These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7836#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1123 fasta sequence [ACCACTAATCCGAAGCGGCTCCCACGCCCGCCGCCCCGCCGCCACGCCGCCATGCGGCTACTCCCCTACGCGCCGTCGCCGCGGCCGCCGCAGCGCTCGCTCGCCACCCGCAGGACCAAGCCAGGGCCGCCGTGCGCGCTCCCCTTCCCCGACGCCCTCCGCGCCGCTGCCGCGGCCACGGCGGCCGCCATGTCCATCTCCCTCTCCCTCCTCACCGGCGACGCCGTGGGGGCGGAGCGGCCGCGGGGCCCCGAGCTCTGCCGCGACGGGGCCGCCGCCGAGACCAAGGAGGAGGTGAGGAGGAGCGAAGTGGTGACGAACGAGCAGCTCGTGGAGGAGGCGTGGGAGGTGGTCAACGAGGGGTTCCTCCCGGACGCCGGAAGCCGTCCCTGGTCGCCGGAGATGTGGATGAAAAAGAAGCAAGATATTGTCCAAACCTCAATCAGATCCCGTTCCAGAGCCCATGATATCATTCAGAAAATGCTGGCTAACCTGGGTGACCCATACACAAGGTTCCTGACTCCCTCCGAATTCTGATGATATTTTGCATGTGTTAAATCAATCTGGTGAAGTTCTCCAAGATGTCAAAATATGACATGACGGGAATAGGATTAAACTTGAGAGAAATTCCTGACGGCAATGGCTCTTCCAAGTTGATGGTATTAGGGCTCATATTAGATGGGCCTGCCCACTCTGCTGGTGTTAGACAGGGTGACGAACTTTTGTCAGTCAATGGCATTGATGTTATGGGTAAATCTGCATTTGATGTGTCATCCATGTTGCAAGGTCCAAAAGATA-CTTTTGTTACAATTAAGGTTAAGCATGGGAA-CTGTGGTCCTGTTGAGCCATTGAAGGTACAGAGACAACTGGTTGCTCGCACACCAGTTTTCTATCGATTGGAGAAAAGAGAAAATGAGGATTCAGCTATAGGATATATTCACATTAAAGAATTCAATGCAGTGGCCAAAAAAGATTTGGTTAGTGCACTAAAGCGTCTACAGAACTCAGGTGCCTCCTATTTTGTTTTGGATTTGAGGGACAATCTTGGTGGACTAGTCCCAGCTGGGATAGAGACTGCAAAGCTCTTCCTGAAGTAAGGAGACACGGTGATTTATACTGCTGG] [+] EMBL CB636185 [ACCACTAATCCGAAGCGGCTCCCACGCCCGCCGCCCCGCCGCCACGCCGCCATGCGGCTACTCCCCTACGCGCCGTCGCCGCGGCCGCCGCAGCGCTCGCTCGCCACCCGCAGGACCAAGCCAGGGCCGCCGTGCGCGCTCCCCTTCCCCGACGCCCTCCGCGCCGCTGCCGCGGCCACGGCGGCCGCCATGTCCATCTCCCTCTCCCTCCTCACCGGCGACGCCGTGGGGGCGGAGCGGCCGCGGGGCCCCGAGCTCTGCCGCGACGGGGCCGCCGCCGAGACCAAGGAGGAGGTGAGGAGGAGCGAAGTGGTGACGAACGAGCAGCTCGTGGAGGAGGCGTGGGAGGTGGTCAACGAGGGGTTCCTCCCGGACGCCGGAAGCCGTCCCTGGTCGCCGGAGATGTG ] [+] EMBL CB642880 [ TGGTGACTAACGAGCAGCTCGTGGAGGAGGCGTGGGAGGTGGTCAACGAGGGGTTCCTCCCGGACGCCGGAAGCCGTCCCTGGTCGCCGGAGATGTGGATGAAAAAGAAGCAAGATATTGTCCAAACCTCAATCAGATCCCGTTCCAGAGCCCATGATATCATTCAGAAAATGCTGGCTAACCTGGGTGACCCATACACAAGGTTCCTGACTCCCTCCGAATTCTGATGATATTTTGCATGTGTTAAATCAATCTGGTGAAGTTCTCCAAGATGTCAAAATATGACATGACGGGAATAGGATTAAACTTGAGAGAAATTCCTGACGGCAATGGCTCTTCCAAGTTGATGGTATTAGGGCTCATATTAGATGGGCCTGCCCACTCTGCTGGTGTTAGACAGGGTGACGAACTTTTGTCAGTCAATGGCATTGATGTTATGGGTAAATCTGCATTTGATGTGTCATCCATGTTGCAAGGTCCAAAAGATA CTTTTGTTACAATTAAGGTTAAGCATGGGAA CTGTGGTCCTGTTGAGCCATTGAAGGTACAGAGACAACTGGTTGCTCGCACACCAGTTTTCTATCGATTGGAGAAAAGAGAAAATGAGGATTCAGCTATAGGATATATTCACATTAAAGAATTCAATGCAGTGGCCAAAAAAGATTTGGTTAGTGCACTAAAGCGTCTACAGAACTCAGGTGCCTCCTATTTTGTTTTGGATTTGAGGGACAATCTTGGTGGACTAGTCCCAGCTGGGATAGAGACTGCAAAGCTCTTCCTGAAGTAAGGAGACACGGTGATTTATACTGCTGG] [+] EMBL CF323200 [ AGCTCGTGGAGGAGGCGTGGGAGGTGGTCAACGAGGGGTTCCTCCCGGACGCCGGAAGCCGTCCCTGGTCGCCGGAGATGTGGATGAAAAAGAAGCAAGATATTGTCCAAACCTCAATCAGATCCCGTTCCAGAGCCCATGATATCATTCAGAAAATGCTGGCTAACCTGGGTGACCCATACACAAGGTTCCTGACTCCCTCCGAATTCTGATGATATTTTGCATGTGTTAAATCAATCTGGTGAAGTTCTCCAAGATGTCAAAATATGACATGACGGGAATAGGATTAAACTTGAGAGAAATTCCTGACGGCAATGGCTCTTCCAAGTTGATGGTATTAGGGCTCATATTAGATGGGCCTGCCCACTCTGCTGGTGTTAGACAGGGTGACGAACTTTTGTCAGTCAATGGCATTGATGTTATGGGTAAATCTGCATTTGATGTGTCATCCATGTTGCAAGGTCCAAAAGATACCTTTTGTTACAATTAAGGTTAAGCATGGGAACCTGTGGTCCTGTTGAGCCATTGAAGGTACAGAGACAACTGGTTGCTCGCACACCAGTTTTCTATCGAT ] consensusID : consensus_7836#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [TTCTATGCATAGAACTTATTGCAAATGGCCATGTAGTATCTAATTCTTAAGCCAAAACTGCTATGCATGTACATATAACTATTTTCCTGGCTCAAACTGTGAGCATCAGGAGAACAACTTAAAATATTGTTTCCCCTTCTGCAAATTGGCCATCTAACGATGCTATTTCAGAACTTAAAATATCGTTTTCCCTTCTGCAAATTGGCCATCTAAGGATGTTATTTCTGCTGATTCTGTATGAAACTATTTTGATGTTACAAAATTTTCCGATATTATTTGTTGATATTCCATTAAAATTATTATCGGTAGATATAACTTAATATAATTACATTGGATGGTGGCATGTTATATCCACTAACATATGTTCTCTTGTGCAGCACTAAAGCGTCTACAGAACTCAGGTGCCTCCTATTTTGTTTTGGATTTGAGGGACAATCTTGGTGGACTAGTCCAAGTATGCTTTTTTCATTTCAATTATATAACCATGTCAGTCTTTGGTCTGCTAAACAAAATTGTGTTTGTGGGTGCCATTCTTTTCCTTTGAAGTTCTTGAGTTGTAAGCTTCTTGAAACAGTTGAGGCTTATGCATTTGGATAATGAAAGACACTG] [+] EMBL CF325751 [TTCTATGCATAGAACTTATTGCAAATGGCCATGTAGTATCTAATTCTTAAGCCAAAACTGCTATGCATGTACATATAACTATTTTCCTGGCTCAAACTGTGAGCATCAGGAGAACAACTTAAAATATTGTTTCCCCTTCTGCAAATTGGCCATCTAACGATGCTATTTCAGAACTTAAAATATCGTTTTCCCTTCTGCAAATTGGCCATCTAAGGATGTTATTTCTGCTGATTCTGTATGAAACTATTTTGATGTTACAAAATTTTCCGATATTATTTGTTGATATTCCATTAAAATTATTATCGGTAGATATAACTTAATATAATTACATTGGATGGTGGCATGTTATATCCACTAACATATGTTCTCTTGTGCAGCACTAAAGCGTCTACAGAACTCAGGTGCCTCCTATTTTGTTTTGGATTTGAGGGACAATCTTGGTGGACTAGTCCAAGTATGCTTTTTTCATTTCAATTATATAACCATGTCAGTCTTTGGTCTGCTAAACAAAATTGTGTTTGTGGGTGCCATTCTTTTCCTTTGAAGTTCTTGAGTTGTAAGCTTCTTGAAACAGTTGAGGCTTATGCATTTGGATAATGAAAGACACTG] consensusID : consensus_7836#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [TTTTGTCAGTCAATGGCATTGATGTTATGGGTAAATCTGCATTTGATGTGTCATCCATGTTGCAAGGTTAAGCATGGGAACTGTGGTCCTGTTGAGCCATTGAAGGTACAGAGACAACTGGTTGCTCGCACACCAGTTTTCTATCGATTGGAGAAAAGAGAAAATGAGGATTCAGCTATAGGATATATTCACATTAAAGAATTCAATGCAGTGGCCAAAAAAGATTTGGTTAGTGCACTAAAGCGTCTACAGAACTCAGGTGCCTCCTATTTTGTTTGGATTTGAGGGACAATCTTGGTGGACTAGTCCAAGTATGCTTTTTTCATTTCAATTATATAACCATGTCAGTCTTTGGTCTGCTAAACAAAATTGTGTTTGTGGGTGCCATTCTTTTCCTTTGAAGTTCTTGAGTTGTAAGCTTCTTGAAACAGTTGAGGCTTATGCATTTGGATAATGAAAGACACTGATATAATTTATTTGGATGGNGTTATTCTTACTCATGGTACTTTTGTTTACTTTAAAGGCTGGGATAGAGACTGCAAAGCTCTT] [+] EMBL CF323529 [TTTTGTCAGTCAATGGCATTGATGTTATGGGTAAATCTGCATTTGATGTGTCATCCATGTTGCAAGGTTAAGCATGGGAACTGTGGTCCTGTTGAGCCATTGAAGGTACAGAGACAACTGGTTGCTCGCACACCAGTTTTCTATCGATTGGAGAAAAGAGAAAATGAGGATTCAGCTATAGGATATATTCACATTAAAGAATTCAATGCAGTGGCCAAAAAAGATTTGGTTAGTGCACTAAAGCGTCTACAGAACTCAGGTGCCTCCTATTTTGTTTGGATTTGAGGGACAATCTTGGTGGACTAGTCCAAGTATGCTTTTTTCATTTCAATTATATAACCATGTCAGTCTTTGGTCTGCTAAACAAAATTGTGTTTGTGGGTGCCATTCTTTTCCTTTGAAGTTCTTGAGTTGTAAGCTTCTTGAAACAGTTGAGGCTTATGCATTTGGATAATGAAAGACACTGATATAATTTATTTGGATGGNGTTATTCTTACTCATGGTACTTTTGTTTACTTTAAAGGCTGGGATAGAGACTGCAAAGCTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7836#0 ACCACTAATCCGAAGCGGCTCCCACGCCCGCCGCCCCGCCGCCACGCCGCCATGCGGCTA 60 consensus_7836#2 ------------------------------------------------------------ consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 CTCCCCTACGCGCCGTCGCCGCGGCCGCCGCAGCGCTCGCTCGCCACCCGCAGGACCAAG 120 consensus_7836#2 ------------------------------------------------------------ consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 CCAGGGCCGCCGTGCGCGCTCCCCTTCCCCGACGCCCTCCGCGCCGCTGCCGCGGCCACG 180 consensus_7836#2 ------------------------------------------------------------ consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 GCGGCCGCCATGTCCATCTCCCTCTCCCTCCTCACCGGCGACGCCGTGGGGGCGGAGCGG 240 consensus_7836#2 ------------------------------------------------------------ consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 CCGCGGGGCCCCGAGCTCTGCCGCGACGGGGCCGCCGCCGAGACCAAGGAGGAGGTGAGG 300 consensus_7836#2 ------------------------------------------------------------ consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 AGGAGCGAAGTGGTGACGAACGAGCAGCTCGTGGAGGAGGCGTGGGAGGTGGTCAACGAG 360 consensus_7836#2 ------------------------------------------------------------ consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 GGGTTCCTCCCGGACGCCGGAAGCCGTCCCTGGTCGCCGGAGATGTGGATGAAAAAGAAG 420 consensus_7836#2 ------------------------------------------------------------ consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 CAAGATATTGTCCAAACCTCAATCAGATCCCGTTCCAGAGCCCATGATATCATTCAGAAA 480 consensus_7836#2 ------------------------------------------------------------ consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 ATGCTGGCTAACCTGGGTGACCCATACACAAGGTTCCTGACTCCCTCCGAATTCTGATGA 540 consensus_7836#2 ------------------------------------------------------------ consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 TATTTTGCATGTGTTAAATCAATCTGGTGAAGTTCTCCAAGATGTCAAAATATGACATGA 600 consensus_7836#2 ------------------------------------------------------------ consensus_7836#1 -----------------------------------------TTCTATGCATAGAACTTAT 19 consensus_7836#0 CGGGAATAGGATTAAACTTGAGAGAAATTCCTGACGGCAATGGCTCTTCCAAGTTGATGG 660 consensus_7836#2 ------------------------------------------------------------ consensus_7836#1 TGCAAATGGCCATGTAGT---ATCTAATTCTTAAGCCAAAACTGCTATGCATGTACATAT 76 consensus_7836#0 TATTAGGGCTCATATTAGATGGGCCTGCCCACTCTGCTGGTGTTAGACAGGGTGACGAAC 720 consensus_7836#2 ------------------------------------------------------------ consensus_7836#1 AACTA----TTTTCCTGGCTCAAACTGTGAGCATCAGGAGAACAACTTAAAATATTGTTT 132 consensus_7836#0 TTTTGTCAGTCAATGGCATTGATGTTATGGGTAAATCTGCATTTGATGTGTCAT---CCA 777 consensus_7836#2 TTTTGTCAGTCAATGGCATTGATGTTATGGGTAAATCTGCATTTGATGTGTCAT---CCA 57 consensus_7836#1 CCCCTTCTGCAAATTGGCCATCTAACGATGCTATTTCAGAACTTAAAATATCGTTTTCCC 192 ** * *** * * * ** ** * * ** * * ** * ** consensus_7836#0 TGTTGCAAGGTCCAAAAGATACTTTTGTTACAATTAAGGTTAAGCATGGGAACTGTGGTC 837 consensus_7836#2 TGTTGCAAGGT-----------------------------TAAGCATGGGAACTGTGGTC 88 consensus_7836#1 TTCTGCAAATTGGCCAT----------------------CTAAGGATGTTATTTCTGCTG 230 * ***** * **** *** * * ** * consensus_7836#0 CTGTTGAGCCATTGAAGGTACAGAGACAACTGGTTGCTCGCACACCAGTTTTCTATCGAT 897 consensus_7836#2 CTGTTGAGCCATTGAAGGTACAGAGACAACTGGTTGCTCGCACACCAGTTTTCTATCGAT 148 consensus_7836#1 ATTCTGTATGA--AACTATTTTGATGTTACAAAATTTTCCGATATTATTTGTTGATATTC 288 * ** * * * ** ** * ** * * * ** * ** consensus_7836#0 TGGAGAAAAGAGAAAATGAGGATTCAGCTATAGGATATATTCACATTAAAGAATTCAATG 957 consensus_7836#2 TGGAGAAAAGAGAAAATGAGGATTCAGCTATAGGATATATTCACATTAAAGAATTCAATG 208 consensus_7836#1 CATTAAAATTATTATCGGTAGATATAACTT---AATATAATTACATTGGATGGTGGCATG 345 *** * * * *** * ** ***** * ***** * * *** consensus_7836#0 CAGTGGCCA--AAAAAGATTTGGTTAGTGCA---CTAAAGCGTCTACAGAACTCAGGTGC 1012 consensus_7836#2 CAGTGGCCA--AAAAAGATTTGGTTAGTGCA---CTAAAGCGTCTACAGAACTCAGGTGC 263 consensus_7836#1 TTATATCCACTAACATATGTTCTCTTGTGCAGCACTAAAGCGTCTACAGAACTCAGGTGC 405 * *** ** * ** * ***** ************************** consensus_7836#0 CTCCTATTTTGTTTTGGATTTGAGGGACAATCTTGGTGGACTAGTCCCAGCTGGG----- 1067 consensus_7836#2 CTCCTATTTTGTTT-GGATTTGAGGGACAATCTTGGTGGACTAGTCCAAGTATGCTTTTT 322 consensus_7836#1 CTCCTATTTTGTTTTGGATTTGAGGGACAATCTTGGTGGACTAGTCCAAGTATGCTTTTT 465 ************** ******************************** ** * consensus_7836#0 --ATAGAGACTGCAAAGCTCT-----TCCTGAAGTAAGGAGACACGGTGATTTATACTGC 1120 consensus_7836#2 TCATTTCAATTATATAACCATGTCAGTCTTTGGTCTGCTAAACAAAATTGTGTTTGTGGG 382 consensus_7836#1 TCATTTCAATTATATAACCATGTCAGTCTTTGGTCTGCTAAACAAAATTGTGTTTGTGGG 525 ** * * * * * * ** * * *** * * * * * consensus_7836#0 TGG--------------------------------------------------------- 1123 consensus_7836#2 TGCCATTCTTTTCCTTTGAAGTTCTTGAGTTGTAAGCTTCTTGAAACAGTTGAGGCTTAT 442 consensus_7836#1 TGCCATTCTTTTCCTTTGAAGTTCTTGAGTTGTAAGCTTCTTGAAACAGTTGAGGCTTAT 585 ** consensus_7836#0 ------------------------------------------------------------ consensus_7836#2 GCATTTGGATAATGAAAGACACTGATATAATTTATTTGGATGGNGTTATTCTTACTCATG 502 consensus_7836#1 GCATTTGGATAATGAAAGACACTG------------------------------------ 609 consensus_7836#0 ----------------------------------------------- consensus_7836#2 GTACTTTTGTTTACTTTAAAGGCTGGGATAGAGACTGCAAAGCTCTT 549 consensus_7836#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||