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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1656 fasta sequence
[CTCCCCTCCCCTCCACTCCGCGAGCCGCCACCTCCTCCGCCGCCGACGACGACGACGACGCCGCATCCCCAACCCTAGCCGCCGCTCGGCGGTGCTGCGACGTAGGAGCGGGTCTCCTCTCTGCATGGTCCGTTAGGGCTACCGAGCCGATCGACCGGCGGGCCTAAAACCCTAGCCGAGAGAGGCTGCGGGTTGGGTGGGGGTGGGGGCGTGCTCGACTCTCCGGCGGCGCCATGAAGCTGACGGTGAAGACCCTCAAGGGCACCCAGTTCGAGATCCGGGTGCAGCCCAACGACACCATTATGGCTGTCAAGAAGATCATTGAAGAGATACAAGGAAAGGATAGCTACCCATGGGGCCAACAGTTGCTGATTCACAATGGCAAGGTTTTGAAAGATGAAAGTACATTGGAAGAGAACAAAGTCAGTGAAGTTGGGTTTTTAGTTGTCATGCTTAGTAAGAGTAAAGCTTCTGGTTCCAGTGGAGCTTTAAGTTCACTGACTTCAAGCACCCCTTTGACCAGGCAAGAAACTCCTGCGGATGCTTCACGAGCAGCTCCTCAACCCCTAGTTGCACCTACAAGAACACCCCAGCCCGAAAGGCCACCTGCGGTAGCCCCTTCAAACGCATATGGTCAAGCAGCATCAAATCTATTGTCGGGAAGCAATCTTGACACTACGATTAACCAGCTGATGGAAATGGGTGGTGGCAGTTGGGACAGAGATAAAGTCCAAAGAGCTCTACGTGCAGCTTATAACAACCCAGAGCGTGCTGTTGAATATCTATATTCTGGCATTCCAATTACAGCGGAGGTTGCTGTTCCAGCAGGTGGTCAAGGGGCAAACACAACCGAGCCATCTTCTACTAGGGAAGCCAGTCTGTCTGGAATTCCAAACGCATCCCCGTTAAATCTTTTCCCACAGGGCGATGCAAATGATGGAGGTGGTGCTGGTGGTGGAACACTTGAGTTCCTTAGACATAACCAACAGTTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAGCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATTCAGGAGAACCATGATGAGTTCCTTCAGTTAATAAATGAGCCCTTTGATGGTGCTGATGGGGACTTCTTAGACCAACCTGACCAGGATGAGATGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCTGTGACAGGAACGAGCAACTCGCAGCAAATTACCTTCTTGAACATGCTGCTGATGAAGATTAGATGGAATTATTTAAACCCGCTTATTCTGTACACCTGCCCTG-CAATTTATCAGACTTTTGAAGTTTGCGGGTGCTTTGGATCCAAATTGAACAAGCTGAGATGGAGCTAACACCGCGTTGCATCGATTTATCTCTTGTACAATACTTGCTTTATTTAATTGCTGGCTTAGCATTCAAATACATGGCTTAACATTTATTCGAGCTGTCTGAGGGACGGATCCTTTTGTCCATCCGTTTTTAG-CCAGAAATTTCAATGGATGTGAATTGTGTTGACCACATTTTCTGTCCTGTTTGTGTTATTCAATTCGTGATTT]
[+] EMBL AK069065 [CTCCCCTCCCCTCCACTCCGCGAGCCGCCACCTCCTCCGCCGCCGACGACGACGACGACGCCGCATCCCCAACCCTAGCCGCCGCTCGGCGGTGCTGCGACGTAGGAGCGGGTCTCCTCTCTGCATGGTCCGTTAGGGCTACCGAGCCGATCGACCGGCGGGCCTAAAACCCTAGCCGAGAGAGGCTGCGGGTTGGGTGGGGGTGGGGGCGTGCTCGACTCTCCGGCGGCGCCATGAAGCTGACGGTGAAGACCCTCAAGGGCACCCAGTTCGAGATCCGGGTGCAGCCCAACGACACCATTATGGCTGTCAAGAAGATCATTGAAGAGATACAAGGAAAGGATAGCTACCCATGGGGCCAACAGTTGCTGATTCACAATGGCAAGGTTTTGAAAGATGAAAGTACATTGGAAGAGAACAAAGTCAGTGAAGTTGGGTTTTTAGTTGTCATGCTTAGTAAGAGTAAAGCTTCTGGTTCCAGTGGAGCTTTAAGTTCACTGACTTCAAGCACCCCTTTGACCAGGCAAGAAACTCCTGCGGATGCTTCACGAGCAGCTCCTCAACCCCTAGTTGCACCTACAAGAACACCCCAGCCCGAAAGGCCACCTGCGGTAGCCCCTTCAAACGCATATGGTCAAGCAGCATCAAATCTATTGTCGGGAAGCAATCTTGACACTACGATTAACCAGCTGATGGAAATGGGTGGTGGCAGTTGGGACAGAGATAAAGTCCAAAGAGCTCTACGTGCAGCTTATAACAACCCAGAGCGTGCTGTTGAATATCTATATTCTGGCATTCCAATTACAGCGGAGGTTGCTGTTCCAGCAGGTGGTCAAGGGGCAAACACAACCGAGCCATCTTCTACTAGGGAAGCCAGTCTGTCTGGAATTCCAAACGCATCCCCGTTAAATCTTTTCCCACAGGGCGATGCAAATGATGGAGGTGGTGCTGGTGGTGGAACACTTGAGTTCCTTAGACATAACCAACAGTTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAGCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATTCAGGAGAACCATGATGAGTTCCTTCAGTTAATAAATGAGCCCTTTGATGGTGCTGATGGGGACTTCTTAGACCAACCTGACCAGGATGAGATGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCTGTGACAGGAACGAGCAACTCGCAGCAAATTACCTTCTTGAACATGCTGCTGATGAAGATTAGATGGAATTATTTAAACCCGCTTATTCTGTACACCTGCCCTG CAATTTATCAGACTTTTGAAGTTTGCGGGTGCTTTGGATCCAAATTGAACAAGCTGAGATGGAGCTAACACCGCGTTGCATCGATTTATCTCTTGTACAATACTTGCTTTATTTAATTGCTGGCTTAGCATTCAAATACATGGCTTAACATTTATTCGAGCTGTCTGAGGGACGGATCCTTTTGTCCATCCGTTTTTAG CCAGAAATTTCAATGGATGTGAATTGTGTTGACCACATTTTCTGTCCTGTTTGTGTTATTCAATTCGTGATTT]
[+] EMBL CB641342 [ CCTCCGCCGCCGACGACGACGACGACGCCGCATCCCCAACCCTAGCCGCCGCTCGGCGGTGCTGCGACGTAGGAGCGGGTCTCCTCTCTGCATGATCCGTTAGGGCTACCGAGCCGATCGACCGGCGGGCCTAAAACCCTAGCCGAGAGAGGCTGCGGGTTGG ]
[+] EMBL AK104908 [ TCATGCTTAGTAAGAGTAAAGCTTCTGGTTCCAGTGGAGCTTTAAGTTCACTGACTTCAAGCACCCCTTTGACCAGGCAAGAAACTCCTGCGGATGCTTCACGAGCAGCTCCTCAACCCCTAGTTGCACCTACAAGAACACCCCAGCCCGAAAGGCCACCTGCGGAAGCCCCTTCAAACGCATATGGTCAAGCAGCATCAAATCTATTGTCGGGAAGCAATCTTGACACTACGATTAACCAGCTGATGGAAATGGGTGGTGGCAGTTGGGACAGAGATAAAGTCCAAAGAGCTCTACGTGCAGCTTATAACAACCCAGAGCGTGCTGTTGAATATCTATATTCTGGCATTCCAATTACAGCGGAGGTTGCTGTTCCAGCAGGTGGTCAAGGGGCAAACACAACCGAGCCATCTTCTACTAGGGAAGCCAGTCTGTCTGGAATTCCAAACGCATCCCCGTTAAATCTTTTCCCACAGGGCGATGCAAATGATGGAGGTGGTGCTGGTGGTGGAACACTTGAGTTCCTTAGACATAACCAACAGTTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAGCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATTCAGGAGAACCATGATGAGTTCCTTCAGTTAATAAATGAGCCCTTTGATGGTGCTGATGGGGACTTCTTAGACCAACCTGACCAGGATGAGATGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCTGTGACAGGAACGAGCAACTCGCAGCAAATTACCTTCTTGAACATGCTGCTGATGAAGATTAGATGGAATTATTTAAACCCGCTTATTCTGTACACCTGCCCTG CAATTTATCAGACTTTTGAAGTTTGCGGGTGCTTTGGATCCAAATTGAACAAGCTGAGATGGAGCTAACACCGCGTTGCATCGATTTATCTCTTGTACAATACTTGCTTTATTTAATTGCTGGCTTAGCATTCAAATACATGGCTTAACATTTATTCGAGCTGTCTGAGGGACGGATCCTTTTGTCCATCCGTTTTTAG CCAGAAATTTCAATGGATGTGAAT ]
[+] EMBL BI807161 [ GAGGCGATTGGACGGCTTGAAGGCATGGGATTTGACAGAGCACGTGTCATCGAAGCATTCTTCGCCTGTGACAGGAACGAGCCACTCGCAGCNAATTACCTTCTTGAACATGCTGCTGATGAAGATTAGATGGAATTATTTAAACCCGCTTATTCTGTACACCTGCCCTGCCNATTTATCAGACTTTGGAAGTTTGCGGGTGCTTTGGATCCCAATTGAACCAGCTGAGATGGAGCTAACCCCGCGTTGCATCGATTTATCTCTTGTACCATACTTGCTTTATTTAATTGCTGGCTTAGCATTCAAATACCTGGCTTAACATTTATTCGAGCTGTCTGAGGGACGGATCCTTTTGTCCATCCGTTTTTAGCCCAGAAATTTCCATGGATGTGAATTGTGTTGAaaaaaaaaa ]
consensusID : consensus_7856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence
[AGAACCNTGANGNGNTCCTTCAGTTAATAAATGAGCCCTTTGATGGTGCTGATGGGGACTTCTTAGACCAACCTGACCAGGATGAGATGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGCTTGAAGGCATGGGATTTGACAGAGCACGNGTCATCGAAGCATTCTTCGCCTGTGACAGGAATGAGCAACTCGCAGCAAATTACCTTCTTGAACATGCTGCTGATGAAGATTAGATGGAATTATTTAAACCCGCTTATTCTGTACACCTGCCCTGCAATTTATCAGACTTTGGAAGTTTGCGGGTGCTTTGGATCCAAATTGAACAAGCTGAGATGGAGCTAACACCGCGTTGCATCGATTTATCTCTTGTACAATACTTGCTTTATTTAATTGCTGGCTTAGCATTCAAATACATGGCTTAACATTTATTCGAGCTGTCTGAGGGACGGATCCTTTTGTCCATCCGGTTTTAGCCAGAAATTTCAATGGATGGGAATTGNGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGGCCGGCANCCGN]
[+] EMBL CA765529 [AGAACCNTGANGNGNTCCTTCAGTTAATAAATGAGCCCTTTGATGGTGCTGATGGGGACTTCTTAGACCAACCTGACCAGGATGAGATGCCCCATTCTATCAATGTCACACCTGAAGAGCAAGAGGCGATTGGACGGCTTGAAGGCATGGGATTTGACAGAGCACGNGTCATCGAAGCATTCTTCGCCTGTGACAGGAATGAGCAACTCGCAGCAAATTACCTTCTTGAACATGCTGCTGATGAAGATTAGATGGAATTATTTAAACCCGCTTATTCTGTACACCTGCCCTGCAATTTATCAGACTTTGGAAGTTTGCGGGTGCTTTGGATCCAAATTGAACAAGCTGAGATGGAGCTAACACCGCGTTGCATCGATTTATCTCTTGTACAATACTTGCTTTATTTAATTGCTGGCTTAGCATTCAAATACATGGCTTAACATTTATTCGAGCTGTCTGAGGGACGGATCCTTTTGTCCATCCGGTTTTAGCCAGAAATTTCAATGGATGGGAATTGNGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGGCCGGCANCCGN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7856#0 CTCCCCTCCCCTCCACTCCGCGAGCCGCCACCTCCTCCGCCGCCGACGACGACGACGACG 60
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 CCGCATCCCCAACCCTAGCCGCCGCTCGGCGGTGCTGCGACGTAGGAGCGGGTCTCCTCT 120
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 CTGCATGGTCCGTTAGGGCTACCGAGCCGATCGACCGGCGGGCCTAAAACCCTAGCCGAG 180
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 AGAGGCTGCGGGTTGGGTGGGGGTGGGGGCGTGCTCGACTCTCCGGCGGCGCCATGAAGC 240
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 TGACGGTGAAGACCCTCAAGGGCACCCAGTTCGAGATCCGGGTGCAGCCCAACGACACCA 300
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 TTATGGCTGTCAAGAAGATCATTGAAGAGATACAAGGAAAGGATAGCTACCCATGGGGCC 360
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 AACAGTTGCTGATTCACAATGGCAAGGTTTTGAAAGATGAAAGTACATTGGAAGAGAACA 420
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 AAGTCAGTGAAGTTGGGTTTTTAGTTGTCATGCTTAGTAAGAGTAAAGCTTCTGGTTCCA 480
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 GTGGAGCTTTAAGTTCACTGACTTCAAGCACCCCTTTGACCAGGCAAGAAACTCCTGCGG 540
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 ATGCTTCACGAGCAGCTCCTCAACCCCTAGTTGCACCTACAAGAACACCCCAGCCCGAAA 600
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 GGCCACCTGCGGTAGCCCCTTCAAACGCATATGGTCAAGCAGCATCAAATCTATTGTCGG 660
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 GAAGCAATCTTGACACTACGATTAACCAGCTGATGGAAATGGGTGGTGGCAGTTGGGACA 720
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 GAGATAAAGTCCAAAGAGCTCTACGTGCAGCTTATAACAACCCAGAGCGTGCTGTTGAAT 780
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 ATCTATATTCTGGCATTCCAATTACAGCGGAGGTTGCTGTTCCAGCAGGTGGTCAAGGGG 840
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 CAAACACAACCGAGCCATCTTCTACTAGGGAAGCCAGTCTGTCTGGAATTCCAAACGCAT 900
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 CCCCGTTAAATCTTTTCCCACAGGGCGATGCAAATGATGGAGGTGGTGCTGGTGGTGGAA 960
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 CACTTGAGTTCCTTAGACATAACCAACAGTTTCAGGCGCTTCGGGAAATGGTTCATACTA 1020
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 ACCCACAAATATTGCAGCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGA 1080
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 GGTTGATTCAGGAGAACCATGATGAGTTCCTTCAGTTAATAAATGAGCCCTTTGATGGTG 1140
consensus_7856#1 ------------AGAACCNTGANGNGNTCCTTCAGTTAATAAATGAGCCCTTTGATGGTG 48
****** *** * * *********************************
consensus_7856#0 CTGATGGGGACTTCTTAGACCAACCTGACCAGGATGAGATGCCCCATTCTATCAATGTCA 1200
consensus_7856#1 CTGATGGGGACTTCTTAGACCAACCTGACCAGGATGAGATGCCCCATTCTATCAATGTCA 108
************************************************************
consensus_7856#0 CACCTGAAGAGCAAGAGGCGATTGGACGGCTTGAAGGCATGGGATTTGACAGAGCACGTG 1260
consensus_7856#1 CACCTGAAGAGCAAGAGGCGATTGGACGGCTTGAAGGCATGGGATTTGACAGAGCACGNG 168
********************************************************** *
consensus_7856#0 TCATCGAAGCATTCTTCGCCTGTGACAGGAACGAGCAACTCGCAGCAAATTACCTTCTTG 1320
consensus_7856#1 TCATCGAAGCATTCTTCGCCTGTGACAGGAATGAGCAACTCGCAGCAAATTACCTTCTTG 228
******************************* ****************************
consensus_7856#0 AACATGCTGCTGATGAAGATTAGATGGAATTATTTAAACCCGCTTATTCTGTACACCTGC 1380
consensus_7856#1 AACATGCTGCTGATGAAGATTAGATGGAATTATTTAAACCCGCTTATTCTGTACACCTGC 288
************************************************************
consensus_7856#0 CCTGCAATTTATCAGACTTTTGAAGTTTGCGGGTGCTTTGGATCCAAATTGAACAAGCTG 1440
consensus_7856#1 CCTGCAATTTATCAGACTTTGGAAGTTTGCGGGTGCTTTGGATCCAAATTGAACAAGCTG 348
******************** ***************************************
consensus_7856#0 AGATGGAGCTAACACCGCGTTGCATCGATTTATCTCTTGTACAATACTTGCTTTATTTAA 1500
consensus_7856#1 AGATGGAGCTAACACCGCGTTGCATCGATTTATCTCTTGTACAATACTTGCTTTATTTAA 408
************************************************************
consensus_7856#0 TTGCTGGCTTAGCATTCAAATACATGGCTTAACATTTATTCGAGCTGTCTGAGGGACGGA 1560
consensus_7856#1 TTGCTGGCTTAGCATTCAAATACATGGCTTAACATTTATTCGAGCTGTCTGAGGGACGGA 468
************************************************************
consensus_7856#0 TCCTTTTGTCCATCCGTTTTTAGCCAGAAATTTCAATGGATGTGAATTGTGTTGACCACA 1620
consensus_7856#1 TCCTTTTGTCCATCCGGTTTTAGCCAGAAATTTCAATGGATGGGAATTGNGGTGA--AAA 526
**************** ************************* ****** * *** * *
consensus_7856#0 TTTTCTGTCCTGTTTGTGTTATTCAATTCGTGATTT-- 1656
consensus_7856#1 AAAAAAAAAAAAAAAAAAAAAAGCGGGCCGGCANCCGN 564
* * ** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||