAAATATGACATGA 600
consensus_7836#2 ------------------------------------------------------------
consensus_7836#1 -----------------------------------------TTCTATGCATAGAACTTAT 19
consensus_7836#0 CGGGAATAGGATTAAACTTGAGAGAAATTCCTGACGGCAATGGCTCTTCCAAGTTGATGG 660
consensus_7836#2 ------------------------------------------------------------
consensus_7836#1 TGCAAATGGCCATGTAGT---ATCTAATTCTTAAGCCAAAACTGCTATGCATGTACATAT 76
consensus_7836#0 TATTAGGGCTCATATTAGATGGGCCTGCCCACTCTGCTGGTGTTAGACAGGGTGACGAAC 720
consensus_7836#2 ------------------------------------------------------------
consensus_7836#1 AACTA----TTTTCCTGGCTCAAACTGTGAGCATCAGGAGAACAACTTAAAATATTGTTT 132
consensus_7836#0 TTTTGTCAGTCAATGGCATTGATGTTATGGGTAAATCTGCATTTGATGTGTCAT---CCA 777
consensus_7836#2 TTTTGTCAGTCAATGGCATTGATGTTATGGGTAAATCTGCATTTGATGTGTCAT---CCA 57
consensus_7836#1 CCCCTTCTGCAAATTGGCCATCTAACGATGCTATTTCAGAACTTAAAATATCGTTTTCCC 192
** * *** * * * ** ** * * ** * * ** * **
consensus_7836#0 TGTTGCAAGGTCCAAAAGATACTTTTGTTACAATTAAGGTTAAGCATGGGAACTGTGGTC 837
consensus_7836#2 TGTTGCAAGGT-----------------------------TAAGCATGGGAACTGTGGTC 88
consensus_7836#1 TTCTGCAAATTGGCCAT----------------------CTAAGGATGTTATTTCTGCTG 230
* ***** * **** *** * * ** *
consensus_7836#0 CTGTTGAGCCATTGAAGGTACAGAGACAACTGGTTGCTCGCACACCAGTTTTCTATCGAT 897
consensus_7836#2 CTGTTGAGCCATTGAAGGTACAGAGACAACTGGTTGCTCGCACACCAGTTTTCTATCGAT 148
consensus_7836#1 ATTCTGTATGA--AACTATTTTGATGTTACAAAATTTTCCGATATTATTTGTTGATATTC 288
* ** * * * ** ** * ** * * * ** * **
consensus_7836#0 TGGAGAAAAGAGAAAATGAGGATTCAGCTATAGGATATATTCACATTAAAGAATTCAATG 957
consensus_7836#2 TGGAGAAAAGAGAAAATGAGGATTCAGCTATAGGATATATTCACATTAAAGAATTCAATG 208
consensus_7836#1 CATTAAAATTATTATCGGTAGATATAACTT---AATATAATTACATTGGATGGTGGCATG 345
*** * * * *** * ** ***** * ***** * * ***
consensus_7836#0 CAGTGGCCA--AAAAAGATTTGGTTAGTGCA---CTAAAGCGTCTACAGAACTCAGGTGC 1012
consensus_7836#2 CAGTGGCCA--AAAAAGATTTGGTTAGTGCA---CTAAAGCGTCTACAGAACTCAGGTGC 263
consensus_7836#1 TTATATCCACTAACATATGTTCTCTTGTGCAGCACTAAAGCGTCTACAGAACTCAGGTGC 405
* *** ** * ** * ***** **************************
consensus_7836#0 CTCCTATTTTGTTTTGGATTTGAGGGACAATCTTGGTGGACTAGTCCCAGCTGGG----- 1067
consensus_7836#2 CTCCTATTTTGTTT-GGATTTGAGGGACAATCTTGGTGGACTAGTCCAAGTATGCTTTTT 322
consensus_7836#1 CTCCTATTTTGTTTTGGATTTGAGGGACAATCTTGGTGGACTAGTCCAAGTATGCTTTTT 465
************** ******************************** ** *
consensus_7836#0 --ATAGAGACTGCAAAGCTCT-----TCCTGAAGTAAGGAGACACGGTGATTTATACTGC 1120
consensus_7836#2 TCATTTCAATTATATAACCATGTCAGTCTTTGGTCTGCTAAACAAAATTGTGTTTGTGGG 382
consensus_7836#1 TCATTTCAATTATATAACCATGTCAGTCTTTGGTCTGCTAAACAAAATTGTGTTTGTGGG 525
** * * * * * * ** * * *** * * * * *
consensus_7836#0 TGG--------------------------------------------------------- 1123
consensus_7836#2 TGCCATTCTTTTCCTTTGAAGTTCTTGAGTTGTAAGCTTCTTGAAACAGTTGAGGCTTAT 442
consensus_7836#1 TGCCATTCTTTTCCTTTGAAGTTCTTGAGTTGTAAGCTTCTTGAAACAGTTGAGGCTTAT 585
**
consensus_7836#0 ------------------------------------------------------------
consensus_7836#2 GCATTTGGATAATGAAAGACACTGATATAATTTATTTGGATGGNGTTATTCTTACTCATG 502
consensus_7836#1 GCATTTGGATAATGAAAGACACTG------------------------------------ 609
consensus_7836#0 -----------------------------------------------
consensus_7836#2 GTACTTTTGTTTACTTTAAAGGCTGGGATAGAGACTGCAAAGCTCTT 549
consensus_7836#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||