cluster # 7865

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Oryza sativa
cluster # 7865 cluster # 7865 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7865#0 length = 713 sequences # 4

consensus_7865#1 length = 363 sequences # 1

consensusID : consensus_7865#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 713
fasta sequence

                              [GCTGTCAAGTATAAGTGGAGCCAAGACAGAAACCTCGTCAATGGACGCATCAATGAGGACGAGCTCATCTCCTGAAGAGGTCGACAGATCTGGTGAGCTCTCGGTGTCCATCAGCAATGCAAGTGACCAAGAGCGGGAGTGGGTCGAGGAAGACGAGCCTGGTGTATATATTACCATCCGGGCTTTGCCTGGTGGTATCAGAGAACTCCGGCGTGTTCGATTCAGCCGAGAGAGGTTCAGCGAGATGCATGCCAGGCTATGGTGGGAAGAAAACCGAGCGAGGATACATGAACAGTATCTCTGAGATGAAAAAAAGAACTTGTCCTCGCGACACACACAAGTGGTTCTTCAACGAACAATGAATCCAGAGTTGTACATTTGGCACTAACAGTACGCCCTTTGCGGGCAGCAGCAGCCGTCTCAGTTGATACTGATTGTGCATGCATGTGAGCTTAATTTTAAAGCTTTGTTACTACTAACCTTAGGCTCTTGTTGTGGCAAATTCACATGTTCTTTTTCATGGTTTTGGCTTTTGCTTTGGACAGGAAGCTTTTGTTGAGGAACTCAAGACTATCGTAGAGTGATTAGCCTAGAAAAATAATAATTAGAAATTCCATATTCGCTGAACCTGTAGTTTGCAAAACCAAAAGTGTTTCTTCCAAGTTCCATACACCAGTACTTGGTATTTTTTTCTCTTCATCAGTAAATTGAAA]

[-] EMBL CF299404             [GCTGTCAAGTATAAGTGGAGCCAAGACAGAAACCTCGTCAATGGACGCATCAATGAGGACGAGCTCATCTCCTGAAGAGGTCGACAGATCTGGTGAGCTCTCGGTGTCCATCAGCAATGCAAGTGACCAAGAGCGGGAGTGGGTCGAGGAAGACGAGCCTGGTGTATATATTACCATCCGGGCTTTGCCTGGTGGTATCAGAGAACTCCGGCGTGTTCGATTCAGCCGAGAGAGGTTCAGCGAGATGCATGCCAGGCTATGGTGGGAAGAAAACCGAGCGAGGATACATGAACAGTATATATGAGATGAAAAAAAGAACTTGTCCTCGCGACACACACAAGTGGTTATTCAACGAACAATGAATCCAGAGTTGTACATTTGGCACTAACAGTACGCCCTTTGCGGGCAGCAGCAGCCGTCTCAGTTGATACTGATTGTGCATGCATGTGAGCTTAATTTTAAAGCTTTGTTGGTACTAAaaaaaaa                                                                                                                                                                                                                                   ]
[+] EMBL CB000159             [                                                                                                                                                                                                                CGGCGTGTTCGATTCAGCCGAGAGAGGTTCAGCCATATGCATGCCAGGCTATGGTGGGAAGAAAACCGAGCGAGGATACATGAACAGTATCTCTGAGATGAAAAAAAGAACTTGTCCTCGCGACACACACAAGTGGTTCTTCAACGAACAATGAATCCAGAGTTGTACATTTGGCACTAACAGTACGCCCTTTGCGGGCAGCAGCAGCCGTCTCAGTTGATACTGATTGTGCATGCATGTGAGCTTAATTTTAAAGCTTTGTTACTACTAACCTTAGGCTCTTGTTGTGGCAAATTCACATGTTCTTTTTCATGGTTTTGGCTTTTGCTTTGGACAGGAAGCTTTTGTTGAGGAACTCAAGACTATCGTAGAGTGATTAGCCTAGAAAAATAATAATTAGAAATTCCATATTCGCTGAACCTGTAGTTTGCAAAACCAAAAGTGTTTCTTCCAAGTTCCATACACCAGTACTTGGTATTTTTTTCTCTTCATCAGTAAATTGAAA]
[+] EMBL CB000764             [                                                                                                                                                                                                                  GCGTGTTCGATTCAGCCGAGAGAGGTTCAGCGAGATGCATGCCAGGCTATGGTGGGAAGAAAACCGAGCGAGGATACATGAACAGTATCTCTGAGATGAAAAAAAGAACTTGTCCTCGCGACACACACAAGTGGTTCTTCAACGAACAATGAATCCAGAGTTGTACATTTGGCACTAACAGTACGCCCTTTGCGGGCAGCAGCAGCCGTCTCAGTTGATACTGATTGTGCATGCATGTGAGCTTAATTTTAAAGCTTTGTTACTACTAACCTTAGGCTCTTGTTGTGGCAAATTCACATGTTCTTTTTCATGGTTTTGGCTTTTGCTTTGGACAGGAAGCTTTTGTTGAGGAACTCAAGACTATCGTAGAGTGATTAGCCTAGAAAAATAATAATTAGAAATTCCATATTCGCTGAACCTGTAGTTTGCAAAACCAAAAGTGTTTCTTCCAAGTTCCATACACCAGTACTTGGTATTTTTTTCTCTTCATCAGTAAATTGAAA]
[+] EMBL AK059315             [                                                                                                                                                                                                                                                                                     GCGAGGATACATGAACAGTATCTCTGAGATGAAAAAAAGAACTTGTCCTCGCGACACACACAAGTGGTTCTTCAACGAACAATGAATCCAGAGTTGTACATTTGGCACTAACAGTACGCCCTTTGCGGGCAGCAGCAGCCGTCTCAGTTGATACTGATTGTGCATGCATGTGAGCTTAATTTTAAAGCTTTGTTACTACTAACCTTAGGCTCTTGTTGTGGCAAATTCACATGTTCTTTTTCATGGTTTTGGCTTTTGCTTTGGACAGGAAGCT                                                                                                                                                                  ]




>consensus_7865#0
GCTGTCAAGTATAAGTGGAGCCAAGACAGAAACCTCGTCAATGGACGCATCAATGAGGAC
GAGCTCATCTCCTGAAGAGGTCGACAGATCTGGTGAGCTCTCGGTGTCCATCAGCAATGC
AAGTGACCAAGAGCGGGAGTGGGTCGAGGAAGACGAGCCTGGTGTATATATTACCATCCG
GGCTTTGCCTGGTGGTATCAGAGAACTCCGGCGTGTTCGATTCAGCCGAGAGAGGTTCAG
CGAGATGCATGCCAGGCTATGGTGGGAAGAAAACCGAGCGAGGATACATGAACAGTATCT
CTGAGATGAAAAAAAGAACTTGTCCTCGCGACACACACAAGTGGTTCTTCAACGAACAAT
GAATCCAGAGTTGTACATTTGGCACTAACAGTACGCCCTTTGCGGGCAGCAGCAGCCGTC
TCAGTTGATACTGATTGTGCATGCATGTGAGCTTAATTTTAAAGCTTTGTTACTACTAAC
CTTAGGCTCTTGTTGTGGCAAATTCACATGTTCTTTTTCATGGTTTTGGCTTTTGCTTTG
GACAGGAAGCTTTTGTTGAGGAACTCAAGACTATCGTAGAGTGATTAGCCTAGAAAAATA
ATAATTAGAAATTCCATATTCGCTGAACCTGTAGTTTGCAAAACCAAAAGTGTTTCTTCC
AAGTTCCATACACCAGTACTTGGTATTTTTTTCTCTTCATCAGTAAATTGAAA

consensusID : consensus_7865#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence

                              [CNGNGNACGCGTGGGCAAGAGCGGGAGTGGGTCGAGGAAGACGAGCCTGGTGTATATATTACCATCCGGGCTTTGCCTGGTGGTATCAGAGAACTCCGGCGTGTTCGATTCAGGTTTGTCTCCCATCCTTCTTGTAACGTCTTTCTTTGTAAATAGGATTGTCTTGTTGGTAATCCGTAAATTGACAAAGTAGAAAAGGTCAGTAATCTGATTTCAAGAACAGCCTAATGCTAATTGCTTGAATCTCCATGATCGAAGAATTTGGAAGCAACTGAATTGCTAGCTACTAGCAGATGATCATGGAAAGAGACTTAATTATACTCTCTTGCTTGCAGCCGAGAGAGGTTCAGCGAGATGCATGCC]

[+] EMBL OS1344A              [CNGNGNACGCGTGGGCAAGAGCGGGAGTGGGTCGAGGAAGACGAGCCTGGTGTATATATTACCATCCGGGCTTTGCCTGGTGGTATCAGAGAACTCCGGCGTGTTCGATTCAGGTTTGTCTCCCATCCTTCTTGTAACGTCTTTCTTTGTAAATAGGATTGTCTTGTTGGTAATCCGTAAATTGACAAAGTAGAAAAGGTCAGTAATCTGATTTCAAGAACAGCCTAATGCTAATTGCTTGAATCTCCATGATCGAAGAATTTGGAAGCAACTGAATTGCTAGCTACTAGCAGATGATCATGGAAAGAGACTTAATTATACTCTCTTGCTTGCAGCCGAGAGAGGTTCAGCGAGATGCATGCC]




>consensus_7865#1
CNGNGNACGCGTGGGCAAGAGCGGGAGTGGGTCGAGGAAGACGAGCCTGGTGTATATATT
ACCATCCGGGCTTTGCCTGGTGGTATCAGAGAACTCCGGCGTGTTCGATTCAGGTTTGTC
TCCCATCCTTCTTGTAACGTCTTTCTTTGTAAATAGGATTGTCTTGTTGGTAATCCGTAA
ATTGACAAAGTAGAAAAGGTCAGTAATCTGATTTCAAGAACAGCCTAATGCTAATTGCTT
GAATCTCCATGATCGAAGAATTTGGAAGCAACTGAATTGCTAGCTACTAGCAGATGATCA
TGGAAAGAGACTTAATTATACTCTCTTGCTTGCAGCCGAGAGAGGTTCAGCGAGATGCAT
GCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7865#0      GCTGTCAAGTATAAGTGGAGCCAAGACAGAAACCTCGTCAATGGACGCATCAATGAGGAC 60
consensus_7865#1      ------------------------------------------------------------
                                                                                  

consensus_7865#0      GAGCTCATCTCCTGAAGAGGTCGACAGATCTGGTGAGCTCTCGGTGTCCATCAGCAATGC 120
consensus_7865#1      ---------------------------------------------------CNGNGN-AC 8
                                                                         * *     *

consensus_7865#0      AAGTGACCAAGAGCGGGAGTGGGTCGAGGAAGACGAGCCTGGTGTATATATTACCATCCG 180
consensus_7865#1      GCGTGGGCAAGAGCGGGAGTGGGTCGAGGAAGACGAGCCTGGTGTATATATTACCATCCG 68
                        ***  *****************************************************

consensus_7865#0      GGCTTTGCCTGGTGGTATCAGAGAACTCCGGCGTGTTCGATTCAGCCGAGAGAGGTTCAG 240
consensus_7865#1      GGCTTTGCCTGGTGGTATCAGAGAACTCCGGCGTGTTCGATTCAGGTT-----TGTCTCC 123
                      *********************************************         **    

consensus_7865#0      CGAGATGCATGCCAGGCTATGGTGGGAAGAAAACCGAGCGAGGATACATGAACAGTATCT 300
consensus_7865#1      CATCCTTCTTGTAACGTCTTTCTTTGTAAA--------TAGGATTGTCTTGTTGGTAATC 175
                      *    * * **  * *   *  *  * * *           *  *   *     ***   

consensus_7865#0      CTGAGATGAAAAAAAGAACTTGTCCTCGCGACACACACAAGTGGTTCTTCAACGAACAAT 360
consensus_7865#1      CGTAAATTGACAAAGTA----------GAAAAGGTCAGTAATCTGATTTCAA-GAACAGC 224
                      *  * **  * ***  *          *  *    **  * *     ***** *****  

consensus_7865#0      GAATCCAGAGTTGTACATTTGGCACTAACAGTACGCCCTTTGCGGGCAGCAGCAGCCGTC 420
consensus_7865#1      CTAATGCTAATTGCTTGAATCTCCATGATCGAAGAATTT-----GGAAGCAACTGAATTG 279
                        *     * ***      *  *  * *  * *     *     ** **** * *   * 

consensus_7865#0      TCAGTTGATACTGATTGTGCATGCATGTGAGCTTAATTTTAAAGCTTTGTTACTACTAAC 480
consensus_7865#1      CTAGCTACTAGCAGATGATCATGGAAAGAGACTTAATTATA---CTCTCTTGCTTGCAGC 336
                        ** *  **     **  **** *      ******* **   ** * ** **   * *

consensus_7865#0      CTTAGGCTCTTGTTGTGGCAAATTCACATGTTCTTTTTCATGGTTTTGGCTTTTGCTTTG 540
consensus_7865#1      CGAGAGAGGTT----CAGCGAGAT-GCATGCC---------------------------- 363
                      *    *   **      ** *  *  ****                              

consensus_7865#0      GACAGGAAGCTTTTGTTGAGGAACTCAAGACTATCGTAGAGTGATTAGCCTAGAAAAATA 600
consensus_7865#1      ------------------------------------------------------------
                                                                                  

consensus_7865#0      ATAATTAGAAATTCCATATTCGCTGAACCTGTAGTTTGCAAAACCAAAAGTGTTTCTTCC 660
consensus_7865#1      ------------------------------------------------------------
                                                                                  

consensus_7865#0      AAGTTCCATACACCAGTACTTGGTATTTTTTTCTCTTCATCAGTAAATTGAAA 713
consensus_7865#1      -----------------------------------------------------