|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7841#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 764 fasta sequence
[CCTTTTATTTTTTTTTGAAGCTCAAACATGCATGTAAAATTCGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGTTCCAGCACTATGCACCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGGAGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGTGAATAACAGGATTCTTGTGTTTGTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGATTTATTGCTTCCTCTGTCCTTTAAATATTGCAGCTTTACCAATCACGTGCCTCTTCCCCTTCCTCTACTTCATGGTAAGTATGTATTCACTTCTCCATCTAATTATTTCATCATGCGTCTTGAGCTACAGTATCACCTGCGTCGCACAAAGACGTTTACCTAACTTGAAGGACACTGCTTTGCATCATTCCTAATTAATCTCTGAACCCTGGATCATTTCGAATGCATGTCCCAGTTCACACATTTCTCCCTAACCATTATACCTTACCACTTGGTTGCAACTTGGATCTCATGAGATATTCCAACTGTAGCCTTCACCGTTTTGCTTTGTATAGCTGGACTCATTGGTCCTTTGTCTAAAAGAAAAACTCATAGCCTTCCTTGAATTTCTGACACGATTTCAGTTTGTACGTCAAACCATCATCTTCAGATCTATGTAGCATATATAACGGGAGTGCCTGCCCCGTAGTTCTCTTTATCAAGATCTCTACTGGTTCATTCN]
[+] EMBL CB656324 [CCTTTTATTTTTTTTTGAAGCTCAAACATGCATGTAAAATTCGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGTTCCAGCACTATGCACCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGGAGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGTGAATAACAGGATTCTTGTGTTTGTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGATTTATTGCTTCCTCTGTCCTTTAAATATTGCAGCTTTACCAATCACGTGCCTCTTCCCCTTCCTCTACTTCATGGTAAGTATGTATTCACTTCTCCATCTAATTATTTCATCATGCGTCTTGAGCTACAGTATCACCTGCGTCGCACAAAGACGTTTACCTAACTTGAAGGACACTGCTTTGCATCATTCCTAATTAATCTCTGAACCCTGGATCATTTCGAATGCATGTCCCAGTTCACACATTTCTCCCTAACCATTATACCTTACCACTTGGTTGCAACTTGGATCTCATGAGATATTCCAACTGTAGCCTTCACCGTTTTGCTTTGTATAGCTGGACTCATTGGTCCTTTGTCTAAAAGAAAAACTCATAGCCTTCCTTGAATTTCTGACACGATTTCAGTTTGTACGTCAAACCATCATCTTCAGATCTATGTAGCATATATAACGGGAGTGCCTGCCCCGTAGTTCTCTTTATCAAGATCTCTACTGGTTCATTCN]
[+] EMBL CB656323 [ ATCACCTGCGGCGCACAAAGACGNTTACCTAACTTGAAGGACACTGCTTTGCATCATTCCTAATTAATCTCTGAACCCTGGATCATTTCGAATGCATGTCCCAGTTCACACATTTCTCCCTAACCATTATACCTTACCACTTGGTTGCAACTTGGATCTCATGAGATATTCCAACTGTAGCCTTCACCGTTTTGCTTTGAATAGCTGGACTCATTGGTCCTTTGTCTAAAAGAAAAACTCATAGCCTTCCTTGAATTTCTGACACGATTTCAGTTTGTACGTCAAACCATCATCTTCAGATCTATG ]
consensusID : consensus_7841#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 542 fasta sequence
[TCNTNTCNTTTCTTNTTTTTTCTTTTTCCTTTTTCTTTTTTTTTTTTTTTTTATATAATGGCATGATCCAATTAACCCTATATATATAGGAGTACTTGTGGAGCCGCTTGAATTGAAGCTCAAACATGCATGTAAAATTTGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGTTCCAGCACTATGCGCCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGGAGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGTGAATAACAGGATTCTTGTG-TTGTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGATTTATTGCTTCCTCTGTCCTTTAAATA-TGCAGCTTTACCAATCACGTGCCTCTTCCCCTTCCTCTACTTCATGGTAAGTATGTATTCACTTCTCCATCTAATTATTTCATCATGCGTCTTGAGCTACAGTATCACCTGGGTCGCACAAAGACGTTTACCTAACTTTGGAAGGACACTGTTTGG]
[-] EMBL AU095234 [TCNTNTCNTTTCTTNTTTTTTCTTTTTCCTTTTTCTTTTTTTTTTTTTTTTTATATAATGGCATGATCCAATTAACCCTATATATATAGGAGTACTTGTGGAGCCGCTTGAATTGAAGCTCAAACATGCATGTAAAATTTGTTCAGGATAGCAAGTAGTATCT ]
[-] EMBL BI807660 [ ttttTAATGGCATGATCCAATTAACCCTATATATATAGGAGTACTTGTGGAGCCGCTTGAATTGAAGCTCAAACATGCATGTAAAATTTGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGTTCCAGCACTATGCGCCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGGAGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGTGAATAACAGGATTCTTGTG TTGTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGATTTATTGCTTCCTCTGTCCTTTAAATA TGCAGCTTTACCAATCACGTGCCTCTTCCCCTTCCTCTACTTCATGGTAAGTATGTATTCACTTCTCCATCTAATTATTTCATCATGCGTCTTGAGCTACAGTATCACCTGGGTCGCACAAAGACGTTTACCTAACTTTGGAAGGACACTGTTTGG]
[-] EMBL CA764835 [ TACTTGTGGAGCCGCTTGAATTGAAGCTCAAACATGCATGTAAAATTTGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGTTCCAGCACTATGCGCCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGGGGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGTGAATAACAGGATTCTTGTGTTTGTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGATTTATTGCTTCCTCTGTCCTTTAAATATTGCAGCTTTACCAATCACG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7841#0 ------------------------------------------------------------
consensus_7841#1 TCNTNTCNTTTCTTNTTTTTTCTTTTTCCTTTTTCTTTTTTTTTTTTTTTTTATATAATG 60
consensus_7841#0 -----------------------------------CCTTTTATTTTTTT---TTGAAGCT 22
consensus_7841#1 GCATGATCCAATTAACCCTATATATATAGGAGTACTTGTGGAGCCGCTTGAATTGAAGCT 120
* * ** ********
consensus_7841#0 CAAACATGCATGTAAAATTCGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGT 82
consensus_7841#1 CAAACATGCATGTAAAATTTGTTCAGGATAGCAAGTAGTATCTGTCTATCTGAGATCTGT 180
******************* ****************************************
consensus_7841#0 TCCAGCACTATGCACCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGG 142
consensus_7841#1 TCCAGCACTATGCGCCTATGCAATTATGTACTATCAGTATACATATCATATTAATATTGG 240
************* **********************************************
consensus_7841#0 AGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGT 202
consensus_7841#1 AGATCAATAGCGTAACTAACCACAAACAGCAGCAGGAGCAAGCACATGCTTTCTTGTCGT 300
************************************************************
consensus_7841#0 GAATAACAGGATTCTTGTGTTTGTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGA 262
consensus_7841#1 GAATAACAGGATTCTTGTGTT-GTTCCCTTCATGCTGCAAGCTGCACATCTCGTTTCTGA 359
********************* **************************************
consensus_7841#0 TTTATTGCTTCCTCTGTCCTTTAAATATTGCAGCTTTACCAATCACGTGCCTCTTCCCCT 322
consensus_7841#1 TTTATTGCTTCCTCTGTCCTTTAAATAT-GCAGCTTTACCAATCACGTGCCTCTTCCCCT 418
**************************** *******************************
consensus_7841#0 TCCTCTACTTCATGGTAAGTATGTATTCACTTCTCCATCTAATTATTTCATCATGCGTCT 382
consensus_7841#1 TCCTCTACTTCATGGTAAGTATGTATTCACTTCTCCATCTAATTATTTCATCATGCGTCT 478
************************************************************
consensus_7841#0 TGAGCTACAGTATCACCTGCGTCGCACAAAGACGTTTACCTAACTT--GAAGGACACTGC 440
consensus_7841#1 TGAGCTACAGTATCACCTGGGTCGCACAAAGACGTTTACCTAACTTTGGAAGGACACTGT 538
******************* ************************** ***********
consensus_7841#0 TTTGCATCATTCCTAATTAATCTCTGAACCCTGGATCATTTCGAATGCATGTCCCAGTTC 500
consensus_7841#1 TTGG-------------------------------------------------------- 542
** *
consensus_7841#0 ACACATTTCTCCCTAACCATTATACCTTACCACTTGGTTGCAACTTGGATCTCATGAGAT 560
consensus_7841#1 ------------------------------------------------------------
consensus_7841#0 ATTCCAACTGTAGCCTTCACCGTTTTGCTTTGTATAGCTGGACTCATTGGTCCTTTGTCT 620
consensus_7841#1 ------------------------------------------------------------
consensus_7841#0 AAAAGAAAAACTCATAGCCTTCCTTGAATTTCTGACACGATTTCAGTTTGTACGTCAAAC 680
consensus_7841#1 ------------------------------------------------------------
consensus_7841#0 CATCATCTTCAGATCTATGTAGCATATATAACGGGAGTGCCTGCCCCGTAGTTCTCTTTA 740
consensus_7841#1 ------------------------------------------------------------
consensus_7841#0 TCAAGATCTCTACTGGTTCATTCN 764
consensus_7841#1 ------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||