These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1099 fasta sequence [TCTCCACGGCGCGGCGAGGCAGCGGCGGAGGGATGGTGGGCTCGGCCGCGTACTCCGCGGCGTCGGCCATCGTCGTGGTGATGGCCAAGGGCAAGGGGCGGGGCGGCAGAGGCGGCCCCTCTGGCGCCAACAAGGTTTCTGAGCGACGGCCTCCTAGGATAACTTCCAATGTGAAGCAGAGCTTGAGGATTCTAAAATTTTGGAAGGATTATGAAAGGAGGCAAACAAGTGGACCTCAGCCTGCTACTCGGTACCGCAAAAAGAAAGTAATAAAAGAAGTGCTTCCTGATGACACAGACTTCTACGATGATGCTTCTTCCACTCTTCACTAGTCAGGCTTGCCTCTCATTGCATTATCAGGACCTCACTACATTTTTTGATTGGTGGTTCAATGAAATGCTGACATTGTTTTGTCAATTAATCTAGCACAAATCAGGGTTTGGAAATTGCTTCCCCGGTTATTCTTGTGGACGGTTATAATGTATGTGGCTACTGGGGAAAGCTTAAGAAGGACTTCATGAATGGAAGGCAAGAGATTGCAAGACAAATGCTCATTGATGAGCTAGTATCTTTCAGTGCAGTAAGAGGTTTGTTTGTAGTAGGAAATTAGATCCGTTACGTATGGTCTCAAGCATGATTTCCTTAAAACTCACTTATGCTGTTTACTTAAGCTGTAGCTGTTGAAGCTGATAGATGTTAGTATACTCTGATTAGATGTTAGGTACTTCTTATCTCTATTAGAGCAAACACCAGTTCAATAGTGGCTTATAGTGAAAAAGGTAGTCATGGCTTACAAATGTATCATCTTGCCAAGTGGGGAGCATAAGTAGATGATGATTTGTTTTTATCTGCCGGTGGTGCGTAATTTCTTCTCAATAGCTATCTGATGTTCTCCCATTCCAGCATTCTTATATCATTTGTCATTGTCATGCTTGCAGAGATAAAGGTTGTAGTAGTATTTGATGCTGCAGCCTCTGGGCTTTCTCACACAAAGAAACCTTAAAGGGTTTGATGTGGTATATTCTGGTGACTTGTCTGCTGATTCTTGGATTGAGAAGGAGGTAATGCTGATAAATTCTTATTCAGAACAAAGGATACC] [+] EMBL CB673859 [TCTCCACGGCGCGGCGAGGCAGCGGCGGAGGGATGGTGGGCTCGGCCGCGTACTCCGCGGCGTCGGCCATCGTCGTGGTGATGGCCAAGGGCAAGGGGCGGGGCGGCAGAGGCGGCCCCTCTGGCGCCAACAAGGTTTCTGAGCGACGGCCTCCTAGGATAACTTCCAATGTGAAGCAGAGCTTGAGGATTCTAAAATTTTGGAAGGATTATGAAAGGAGGCAAACAAGTGGACCTCAGCCTGCTACTCGGTACCGCAAAAAGAAAGTAATAAAAGAAGTGCTTCCTGATGACACAGACTTCTACGATGATGCTTCTTCCACTCTTCACTAGTCAGGCTTGCCTCTCATTGCATTATCAGGACCTCACTACATTTTTTGATTGGTGGTTCAATGAAATGCTGACATTGTTTTGTCAATTAATCTAGCACAAATCAGGGTTTGGAAATTGCTTCCCCGGTTATTCTTGTGGACGGTTATAATGTATGTGGCTACTGGGGAAAGCTTAAGAAGGACTTCATGAATGGAAGGCAAGAGATTGCAAGACAAATGCTCATTGATGAGCTAGTATCTTTCAGTGCAGTAAGAGGTTTGTTTGTAGTAGGAAATTAGATCCGTTACGTATGGTCTCAAGCATGATTTCCTTAAAACTCACTTATGCTGTTTACTTAAGCTGTAGCTGTTGAAGCTGATAGATGTTAGTATACTCTGATTAGATGTTAGGTACTTCTTATCTCTATTAGAGCAAACACCAGTTCAATAGTGGCTTATAGTGAAAAAGGTAGTCATGGCTTACAAATGTATCATCTTGCCAAGTGGGGAGCATAAGTAGATGATGATTTGTTTTTATCTGCCGGTGGTG ] [+] EMBL CF322555 [ AGAAGGACTTCATGAATGGAAGGCAAGAGATTGCAAGACAAATGCTCATTGATGAGCTAGTATCTTTCAGTGCAGTAAGAGGTTTGTTTGTAGTAGGAAATTAGATCCGTTACGTATGGTCTCAAGCATGATTTCCTTAAAACTCACTTATGCTGTTTACTTAAGCTGTAGCTGTTGAAGCTGATAGATGTTAGTATACTCTGATTAGATGTTAGGTACTTCTTATCTCTATTAGAGCAAACACCAGTTCAATAGTGGCTTATAGTGAAAAAGGTAGTCATGGCTTACAAATGTATCATCTTGCCAAGTGGGGAGCATAAGTAGATGATGATTTGTTTTTATCTGCCGGTGGTGCGTAATTTCTTCTCAATAGCTATCTGATGTTCTCCCATTCCAGCATTCTTATATCATTTGTCATTGTCATGCTTGCAGAGATAAAGGTTGTAGTAGTATTTGATGCTGCAGCCTCTGGGCTTTCTCACACAAAGAAACCTTAAAGGGTTTGATGTGGTATATTCTGGTGACTTGTCTGCTGATTCTTGGATTGAGAAGGAGGTAATGCTGATAAATTCTTATTCAGAACAAAGGATACC] consensusID : consensus_7861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 727 fasta sequence [TGCTGCACGAGATAAAGGTTGTAGTAGTATTTGATGCTGCAGCCTCTGGGCTTTCTACACACAAAGAAACCTATAAAGGGGTTGATGTGGTATATTCTGGTGACTTGTCTGCTGATTCTTGGATTGAGAAGGAGGTTGAAGCTTTGGTGGCAGATGGATGCCCGAAAGTCTGGGTTGTAACATCTGATGCATTGGAGCAACAATTGGCACATGGAGAAGGTGCTCTTATTTGGAGCTCTAAAAGATTGGTCAAAGAGATAAAAGAATCAGAAAAGGAGCTTGATGAAGAGCTGAAGGAAACCAGATCAACATCGTTGCAAGGGAAGCTTTTTCAGCCCAAGCTGAAACCTAAAGTAGTGCATGCATTGAAAGATCTCCGGAATAAGCTTGAAGAAGAAGAGCGGAGAAAGAGGTGACTACAGTGTGACTGTATGACCTAGAGGCATGAACAAATGGCTAACAACCGCACCTGGGCATGAACAAGTTTGTAAAATGGCTGACAACCTCACTTGCTGCCTTGCATTGGATCCGTAGGGCATTGACATGATGTAAGATAGGATCTGGTTTTTTGTAAAGACCCCGTTTGGACTTCGTAGAGAGAGGCTTCAAGAGGTTAGGCATGCTTTTGCATCAGAACAATTTTGCAAGCTGCAGAGAAGAAAGGCATGAACTGTACAACAATGTAAATATCAGCAGATTCCTTTAAATCAAGCTCAACTAACGAGAT] [-] EMBL CB673858 [TGCTGCACGAGATAAAGGTTGTAGTAGTATTTGATGCTGCAGCCTCTGGGCTTTCTACACACAAAGAAACCTATAAAGGGGTTGATGTGGTATATTCTGGTGACTTGTCTGCTGATTCTTGGATTGAGAAGGAGGTTGAAGCTTTGGTGGCAGATGGATGCCCGAAAGTCTGGGTTGTAACATCTGATGCATTGGAGCAACAATTGGCACATGGAGAAGGTGCTCTTATTTGGAGCTCTAAAAGATTGGTCAAAGAGATAAAAGAATCAGAAAAGGAGCTTGATGAAGAGCTGAAGGAAACCAGATCAACATCGTTGCAAGGGAAGCTTTTTCAGCCCAAGCTGAAACCTAAAGTAGTGCATGCATTGAAAGATCTCCGGAATAAGCTTGAAGAAGAAGAGCGGAGAAAGAGGTGACTACAGTGTGACTGTATGACCTAGAGGCATGAACAAATGGCTAACAACCGCACCTGGGCATGAACAAGTTTGTAAAATGGCTGACAACCTCACTTGCTGCCTTGCATTGGATCCGTAGGGCATTGACATGATGTAAGATAGGATCTGGTTTTTTGTAAAGACCCCGTTTGGACTTCGTAGAGAGAGGCTTCAAGAGGTTAGGCATGCTTTTGCATCAGAACAATTTTGCAAGCTGCAGAGAAGAAAGGCATGAACTGTACAACAATGTAAATATCAGCAGATTCCTTTAAATCAAGCTCAACTAACGAGAT] [+] EMBL AK063613 [ GGTGACTTGTCTGCTGATTCTTGGATTGAGAAGGAGGTTGAAGCTTTGGTGGCAGATGGATGCCCGAAAGTCTGGGTTGTAACATCTGATGCATTGGAGCAACAATTGGCACATGGAGAAGGTGCTCTTATTTGGAGCTCTAAAAGATTGGTCAAAGAGATAAAAGAATCAGAAAAGGAGCTTGATGAAGAGCTGAAGGAAACCAGATCAACATCGTTGCAAGGGAAGCTTTTTCAGCACAAGCTGAAACCTAAAGTAGTGCATGCATTGAAAGATCTCCGGAATAAGCTTGAAGAAGAAGAGCGGAGAAAGAGGTGACTACAGTGTGACTGTATGACCTAGAGGCATGAACAAATGGCTAACAACCGCACCTGGGCATGAACAAGTTTGTAAAATGGCTGACAACCTCACTTGCTGCCTTGCATTGGATCCGTAGGGCATTGACATGATGTAAGATAGGATCTGGTTTTTTGTAAAGACCCCGTTTGGACTTCGTAGAGAGAGGCTTCAAGAGGTTAGGCATGCTTTTGCATCAGAACAATTTTGCAAGCTGCAGAGAAGAAAGGCATGAACTGTACAACAATGTAAATATCAGCAGATTCCTCTAAATCAAGCTCAACTAACGAGA ] consensusID : consensus_7861#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [CGAGCTTTCTCTCCTCTCTCTCTGCGGCTGCGCGGTCTCCACGGCGCGGCGCAGCGGCGGAGGGATGGTGGGCTCGGCCGCGTACTCCGCGGCGTCGGCCATCGTCGTGGTGATGGCCAAGGGCAAGGGGCGGGGCGGCAGANGCGGNCCCTCTGGCGCCAACAAGGTTTCTGAGCGACGGCCTCCTAGGATAACTTCCAATGTGAAGCACAGCTTGAGGATTCTAAAATTTNGGAAGGATTATNAAAGGAGGCAAACAAGTGGACCTCAGCCTGCTNCTCGGTACCGCAAAAAGAAAGTNATAAAAGAATTGCTTCCTGATGACACTGACTTCTACGATGATGCTTCTTCCACTCTTCACTACACAAATCAGGGTTTGGAAATTGCTTCCCCNGTTTATTCTTGTGG] [+] EMBL AF074731 [CGAGCTTTCTCTCCTCTCTCTCTGCGGCTGCGCGGTCTCCACGGCGCGGCGCAGCGGCGGAGGGATGGTGGGCTCGGCCGCGTACTCCGCGGCGTCGGCCATCGTCGTGGTGATGGCCAAGGGCAAGGGGCGGGGCGGCAGANGCGGNCCCTCTGGCGCCAACAAGGTTTCTGAGCGACGGCCTCCTAGGATAACTTCCAATGTGAAGCACAGCTTGAGGATTCTAAAATTTNGGAAGGATTATNAAAGGAGGCAAACAAGTGGACCTCAGCCTGCTNCTCGGTACCGCAAAAAGAAAGTNATAAAAGAATTGCTTCCTGATGACACTGACTTCTACGATGATGCTTCTTCCACTCTTCACTACACAAATCAGGGTTTGGAAATTGCTTCCCCNGTTTATTCTTGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7861#0 -----------------------------------TCTCCACGGCGCGGCGAGGCAGCGG 25 consensus_7861#2 CGAGCTTTCTCTCCTCTCTCTCTGCGGCTGCGCGGTCTCCACGGCGCGGCG---CAGCGG 57 consensus_7861#1 ------------------------------------------------------------ consensus_7861#0 CGGAGGGATGGTGGGCTCGGCCGCGTACTCCGCGGCGTCGGCCATCGT-CGTGGTGATGG 84 consensus_7861#2 CGGAGGGATGGTGGGCTCGGCCGCGTACTCCGCGGCGTCGGCCATCGT-CGTGGTGATGG 116 consensus_7861#1 ------------------------------------------TGCTGCACGAGATAAAGG 18 * ** * * * ** consensus_7861#0 CCAAGGGCAAGGGGCGGGGCGGCAGAGGCGGCCCCTCTGGCGCCAACAAGGTTTCTGAGC 144 consensus_7861#2 CCAAGGGCAAGGGGCGGGGCGGCAGANGCGGNCCCTCTGGCGCCAACAAGGTTTCTGAGC 176 consensus_7861#1 TTGTAG-TAGTATTTGATGCTGCAGCCTCTGGGCTTTCTACAC--ACAAAGAAACCTATA 75 * * * ** **** * * * * * * **** * * * consensus_7861#0 GACGGCCTCCTAGGATAACTTCCAATGTGAAGCAGAGCTTGAGGATTCTAAAATTTTGGA 204 consensus_7861#2 GACGGCCTCCTAGGATAACTTCCAATGTGAAGCACAGCTTGAGGATTCTAAAATTTNGGA 236 consensus_7861#1 AAGGGGTTGATGTGGTATATTCTG--GTGACTT---GTCTGCTGATTCTTGGATT-GAGA 129 * ** * * * ** *** **** * ** ****** *** ** consensus_7861#0 AGGATTATGAAAGGAGGCAAACAAGTGGACCTCAGCCTGCTACTCGGTACCGCAAAAAGA 264 consensus_7861#2 AGGATTATNAAAGGAGGCAAACAAGTGGACCTCAGCCTGCTNCTCGGTACCGCAAAAAGA 296 consensus_7861#1 AGGAGGTTGAAGCTTTGGTGGCAGATGGAT----GCCCGAAAGTCTGGGTTGTAACATCT 185 **** * ** * ** **** *** * ** * * ** * consensus_7861#0 AAGTAATAAAAGAAGTGCTTCCTGATGACACAGACTTCTACGATGATGCTTCTTCCACTC 324 consensus_7861#2 AAGTNATAAAAGAATTGCTTCCTGATGACACTGACTTCTACGATGATGCTTCTTCCACTC 356 consensus_7861#1 GATGCATTGGAGCAACAATTGGC----ACATGGAG----AAGGTGCTCTTATTTGGAGCT 237 * ** ** * ** *** ** * * ** * * ** * consensus_7861#0 TTCACTAGTCAGGCTTGCCTCTCATTGCATTATCAGGACCTCACTACATTTTT-TGATTG 383 consensus_7861#2 TTCACTACACAAATCAGGGTTTGG--AAATTGCTT---CCCCNGTTTATTCTTGTGG--- 408 consensus_7861#1 CTAAAAGATTGGTCAAAGAGATAAAAGAATCAGAAAAGGAGCTTGATGAAGAGCTGAAGG 297 * * * ** * ** consensus_7861#0 GTGGTTCAATGAAATGCTGACATTGTTTTGTCAATTAATCTAGCACAAATCAGGGTTTGG 443 consensus_7861#2 ------------------------------------------------------------ consensus_7861#1 AAACCAGATCAACATCGTTGCAAGGGAAGCTTTTTCAGCCCAAGCTGAAACCTAAAGTAG 357 consensus_7861#0 AAATTGCTTCCCCGGTTATTCTTGTGGACGGTTATAATGTATGTGGCTACTGGGGAAAGC 503 consensus_7861#2 ------------------------------------------------------------ consensus_7861#1 TGCATGCATTGAAAGATCTCCGGAATAAGCTTGAAGAAGAAGAGCGGAGAAAGAGGTGAC 417 consensus_7861#0 TTAAGAAGGACTTCATGAATGGAAGGCAAGAG--ATTGCAAGACAAATGCTCATTGATGA 561 consensus_7861#2 ------------------------------------------------------------ consensus_7861#1 TACAGTGTGACTGTATGACCTAGAGGCATGAACAAATGGCTAACAACCGCACCTGGGCAT 477 consensus_7861#0 GCTAGTATCTTTCAGTGCAGTAAGAGGTTTGTTTGTAGTAGGAAATTAGATCCGTTACGT 621 consensus_7861#2 ------------------------------------------------------------ consensus_7861#1 GAACAAGTTTGTAAAATGGCTGACAACCTCACTTGCTGCCTTGCATTGGATCCGTAGGGC 537 consensus_7861#0 ATGGTCTCAA-GCATGATTTCCTTAAAACTCACTTATGCTGTTTACTTAAGCTGTAGCTG 680 consensus_7861#2 ------------------------------------------------------------ consensus_7861#1 ATTGACATGATGTAAGATAGGATCTGGTTTTTTGTAAAGACCCCGTTTGGACTTCGTAGA 597 consensus_7861#0 TTGAAGCTGATAGATGTTAGTATACTCTGATTAGATGTTAGGTACTTCTTATCTCTATTA 740 consensus_7861#2 ------------------------------------------------------------ consensus_7861#1 GAGAGGCTTCAAGAGGTTAGG----CATGCTTTTGCATCAGAACAATTTTGCAAGCTGCA 653 consensus_7861#0 GAGCAAACACCAGTTCAATAGTGGCTTATAGTGAAAAAGGTAGTCATGGCTTACAAATGT 800 consensus_7861#2 ------------------------------------------------------------ consensus_7861#1 GAGAAGAAA---GGCATGAACTGTACAACAATGTAAATATCAGCAGATTCCTTTAAATCA 710 consensus_7861#0 A--TCATCTTGCCAAGTGGGGAGCATAAGTAGATGATGATTTGTTTTTATCTGCCGGTGG 858 consensus_7861#2 ------------------------------------------------------------ consensus_7861#1 AGCTCAACTAACGAGAT------------------------------------------- 727 consensus_7861#0 TGCGTAATTTCTTCTCAATAGCTATCTGATGTTCTCCCATTCCAGCATTCTTATATCATT 918 consensus_7861#2 ------------------------------------------------------------ consensus_7861#1 ------------------------------------------------------------ consensus_7861#0 TGTCATTGTCATGCTTGCAGAGATAAAGGTTGTAGTAGTATTTGATGCTGCAGCCTCTGG 978 consensus_7861#2 ------------------------------------------------------------ consensus_7861#1 ------------------------------------------------------------ consensus_7861#0 GCTTTCTCACACAAAGAAACCTTAAAGGGTTTGATGTGGTATATTCTGGTGACTTGTCTG 1038 consensus_7861#2 ------------------------------------------------------------ consensus_7861#1 ------------------------------------------------------------ consensus_7861#0 CTGATTCTTGGATTGAGAAGGAGGTAATGCTGATAAATTCTTATTCAGAACAAAGGATAC 1098 consensus_7861#2 ------------------------------------------------------------ consensus_7861#1 ------------------------------------------------------------ consensus_7861#0 C 1099 consensus_7861#2 - consensus_7861#1 - 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||