cluster # 7857

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Oryza sativa
cluster # 7857 cluster # 7857 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7857#0 length = 1128 sequences # 4

consensus_7857#1 length = 137 sequences # 1

consensusID : consensus_7857#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1128
fasta sequence

                              [TTCTTCTCGTCTCCATCGCTGCAGGAGGAGGAGGCGGCGGAGGACGGCGAGCGGTCAGTGGCGGAGAGGGGAGTGTTCGGGGACGCGGGGTTTGCGAGGTGGGGGGAGCTCTTGCGCCTCGGATCGGCTCACTTCCCGACGCCTCAGCCCCCGCCGCGCCGCGGATTATTGCTGTTAGGTTAAAGGGATTGTGGTAGCGAGAAGCGGTGGGGTTGATGGAGTGCGTGGTGCAGGGGATCATCGAGACCCAGCATGTTGATGCTCTTGAGGTTCTTCTCCAGGGCCTCTCTGGTGTCCCAAAAGAACGTGTCAGAGTGCATGAGCTCTGTCTTAAAAGT-GGGCCAAATCTAGGAGTTGT-CCCATCA-GAGGTTCGTTTATTGTGTGACTTAGCTCAGTCCACGCCATCCTGGACCATAAGACATGTTGGAGGTGCCATGAGAGGTGCTGGTGCAGAGCAAATCTCAGTCCTTGTGCGGTCAATTGTAGAGAGCAAAGCCAGCAACAATGTATTGCGTTACTTCTACGGTATAGGGTACAAGTTAGATCATGAAGTTCTGAAGGGAGGATTTGCATTTCGTTTCCACCGAGGTGCCCAGATAACTGTGACCGTTACCTCTGTTAGCAAGATGACAAAACTCCATGCTACCAACGAAGCTGTGCCAATCACTCCTGCAATACAGCTAGTGGAAATCACGGCCCCTGCTGCTGCTGACAATTACAACGATGTCGTTTCAGCCGTCACTTCGTTCTGTGAATATCTAGCACCGCTTCTGCATCTCTCTAAACCAGGCAATTCGACTGGAATCGTCCCGACTGCAGGCGCTGCTGCCGCCTCACTCATGTCAAGTGGTGGTGGTGGTGGTGGTAAAACGTTGTGATCGGTCATATGTGTTGGCTGCAATGCCATGATGATCTCCATTGACCATCCCACTTAAAACATTGTTGCCATCTTTAGTTCTGTAACTTTTAGTCAGTAGCACCATGGTTTTTCTTGTAATGACATGCTAAATGCTGCCTACCTTGCTTTGGAGACTGGTAAATGAACACTGATCATTGCTTGCTTTTACTGAAGAGTGGAAACTGAATGCTGGGAAAGCTTGACGATAAAAAAAAAAAAAAAAAAAACTC]

[+] EMBL AK069578             [TTCTTCTCGTCTCCATCGCTGCAGGAGGAGGAGGCGGCGGAGGACGGCGAGCGGTCAGTGGCGGAGAGGGGAGTGTTCGGGGACGCGGGGTTTGCGAGGTGGGGGGAGCTCTTGCGCCTCGGATCGGCTCACTTCCCGACGCCTCAGCCCCCGCCGCGCCGCGGATTATTGCTGTTAGGTTAAAGGGATTGTGGTAGCGAGAAGCGGTGGGGTTGATGGAGTGCGTGGTGCAGGGGATCATCGAGACCCAGCATGTTGATGCTCTTGAGGTTCTTCTCCAGGGCCTCTCTGGTGTCCCAAAAGAACGTGTCAGAGTGCATGAGCTCTGTCTTAAAAGT GGGCCAAATCTAGGAGTTGT CCCATCA GAGGTTCGTTTATTGTGTGACTTAGCTCAGTCCACGCCATCCTGGACCATAAGACATGTTGGAGGTGCCATGAGAGGTGCTGGTGCAGAGCAAATCTCAGTCCTTGTGCGGTCAATTGTAGAGAGCAAAGCCAGCAACAATGTATTGCGTTACTTCTACGGTATAGGGTACAAGTTAGATCATGAAGTTCTGAAGGGAGGATTTGCATTTCGTTTCCACCGAGGTGCCCAGATAACTGTGACCGTTACCTCTGTTAGCAAGATGACAAAACTCCATGCTACCAACGAAGCTGTGCCAATCACTCCTGCAATACAGCTAGTGGAAATCACGGCCCCTGCTGCTGCTGACAATTACAACGATGTCGTTTCAGCCGTCACTTCGTTCTGTGAATATCTAGCACCGCTTCTGCATCTCTCTAAACCAGGCAATTCGACTGGAATCGTCCCGACTGCAGGCGCTGCTGCCGCCTCACTCATGTCAAGTGGTGGTGGTGGTGGTGGTAAAACGTTGTGATCGGTCATATGTGTTGGCTGCAATGCCATGATGATCTCCATTGACCATCCCACTTAAAACATTGTTGCCATCTTTAGTTCTGTAACTTTTAGTCAGTAGCACCATGGTTTTTCTTGTAATGACATGCTAAATGCTGCCTACCTTGCTTTGGAGACTGGTAAATGAACACTGATCATTGCTTGCTTTTACTGAAGAGTGGAAACTGAATGCTGGGA                                   ]
[+] EMBL AK104014             [                       GGAGGAGGAGGCGGCGGAGGACGGCGAGCGGTCAGTGGCGGAGAGGGGAGTGTTCGGGGACGCGGGGTTTGCGAGGTGGGGGGAGCTCTTGCGCCTCGGATCGGCTCACTTCCCGACGCCTCAGCCCCCGCCGCGCCGCGGATTATTGCTGTTAGGTTAAAGGGATTGTGGTAGCGAGAAGCGGTGGGGTTGATGGAGTGCGTGGTGCAGGGGATCATCGAGACCCAGCATGTTGATGCTCTTGAGGTTCTTCTCCAGGGCCTCTCTGGTGTCCCAAAAGAACGTGTCAGAGTGCATGAGCTCTGTCTTAAAAGT GGGCCAAATCTAGGAGTTGT CCCATCA GAGGTTCGTTTATTGTGTGACTTAGCTCAGTCCACGCCATCCTGGACCATAAGACATGTTGGAGGTGCCATGAGAGGTGCTGGTGCAGAGCAAATCTCAGTCCTTGTGCGGTCAATTGTAGAGAGCAAAGCCAGCAACAATGTATTGCGTTACTTCTACGGTATAGGGTACAAGTTAGATCATGAAGTTCTGAAGGGAGGATTTGCATTTCGTTTCCACCGAGGTGCCCAGATAACTGTGACCGTTACCTCTGTTAGCAAGATGACAAAACTCCATGCTACCAACGAAGCTGTGCCAATCACTCCTGCAATACAGCTAGTGGAAATCACGGCCCCTGCTGCTGCTGACAATTACAACGATGTCGTTTCAGCCGTCACTTCGTTCTGTGAATATCTAGCACCGCTTCTGCATCTCTCTAAACCAGGCAATTCGACTGGAATCGTCCCGACTGCAGGCGCTGCTGCCGCCTCACTCATGTCAAGTGGTGGTGGTGGTGGTGGTAAAACGTTGTGATCGGTCATATGTGTTGGCTGCAATGCCATGATGATCTCCATTGACCATCCCACTTAAAACATTGTTGCCATCTTTAGTTCTGTAACTTTTAGTCAGTAGCACCATGGTTTTTCTTGTAATGACATGCTAAATGCTGCCTACCTTGCTTTGGAGACTGGTAAATGAACACTGATCATT                                                                         ]
[+] EMBL C91801               [                                       GAGGACGGCGAGCGGTCAGTGGCGGAGAGGGGAGTGTTCGGGGACGCGGGGTTTGCGAGGTGGGGGGAGCTCTTGCGCCTCGGATCGGCTCACTTCCCGACGCCTCAGCCCCCGCCGCGCCGCGATTTATTGCTGTNAGGTTAAAGGGATTGTGGTAGCGAGAAGCGGTGGGGTTGATGGAGTNCGTNGTGCAGGGGATCATCGANACCCAGCATGTTGATGCTCTTGAGGTTCTTCTCCAGGGCCTCTCTGGTGTNCCAAAAGAACGTGTCANAGTGCATTAANCCTGTCTTAAAAGTNGGGCCAAATCTAGGAGTTGTCCCCATCANGAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CF322671             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CAAAACTCCATGCTACCAACGAAGCTGTGCCAATCACTCCTGCAATACAGCTAGTGGAAATCACGGCCCCTGCTGCTGCTGACAATTACAACGATGTCGTTTCAGCCGTCACTTCGTTCTGTGAATATCTAGCACCGCTTCTGCATCTCTCTAAACCAGGCAATTCGACTGGAATCGTCCCGACTGCAGGCGCTGCTGCCGCCTCACTCATGTCAAGTGGTGGTGGTGGTGGTGGTAAAACGTTGTGATCGGTCATATGTGTTGGCTGCAATGCCATGATGATCTCCATTGACCATCCCACTTAAAACATTGTTGCCATCTTTAGTTCTGTAACTTTTAGTCAGTAGCACCATGGTTTTTCTTGTAATGACATGCTAAATGCTGCCTACCTTGCTTTGGAGACTGGTAAATGAACACTGATCATTGCTTGCTTTTACTGAAGAGTGGAAACTGAATGCTGGGAAAGCTTGACGATAAAAAAAAAAAAAAAAAAAACTC]




>consensus_7857#0
TTCTTCTCGTCTCCATCGCTGCAGGAGGAGGAGGCGGCGGAGGACGGCGAGCGGTCAGTG
GCGGAGAGGGGAGTGTTCGGGGACGCGGGGTTTGCGAGGTGGGGGGAGCTCTTGCGCCTC
GGATCGGCTCACTTCCCGACGCCTCAGCCCCCGCCGCGCCGCGGATTATTGCTGTTAGGT
TAAAGGGATTGTGGTAGCGAGAAGCGGTGGGGTTGATGGAGTGCGTGGTGCAGGGGATCA
TCGAGACCCAGCATGTTGATGCTCTTGAGGTTCTTCTCCAGGGCCTCTCTGGTGTCCCAA
AAGAACGTGTCAGAGTGCATGAGCTCTGTCTTAAAAGTGGGCCAAATCTAGGAGTTGTCC
CATCAGAGGTTCGTTTATTGTGTGACTTAGCTCAGTCCACGCCATCCTGGACCATAAGAC
ATGTTGGAGGTGCCATGAGAGGTGCTGGTGCAGAGCAAATCTCAGTCCTTGTGCGGTCAA
TTGTAGAGAGCAAAGCCAGCAACAATGTATTGCGTTACTTCTACGGTATAGGGTACAAGT
TAGATCATGAAGTTCTGAAGGGAGGATTTGCATTTCGTTTCCACCGAGGTGCCCAGATAA
CTGTGACCGTTACCTCTGTTAGCAAGATGACAAAACTCCATGCTACCAACGAAGCTGTGC
CAATCACTCCTGCAATACAGCTAGTGGAAATCACGGCCCCTGCTGCTGCTGACAATTACA
ACGATGTCGTTTCAGCCGTCACTTCGTTCTGTGAATATCTAGCACCGCTTCTGCATCTCT
CTAAACCAGGCAATTCGACTGGAATCGTCCCGACTGCAGGCGCTGCTGCCGCCTCACTCA
TGTCAAGTGGTGGTGGTGGTGGTGGTAAAACGTTGTGATCGGTCATATGTGTTGGCTGCA
ATGCCATGATGATCTCCATTGACCATCCCACTTAAAACATTGTTGCCATCTTTAGTTCTG
TAACTTTTAGTCAGTAGCACCATGGTTTTTCTTGTAATGACATGCTAAATGCTGCCTACC
TTGCTTTGGAGACTGGTAAATGAACACTGATCATTGCTTGCTTTTACTGAAGAGTGGAAA
CTGAATGCTGGGAAAGCTTGACGATAAAAAAAAAAAAAAAAAAAACTC

consensusID : consensus_7857#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 137
fasta sequence

                              [GTAACTTTTAGTCAGTAGCNCCATGGTTTTTCTTGTAATGACATGCTAAATGCTGCCTACCTTGCTTTGGAGANTGGTAAATGAACACTGATNATTGCTTGNTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU094768             [GTAACTTTTAGTCAGTAGCNCCATGGTTTTTCTTGTAATGACATGCTAAATGCTGCCTACCTTGCTTTGGAGANTGGTAAATGAACACTGATNATTGCTTGNTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_7857#1
GTAACTTTTAGTCAGTAGCNCCATGGTTTTTCTTGTAATGACATGCTAAATGCTGCCTAC
CTTGCTTTGGAGANTGGTAAATGAACACTGATNATTGCTTGNTTTTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7857#0      TTCTTCTCGTCTCCATCGCTGCAGGAGGAGGAGGCGGCGGAGGACGGCGAGCGGTCAGTG 60
consensus_7857#1      ------------------------------------------------------------
                                                                                  

consensus_7857#0      GCGGAGAGGGGAGTGTTCGGGGACGCGGGGTTTGCGAGGTGGGGGGAGCTCTTGCGCCTC 120
consensus_7857#1      ------------------------------------------------------------
                                                                                  

consensus_7857#0      GGATCGGCTCACTTCCCGACGCCTCAGCCCCCGCCGCGCCGCGGATTATTGCTGTTAGGT 180
consensus_7857#1      ------------------------------------------------------------
                                                                                  

consensus_7857#0      TAAAGGGATTGTGGTAGCGAGAAGCGGTGGGGTTGATGGAGTGCGTGGTGCAGGGGATCA 240
consensus_7857#1      ------------------------------------------------------------
                                                                                  

consensus_7857#0      TCGAGACCCAGCATGTTGATGCTCTTGAGGTTCTTCTCCAGGGCCTCTCTGGTGTCCCAA 300
consensus_7857#1      ------------------------------------------------------------
                                                                                  

consensus_7857#0      AAGAACGTGTCAGAGTGCATGAGCTCTGTCTTAAAAGTGGGCCAAATCTAGGAGTTGTCC 360
consensus_7857#1      ------------------------------------------------------------
                                                                                  

consensus_7857#0      CATCAGAGGTTCGTTTATTGTGTGACTTAGCTCAGTCCACGCCATCCTGGACCATAAGAC 420
consensus_7857#1      ------------------------------------------------------------
                                                                                  

consensus_7857#0      ATGTTGGAGGTGCCATGAGAGGTGCTGGTGCAGAGCAAATCTCAGTCCTTGTGCGGTCAA 480
consensus_7857#1      ------------------------------------------------------------
                                                                                  

consensus_7857#0      TTGTAGAGAGCAAAGCCAGCAACAATGTATTGCGTTACTTCTACGGTATAGGGTACAAGT 540
consensus_7857#1      ------------------------------------------------------------
                                                                                  

consensus_7857#0      TAGATCATGAAGTTCTGAAGGGAGGATTTGCATTTCGTTTCCACCGAGGTGCCCAGATAA 600
consensus_7857#1      ------------------------------------------------------------
                                                                                  

consensus_7857#0      CTGTGACCGTTACCTCTGTTAGCAAGATGACAAAACTCCATGCTACCAACGAAGCTGTGC 660
consensus_7857#1      ------------------------------------------------------------
                                                                                  

consensus_7857#0      CAATCACTCCTGCAATACAGCTAGTGGAAATCACGGCCCCTGCTGCTGCTGACAATTACA 720
consensus_7857#1      ------------------------------------------------------------
                                                                                  

consensus_7857#0      ACGATGTCGTTTCAGCCGTCACTTCGTTCTGTGAATATCTAGCACCGCTTCTGCATCTCT 780
consensus_7857#1      ------------------------------------------------------------
                                                                                  

consensus_7857#0      CTAAACCAGGCAATTCGACTGGAATCGTCCCGACTGCAGGCGCTGCTGCCGCCTCACTCA 840
consensus_7857#1      ------------------------------------------------------------
                                                                                  

consensus_7857#0      TGTCAAGTGGTGGTGGTGGTGGTGGTAAAACGTTGTGATCGGTCATATGTGTTGGCTGCA 900
consensus_7857#1      ------------------------------------------------------------
                                                                                  

consensus_7857#0      ATGCCATGATGATCTCCATTGACCATCCCACTTAAAACATTGTTGCCATCTTTAGTTCTG 960
consensus_7857#1      -----------------------------------------------------------G 1
                                                                                 *

consensus_7857#0      TAACTTTTAGTCAGTAGCACCATGGTTTTTCTTGTAATGACATGCTAAATGCTGCCTACC 1020
consensus_7857#1      TAACTTTTAGTCAGTAGCNCCATGGTTTTTCTTGTAATGACATGCTAAATGCTGCCTACC 61
                      ****************** *****************************************

consensus_7857#0      TTGCTTTGGAGACTGGTAAATGAACACTGATCATTGCTTGCTTTTACTGAAGAGTGGAAA 1080
consensus_7857#1      TTGCTTTGGAGANTGGTAAATGAACACTGATNATTGCTTGNTTTTAAAAAAAAAAAAAAA 121
                      ************ ****************** ******** *****   ** *    ***

consensus_7857#0      CTGAATGCTGGGAAAGCTTGACGATAAAAAAAAAAAAAAAAAAAACTC 1128
consensus_7857#1      AAAAAAAAAAAAAAAA-------------------------------- 137
                         **       ***