These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7843#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1247 fasta sequence [CCCCGCCGACGCGCACTCGATCCCCCCCGCCTCCGCCTCCGCCTCCGCCTCCGCGTCGCCCATCTCGAGATCCCCCGCATGGCGACGCTCACCGTCCCCTCCGCCGTCCCGCCCGTCGCCGACGACTGCGACCAGCTCCGCAAGGCCTTCCAAGGGTGGGGCACGAACGAGGCGCTCATCATCTCCATCCTGGCCCACCGCGACGCGGCGCAGCGGCGCGC-CATCCGCCGCGCCTACGCCGACACCTACGGCGAGGAGCTCCTCCGCAGCATCACCGACGAGATCTCCGGCGACTTCGAGAGGGCCGTGATCCTGTGGACGCTGGACCCGGCGGAGCGCGACGCGGTGCTCGCCAACGAGGTCGCGAGGAAGTGGTACCCAGGGAGCGGGAGCCGCGTGC-TGGTCGAGATCGCGTGCGCGCGCGGCCCCGCGCAGCTG-TTCGCGGTCAGGCAGGCCTACCACGAGCGCTTCAAGCGCTCGCTCGAGGAGGACGTCGCGGCGCACGCCACTGGTGACTTCCGCAAGCTCTTGGTGCCACTTATAAGTGCTTACCGCTATGAGGGGCCGGAAGTCAACACAAAGTTGGCACATTCAGAAGCCAAAATTCTGCATGAGAAGATCCAGCATAAGGCATATGGTGATGATGAGATCATCAGAATTCTCACTACTAGGAGCAAGGCTCAGTTGATTGCGACATTCAATCGTTACAATGATGAATATGGTCACCCAATCAACAAGGATCTCAAGGCTGATCCCAAGGACGAGTTCCTTTCCACGCTGCGTGCAATCATCCGCTGCTTCTGTTGCCCTGACAGGTACTTCGAGAAAGTCATCAGGTTGGCCATCGCAGGCATGGGAACAGACGAGAACTCCCTCACTAGGATCATTACCACTCGTGCCGAGGTGGATCTGAAGCTGATCACGGAGGCGTACCAGAAGAGGAACAGTGTCCCGCTGGAGCGTGCGGTCGCAGGGGACACCTCCGGGGACTACGAGAGGATGCTTCTTGCTCTTCTGGGTCAGGAGCAGTGAGCCATGCCTATCTTGCCCAGTCACACACTTCATGTGATCATGTCATATCAGAGAATAAACCTGTTATGCAGGGGACACAGCCGTGGTGATTATGATGTTGTTTTTCCAGTGTACGGTACTGTTTGCTGCAGCTTGCATAACAGTGACGATGAAATAAATCATAGTGGAATGCGTTGGCTCATGGGACCTCACTTATTTTGCAACTTTTTGACAGG] [+] EMBL CA757263 [CCCCGCCGACGCGCACTCGATCCCCCCCGCCTCCGCCTCCGCCTCCGCCTCCGCGTCGCCCATCTCGAGATCCCCCGCATGGCGACGCTCACCGTCCCCTCCGCCGTCCCGCCCGTCGCCGACGACTGCGACCAGCTCCGCAAGGCCTTCCAAGGGTGGGGCACGAACGAGGCGCTCATCATCTCCATCCTGGCCCACCGCGACGCGGCGCAGCGGCGCGC CATCCGCCGCGCCTA ] [+] EMBL AK072559 [ TCTCGAGATCCCCCGCATGGCGACGCTCACCGTCCCCTCCGCCGTCCCGCCCGTCGCCGACGACTGCGACCAGCTCCGCAAGGCCTTCCAAGGGTGGGGCACGAACGAGGCGCTCATCATCTCCATCCTGGCCCACCGCGACGCGGCGCAGCGGCGCGC CATCCGCCGCGCCTACGCCGACACCTACGGCGAGGAGCTCCTCCGCAGCATCACCGACGAGATCTCCGGCGACTTCGAGAGGGCCGTGATCCTGTGGACGCTGGACCCGGCGGAGCGCGACGCGGTGCTCGCCAACGAGGTCGCGAGGAAGTGGTACCCAGGGAGCGGGAGCCGCGTGC TGGTCGAGATCGCGTGCGCGCGCGGCCCCGCGCAGCTG TTCGCGGTCAGGCAGGCCTACCACGAGCGCTTCAAGCGCTCGCTCGAGGAGGACGTCGCGGCGCACGCCACTGGTGACTTCCGCAAGCTCTTGGTGCCACTTATAAGTGCTTACCGCTATGAGGGGCCGGAAGTCAACACAAAGTTGGCACATTCAGAAGCCAAAATTCTGCATGAGAAGATCCAGCATAAGGCATATGGTGATGATGAGATCATCAGAATTCTCACTACTAGGAGCAAGGCTCAGTTGATTGCGACATTCAATCGTTACAATGATGAATATGGTCACCCAATCAACAAGGATCTCAAGGCTGATCCCAAGGACGAGTTCCTTTCCACGCTGCGTGCAATCATCCGCTGCTTCTGTTGCCCTGACAGGTACTTCGAGAAAGTCATCAGGTTGGCCATCGCAGGCATGGGAACAGACGAGAACTCCCTCACTAGGATCATTACCACTCGTGCCGAGGTGGATCTGAAGCTGATCACGGAGGCGTACCAGAAGAGGAACAGTGTCCCGCTGGAGCGTGCGGTCGCAGGGGACACCTCCGGGGACTACGAGAGGATGCTTCTTGCTCTTCTGGGTCAGGAGCAGTGAGCCATGCCTATCTTGCCCAGTCACACACTTCATGTGATCATGTCATATCAGAGAATAAACCTGTTATGCAGGGGACACAGCCGTGGTGATTATGATGTTGTTTTTCCAGTGTACGGTACTGTTTGCTGCAGCTTGCATAACAGTGACGATGAAATAAATCATAGTGGAATGCGTTGGCTCATGGGACCTCACTTATTTTGCAACTTTTTGACAGG] [+] EMBL C72574 [ TCTCGAGATCCCCCGCATGGCGACGCTCACCGTCCCCTCCGCCGTCCCGCCCGTCGCCGACGACTGCGACCAGCTCCGCAAGGCCTTCCAAGGGTGGGGCACGAACGAGGCGCTCATCATCTCCATCCTGGCCCACCGCGACG GACGCAG GGCGCGCACATCCGCCGCGCCTACGNCGACAGCTACGGCGAGGAGCTCCTCCGCAGCATCANCGACGAGATCTCCGGCGACTTCGAGAGGGCCGTGATCCTGTGGACGCTGGACCCGGCGGAG GCGACGNGTTGCTCGCCAACGAGGTCGCGAGGAAGTTGTACCCAGGGAGCGGGAGCCGCGTGCTTGGTCGAGATCGCGTTCGNG GCGGCCCCGGNAAGTTGTTTCGCGGTAAGGAAGGCCTA CANGAGCG TTTAAGntttc ] [+] EMBL BI800842 [ gcgtccagCACTCGTGCCGAGGTGGATCTGAAGCTGATCACGGAGGCGTACCAGAAGAGGAACAGTGTCCCGCTGGAGCGTGCGGTCGCAGGGGACACCTCCGGGGACTACGAGAGGATGCTTCTTGCTCTTCTGGGTCAGGAGCAGTGAGCCATGCCTATCTTGCCCAGTCACACACTTCATGTGATCATGTCATATCAGAGAATAAACCTGTTATGCAGGGGAGACACCCGTGGTGATTATGATGTTGTTTTTCCAGTGTACGGTACTGTTTGCTGCAGCTTGCATAACAGTGACGATGAAATAAATCATAGTGGAATGCGTTGGCTCAaaaaaaaaa ] consensusID : consensus_7843#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [ATGTCACCCAAATCAACCAAGGATCTCAAGCTGATCCAAGGACGAGTTCCTTTCCACAGCTGCGTGGCAATCATCCCTGCTTCTGTTGCCCTGACAGGTACTTCGAGAAAGTCATCAGGTTGGCCATCGCAGGCATGGGAACAGACGAGAACTCCCTCACTAGGATCATTACCACTCGTGCCGAGGTGGATCTGAAGCTGATCACGGAGGCGTACCAGAAGAGGAACAGTGTCCCGCTGGAGCGTCGGTCGCAGGGGACACCTCCGGGGACTACGAGAGGATGCTTCTTGCTCTTCTGGGTCAGGACAGTGACCATGCCTATCTTGCCCAGTCACACACTTCATGTGATCATGTCATATCAGAGAATAAACCTGTTATGCAGGGGAGACAGCCGTGGTGATTATGATGTTGTTTTTCCAGTGTACGGTACTGTTTGCTGCAGCTTGCATAACAGTGACGATGAAATAAATCATAGTGGAATGCGTTGGCTCATGGGACCTCCAAAAAAAAAA] [+] EMBL BI801109 [ATGTCACCCAAATCAACCAAGGATCTCAAGCTGATCCAAGGACGAGTTCCTTTCCACAGCTGCGTGGCAATCATCCCTGCTTCTGTTGCCCTGACAGGTACTTCGAGAAAGTCATCAGGTTGGCCATCGCAGGCATGGGAACAGACGAGAACTCCCTCACTAGGATCATTACCACTCGTGCCGAGGTGGATCTGAAGCTGATCACGGAGGCGTACCAGAAGAGGAACAGTGTCCCGCTGGAGCGTCGGTCGCAGGGGACACCTCCGGGGACTACGAGAGGATGCTTCTTGCTCTTCTGGGTCAGGACAGTGACCATGCCTATCTTGCCCAGTCACACACTTCATGTGATCATGTCATATCAGAGAATAAACCTGTTATGCAGGGGAGACAGCCGTGGTGATTATGATGTTGTTTTTCCAGTGTACGGTACTGTTTGCTGCAGCTTGCATAACAGTGACGATGAAATAAATCATAGTGGAATGCGTTGGCTCATGGGACCTCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7843#0 CCCCGCCGACGCGCACTCGATCCCCCCCGCCTCCGCCTCCGCCTCCGCCTCCGCGTCGCC 60 consensus_7843#1 ------------------------------------------------------------ consensus_7843#0 CATCTCGAGATCCCCCGCATGGCGACGCTCACCGTCCCCTCCGCCGTCCCGCCCGTCGCC 120 consensus_7843#1 ------------------------------------------------------------ consensus_7843#0 GACGACTGCGACCAGCTCCGCAAGGCCTTCCAAGGGTGGGGCACGAACGAGGCGCTCATC 180 consensus_7843#1 ------------------------------------------------------------ consensus_7843#0 ATCTCCATCCTGGCCCACCGCGACGCGGCGCAGCGGCGCGCCATCCGCCGCGCCTACGCC 240 consensus_7843#1 ------------------------------------------------------------ consensus_7843#0 GACACCTACGGCGAGGAGCTCCTCCGCAGCATCACCGACGAGATCTCCGGCGACTTCGAG 300 consensus_7843#1 ------------------------------------------------------------ consensus_7843#0 AGGGCCGTGATCCTGTGGACGCTGGACCCGGCGGAGCGCGACGCGGTGCTCGCCAACGAG 360 consensus_7843#1 ------------------------------------------------------------ consensus_7843#0 GTCGCGAGGAAGTGGTACCCAGGGAGCGGGAGCCGCGTGCTGGTCGAGATCGCGTGCGCG 420 consensus_7843#1 ------------------------------------------------------------ consensus_7843#0 CGCGGCCCCGCGCAGCTGTTCGCGGTCAGGCAGGCCTACCACGAGCGCTTCAAGCGCTCG 480 consensus_7843#1 ------------------------------------------------------------ consensus_7843#0 CTCGAGGAGGACGTCGCGGCGCACGCCACTGGTGACTTCCGCAAGCTCTTGGTGCCACTT 540 consensus_7843#1 ------------------------------------------------------------ consensus_7843#0 ATAAGTGCTTACCGCTATGAGGGGCCGGAAGTCAACACAAAGTTGGCACATTCAGAAGCC 600 consensus_7843#1 ------------------------------------------------------------ consensus_7843#0 AAAATTCTGCATGAGAAGATCCAGCATAAGGCATATGGTGATGATGAGATCATCAGAATT 660 consensus_7843#1 ------------------------------------------------------------ consensus_7843#0 CTCACTACTAGGAGCAAGGCTCAGTTGATTGCGACATTCAATCGTTACAATGATGAATAT 720 consensus_7843#1 ----------------------------------------------------------AT 2 ** consensus_7843#0 GGTCACCCAATCAAC-AAGGATCTCAAGGCTGATCCCAAGGACGAGTTCCTTTCCAC-GC 778 consensus_7843#1 GTCACCCAAATCAACCAAGGATCTCAAG-CTGATCC-AAGGACGAGTTCCTTTCCACAGC 60 * ** ******* ************ ******* ******************** ** consensus_7843#0 TGCGTG-CAATCATCCGCTGCTTCTGTTGCCCTGACAGGTACTTCGAGAAAGTCATCAGG 837 consensus_7843#1 TGCGTGGCAATCATCC-CTGCTTCTGTTGCCCTGACAGGTACTTCGAGAAAGTCATCAGG 119 ****** ********* ******************************************* consensus_7843#0 TTGGCCATCGCAGGCATGGGAACAGACGAGAACTCCCTCACTAGGATCATTACCACTCGT 897 consensus_7843#1 TTGGCCATCGCAGGCATGGGAACAGACGAGAACTCCCTCACTAGGATCATTACCACTCGT 179 ************************************************************ consensus_7843#0 GCCGAGGTGGATCTGAAGCTGATCACGGAGGCGTACCAGAAGAGGAACAGTGTCCCGCTG 957 consensus_7843#1 GCCGAGGTGGATCTGAAGCTGATCACGGAGGCGTACCAGAAGAGGAACAGTGTCCCGCTG 239 ************************************************************ consensus_7843#0 GAGCGTGCGGTCGCAGGGGACACCTCCGGGGACTACGAGAGGATGCTTCTTGCTCTTCTG 1017 consensus_7843#1 GAGCGT-CGGTCGCAGGGGACACCTCCGGGGACTACGAGAGGATGCTTCTTGCTCTTCTG 298 ****** ***************************************************** consensus_7843#0 GGTCAGGAGCAGTGAGCCATGCCTATCTTGCCCAGTCACACACTTCATGTGATCATGTCA 1077 consensus_7843#1 GGTCAGGA-CAGTGA-CCATGCCTATCTTGCCCAGTCACACACTTCATGTGATCATGTCA 356 ******** ****** ******************************************** consensus_7843#0 TATCAGAGAATAAACCTGTTATGCAGGGGACACAGCCGTGGTGATTATGATGTTGTTTTT 1137 consensus_7843#1 TATCAGAGAATAAACCTGTTATGCAGGGGAGACAGCCGTGGTGATTATGATGTTGTTTTT 416 ****************************** ***************************** consensus_7843#0 CCAGTGTACGGTACTGTTTGCTGCAGCTTGCATAACAGTGACGATGAAATAAATCATAGT 1197 consensus_7843#1 CCAGTGTACGGTACTGTTTGCTGCAGCTTGCATAACAGTGACGATGAAATAAATCATAGT 476 ************************************************************ consensus_7843#0 GGAATGCGTTGGCTCATGGGACCTCACTTATTTTGCAACTTTTTGACAGG 1247 consensus_7843#1 GGAATGCGTTGGCTCATGGGACCTC--CAAAAAAAAAA------------ 512 ************************* * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||