Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 784 cluster # 784       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_784#0 length = 1157 sequences # 2  

consensusID : consensus_784#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1157
fasta sequence
                              [GCAAATGCTGCATGCCGGGCGTCTCTTCTTCTCTGTGTATCCCTTGTTCTTTTGATATTTTGAATCCGTTTGTACAGGGATGTATTTTCGGGTTCTTGGAGCAGCCAAAGCAGATGGCTTCTTCCGGCTACGGCGGAGAGAGGCTACAGCCTGATCGACGAGGCCGGCCAACTTTTTTTTTCCAGTGAATTGCATGCATGTAAGTAGCAAACAACAGCTGACGCTGGGTTCCTGAATCCTATGGCTTGGCAGAACACGGCTCCGGCACCAATGCCCGGCATGCAAGGGTGGCAGGCGGTGGCGTTCCGCATCTCCGGCGACAAGGCCTTCTTCTTCGGCTGCGGGTTCTACGGCGCCCAGGACACGCTCTGCGACGACGCCGGCCGGCACTACTTCCGCGACTGCTACATCGAGGGCTCCATCGACTTCGTCTTCGGCAACGGCCGCTCCCTCTACAAGGACTGCGAGCTGCACTCGACGGCGCAGCGGTTCGGCTCGGTGGCGGCGCAGGGGCGGCACGACCCGTGCGAGCGCACCGGCTTCGCCTTCGTCAACTGCCGGGTCACCGGCACTGGCCGCCTCTACGTCGGCCGTGCCATGGGCCAGTACTCGCGGATCGTCTACGCCTACACCTACTTCGACAGCGTCATCGCCCCCGGCGGCTGGGACGACTGGGACCACGCCAGCAACAAGAGCATGACGGCGTTCTTCGGGATGTACAGGAACTGGGGGCCCGGCGCCGACGCGGTGCACGGCGTGC-CGTGGGCGCGGGAGCTCGACTACTTCGCCGCGCGCCCCTTCCTCGGCAAGAGCTTCGTCAACGGATTCCACTGGCTTACACCTGACGTCTGAAAGCCGTTTTTCGGCACCACAATTAATTTACTGGAGACAAGAACGTACATTTGTTAGTACAGCAAAAGCGAAGAATAGAACATTACGATAAATATAAAGTATTGAAGTGACTAGTGCAGTATATAGCGGTAGATTCATTCGTTCATTCGTTTTGTCTGATCCGGCTTATAATGATAGCTGCTATAGAATTCAAGCACAGCTCTTTACAAGATCTATAGTAGCTATGTAGTACTGTTTTAAAAGCTTTGTCATGTAGACATGTACCCATGCATGTGAGGTGAATAGTGAATATATAATTGATTTTG]

[+] EMBL AK067182             [GCAAATGCTGCATGCCGGGCGTCTCTTCTTCTCTGTGTATCCCTTGTTCTTTTGATATTTTGAATCCGTTTGTACAGGGATGTATTTTCGGGTTCTTGGAGCAGCCAAAGCAGATGGCTTCTTCCGGCTACGGCGGAGAGAGGCTACAGCCTGATCGACGAGGCCGGCCAACTTTTTTTTTCCAGTGAATTGCATGCATGTAAGTAGCAAACAACAGCTGACGCTGGGTTCCTGAATCCTATGGCTTGGCAGAACACGGCTCCGGCACCAATGCCCGGCATGCAAGGGTGGCAGGCGGTGGCGTTCCGCATCTCCGGCGACAAGGCCTTCTTCTTCGGCTGCGGGTTCTACGGCGCCCAGGACACGCTCTGCGACGACGCCGGCCGGCACTACTTCCGCGACTGCTACATCGAGGGCTCCATCGACTTCGTCTTCGGCAACGGCCGCTCCCTCTACAAGGACTGCGAGCTGCACTCGACGGCGCAGCGGTTCGGCTCGGTGGCGGCGCAGGGGCGGCACGACCCGTGCGAGCGCACCGGCTTCGCCTTCGTCAACTGCCGGGTCACCGGCACTGGCCGCCTCTACGTCGGCCGTGCCATGGGCCAGTACTCGCGGATCGTCTACGCCTACACCTACTTCGACAGCGTCATCGCCCCCGGCGGCTGGGACGACTGGGACCACGCCAGCAACAAGAGCATGACGGCGTTCTTCGGGATGTACAGGAACTGGGGGCCCGGCGCCGACGCGGTGCACGGCGTGC CGTGGGCGCGGGAGCTCGACTACTTCGCCGCGCGCCCCTTCCTCGGCAAGAGCTTCGTCAACGGATTCCACTGGCTTACACCTGACGTCTGAAAGCCGTTTTTCGGCACCACAATTAATTTACTGGAGACAAGAACGTACATTTGTTAGTACAGCAAAAGCGAAGAATAGAACATTACGATAAATATAAAGTATTGAAGTGACTAGTGCAGTATATAGCGGTAGATTCATTCGTTCATTCGTTTTGTCTGATCCGGCTTATAATGATAGCTGCTATAGAATTCAAGCACAGCTCTTTACAAGATCTATAGTAGCTATGTAGTACTGTTTTAAAAGCTTTGTCATGTAGACATGTACCCATGCATGTGAGGTGAATAGTGAATATATAATTGATTTTG]
[+] EMBL CF325818             [                                                                                                                                                                                                                                                                                                                                                                                           CCGGCCGGCACTACTTCCGCGACTGCTACATCGAGGGCTCCATCGACTTCGTCTTCGGCAACGGCCGCTCCCTCTACAAGGACTGCGAGCTGCACTCGACGGCGCAGCGGTTCGGCTCGGTGGCGGCGCAGGGGCGGCACGACCCGTGCGAGCGCACCGGCTTCGCCTTCGTCAACTGCCGGGTCACCGGCACTGGCCGCCTCTACGTCGGCCGTGCCATGGGCCAGTACTCGCGGATCGTCTACGCCTACACCTACTTCGACAGCGTCATCGCCCCCGGCGGCTGGGACGACTGGGACCACGCCAGCAACAAGAGCATGACGGCGTTCTTCGGGATGTACAGGAACTGGGGGCCCGGCGCCGACGCGGTGCACGGCGTGCNCGTGGGCGCGGGAGCTCGACTACTTCGCCGCGCGCCCCTTCCTCGGCAAGAGCTTCGTCAACGGATTCCACTGGCTTACACCTGACGTCTG                                                                                                                                                                                                                                                                                                                  ]


>consensus_784#0 GCAAATGCTGCATGCCGGGCGTCTCTTCTTCTCTGTGTATCCCTTGTTCTTTTGATATTT TGAATCCGTTTGTACAGGGATGTATTTTCGGGTTCTTGGAGCAGCCAAAGCAGATGGCTT CTTCCGGCTACGGCGGAGAGAGGCTACAGCCTGATCGACGAGGCCGGCCAACTTTTTTTT TCCAGTGAATTGCATGCATGTAAGTAGCAAACAACAGCTGACGCTGGGTTCCTGAATCCT ATGGCTTGGCAGAACACGGCTCCGGCACCAATGCCCGGCATGCAAGGGTGGCAGGCGGTG GCGTTCCGCATCTCCGGCGACAAGGCCTTCTTCTTCGGCTGCGGGTTCTACGGCGCCCAG GACACGCTCTGCGACGACGCCGGCCGGCACTACTTCCGCGACTGCTACATCGAGGGCTCC ATCGACTTCGTCTTCGGCAACGGCCGCTCCCTCTACAAGGACTGCGAGCTGCACTCGACG GCGCAGCGGTTCGGCTCGGTGGCGGCGCAGGGGCGGCACGACCCGTGCGAGCGCACCGGC TTCGCCTTCGTCAACTGCCGGGTCACCGGCACTGGCCGCCTCTACGTCGGCCGTGCCATG GGCCAGTACTCGCGGATCGTCTACGCCTACACCTACTTCGACAGCGTCATCGCCCCCGGC GGCTGGGACGACTGGGACCACGCCAGCAACAAGAGCATGACGGCGTTCTTCGGGATGTAC AGGAACTGGGGGCCCGGCGCCGACGCGGTGCACGGCGTGCCGTGGGCGCGGGAGCTCGAC TACTTCGCCGCGCGCCCCTTCCTCGGCAAGAGCTTCGTCAACGGATTCCACTGGCTTACA CCTGACGTCTGAAAGCCGTTTTTCGGCACCACAATTAATTTACTGGAGACAAGAACGTAC ATTTGTTAGTACAGCAAAAGCGAAGAATAGAACATTACGATAAATATAAAGTATTGAAGT GACTAGTGCAGTATATAGCGGTAGATTCATTCGTTCATTCGTTTTGTCTGATCCGGCTTA TAATGATAGCTGCTATAGAATTCAAGCACAGCTCTTTACAAGATCTATAGTAGCTATGTA GTACTGTTTTAAAAGCTTTGTCATGTAGACATGTACCCATGCATGTGAGGTGAATAGTGA ATATATAATTGATTTTG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)