cluster # 7871

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Oryza sativa
cluster # 7871 cluster # 7871 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7871#0 length = 757 sequences # 2

consensus_7871#1 length = 239 sequences # 1
consensus_7871#2 length = 192 sequences # 2

consensusID : consensus_7871#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 757
fasta sequence

                              [CTTTTTTTTTGGACAACCTAGTGCACGGTCATTCTCAGAAGCCCTCGGCGGTAGGGCTCTTTTGCAGCAATGCCCATGTCCTTTATTACAGTGTTTTAATATTTATTCATTTCGGATGTGACCGTGCTCGTTATTAAGACTTTAATCCACCCGAGTACGCTACACGATCTCATAGCTTAATTCGTAATTGATGACATGATGAAAAAGTTTGGATGTCATGCGTCCGACCAAGTGATATCGTACTCGCCGACGTCCTCGCCGGTGATGCCGAGCGCGTCCCACACGGCCTGCGACGCGTCGACGACGTTGGGGCGGCACGGCGGCTGGTAGGCGTGCTCCTCGTCGCAGCCGCGCTGGGAGTCGCACTCGTCGACCACCTTGGCGAGCACGGACCTGCCGTTGGCGTTGATCCGGACGCTCTTGCCGCAGCGGCTGCCGCCGGCGTACCACCCCGTGGACAGCGCCACCACCAGCTCCGTGTTGCTGTGGTACATCTCGTCGCACTCCGACGGGCCGCCGCCGTCGCCGCCGGCGTCGAAGTCGTTCAGCGTCATCACCGCGTCGGTGCTGCTCCCGGTGGTCGGCGGCGAGCAAGTGTACGTCGGGTAGGATTGGCCGGCCTTGCAGCAGTCCTGGCACCGGTGGGTCGTGCTCGACCGGATCGCGCCGCTCGGGTTGCACTCGCCGTCGCCGCGCGAGAGTCCAGGGAGGGAGACGAGCACGACGCCCGCGATGGCGAGCGCGAGGAGGCAATTGG]

[+] EMBL CB668762             [CTTTTTTTTTGGACAACCTAGTGCACGGTCATTCTCAGAAGCCCTCGGCGGTAGGGCTCTTTTGCAGCAATGCCCATGTCCTTTATTACAGTGTTTTAATATTTATTCATTTCGGATGTGACCGTGCTCGTTATTAAGACTTTAATCCACCCGAGTACGCTACACGATCTCATAGCTTAATTCGTAATTGATGACATGATGAAAAAGTTTGGATGTCATGCGTCCGACCAAGTGATATCGTACTCGCCGACGTCCTCGCCGGTGATGCCGAGCGCGTCCCACACGGCCTGCGACGCGTCGACGACGTTGGGGCGGCACGGCGGCTGGTAGGCGTGCTCCTCGTCGCAGCCGCGCTGGGAGTCGCACTCGTCGACCACCTTGGCGAGCACGGACCTGCCGTTGGCGTTGATCCGGACGCTCTTGCCGCAGCGGCTGCCGCCGGCGTACCACCCCGTGGACAGCGCCACCACCAGCTCCGTGTTGCTGTGGTACATCTCGTCGCACTCCGACGGGCCGCCGCCGTCGCCGCCGGCGTCGAAGTCGTTCAGCGTCATCACCGCGTCGGTGCTGCTCCCGGTGGTCGGCGGCGAGCAAGTGTACGTCGGGTAGGATTGGCCGGCCTTGCAGCAGTCCTGGCACCGGTGGGTCGTGCTCGACCGGATCGCGCCGCTCGGGTTGCACTCGCCGTCGCCGCGCGAGAGTCCAGGGAGGGAGACGAGCACGACGCCCGCGATGGCGAGCGCGAGGA         ]
[-] EMBL CB668761             [                    GTGCACGGTCATTCTCAGAAGTCCTCGGCGGTAGGGCTCTTTTGCAGCAATGCCCATGTCCTTTATTACAGTGTTTTAATATTTATTCATTTCGGATGTGACCGTGCTCGTTATTAAGACTTTAATCCACCCGAGTACGCTACACGATCTCATAGCTTAATTCGTAATTGATGACATGATGAAAAAGTTTGGATGTCATGCGTCCGACCAAGTGATATCGTACTCGCCGACGTCCTCGCCGGTGATGCCGAGCGCGTCCCACACGGCCTGCGACGCGTCGACGACGTTGGGGCGGCACGGCGGCTGGTAGGCGTGCTCCTCGTCGCAGCCGCGCTGGGAGTCGCACTCGTCGACCACCTTGGCGAGCACGGACCTGCCGTTGGCGTTGATCCGGACGCTCTTGCCGCAGCGGCTGCCGCCGGCGTACCACCCCGTGGACAGCGCCACCACCAGCTCCGTGTTGCTGTGGTACATCTCGTCGCACTCCGACGGGCCGCCGCCGTCGCCGCCGGCGTCGAAGTCGTTCAGCGTCATCACCGCGTCGGTGCTGCTCCCGGTGGTCGGCGGCGAGCAAGTGTACGTCGGGTAGGATTGGCCGGCCTTGCAGCAGTCCTGGCACCGGTGGGTCGTGCTCGACCGGATCGCGCCGCTCGGGTTGCACTCGCCGTCGCCGCGCGAGAGTCCAGGGAGGGAGACGAGCACGACGCCCGCGATGGCGAGCGCGAGGAGGCAATTGG]




>consensus_7871#0
CTTTTTTTTTGGACAACCTAGTGCACGGTCATTCTCAGAAGCCCTCGGCGGTAGGGCTCT
TTTGCAGCAATGCCCATGTCCTTTATTACAGTGTTTTAATATTTATTCATTTCGGATGTG
ACCGTGCTCGTTATTAAGACTTTAATCCACCCGAGTACGCTACACGATCTCATAGCTTAA
TTCGTAATTGATGACATGATGAAAAAGTTTGGATGTCATGCGTCCGACCAAGTGATATCG
TACTCGCCGACGTCCTCGCCGGTGATGCCGAGCGCGTCCCACACGGCCTGCGACGCGTCG
ACGACGTTGGGGCGGCACGGCGGCTGGTAGGCGTGCTCCTCGTCGCAGCCGCGCTGGGAG
TCGCACTCGTCGACCACCTTGGCGAGCACGGACCTGCCGTTGGCGTTGATCCGGACGCTC
TTGCCGCAGCGGCTGCCGCCGGCGTACCACCCCGTGGACAGCGCCACCACCAGCTCCGTG
TTGCTGTGGTACATCTCGTCGCACTCCGACGGGCCGCCGCCGTCGCCGCCGGCGTCGAAG
TCGTTCAGCGTCATCACCGCGTCGGTGCTGCTCCCGGTGGTCGGCGGCGAGCAAGTGTAC
GTCGGGTAGGATTGGCCGGCCTTGCAGCAGTCCTGGCACCGGTGGGTCGTGCTCGACCGG
ATCGCGCCGCTCGGGTTGCACTCGCCGTCGCCGCGCGAGAGTCCAGGGAGGGAGACGAGC
ACGACGCCCGCGATGGCGAGCGCGAGGAGGCAATTGG

consensusID : consensus_7871#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 239
fasta sequence

                              [GAGTACGATATATCTTGGTCGGACGCATGAGATCGACCGGTCCGTGATACTGTTCCAAATCCAAACTTTTTCATCATATCATCGACGAAGAGATCGTGTAGCGTACTCGGGTGGATTAAAGTCTTAATAACGAGTACGGTCACATCCGAAAGGAATAAATATTACAACGTTTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF317497             [GAGTACGATATATCTTGGTCGGACGCATGAGATCGACCGGTCCGTGATACTGTTCCAAATCCAAACTTTTTCATCATATCATCGACGAAGAGATCGTGTAGCGTACTCGGGTGGATTAAAGTCTTAATAACGAGTACGGTCACATCCGAAAGGAATAAATATTACAACGTTTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_7871#1
GAGTACGATATATCTTGGTCGGACGCATGAGATCGACCGGTCCGTGATACTGTTCCAAAT
CCAAACTTTTTCATCATATCATCGACGAAGAGATCGTGTAGCGTACTCGGGTGGATTAAA
GTCTTAATAACGAGTACGGTCACATCCGAAAGGAATAAATATTACAACGTTTAATAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_7871#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 192
fasta sequence

                              [TTTCATCATATCATCGACGAAGAGATCGTGTAGCGTACTCGGGTGGATTAAAGTCTTAATAACGAGTACGGTCACATCCGAAAGGAATAAATATTACAACGTTTAATAAAGGACATGGGCATTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACGTACCGTAT]

[+] EMBL CF321252             [TTTCATCATATCATCGACGAAGAGATCGTGTAGCGTACTCGGGTGGATTAAAGTCTTAATAACGAGTACGGTCACATCCGAAAGGAATAAATATTACAACGTTTAATAAAGGACATGGGCATTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACGTACCGTAT]
[-] EMBL CF321251             [ TTCATCATATCATCGACGAAGAGATCGTGTAGCGTACTCGGGTGGATTAAAGTTTTAATAACGAGTACGGTCCCATCCGAAAGGAATAAATATTACAACGTTTAATAAAGGACATGGGCATTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA                                      ]




>consensus_7871#2
TTTCATCATATCATCGACGAAGAGATCGTGTAGCGTACTCGGGTGGATTAAAGTCTTAAT
AACGAGTACGGTCACATCCGAAAGGAATAAATATTACAACGTTTAATAAAGGACATGGGC
ATTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGT
TACGTACCGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7871#1      GAGTACGATATATCTTGGTCGGACGCATGAGATCGACCGGTCCGTGATACTGTTCCAAAT 60
consensus_7871#2      ------------------------------------------------------------
consensus_7871#0      -------CTTTTTTTTTGGACAACCTAGTGCACGGTCATTCTCAGAAGCCCTCGGCGGTA 53
                                                                                  

consensus_7871#1      CCAAACTTTTTCA-------TCATATCATCGACGAAGAGATCGTGTAGCGTACTCGGGTG 113
consensus_7871#2      --------TTTCA-------TCATATCATCGACGAAGAGATCGTGTAGCGTACTCGGGTG 45
consensus_7871#0      GGGCTCTTTTGCAGCAATGCCCATGTCCTTTATTACAGTGTTTTAATATTTATTCATTTC 113
                              ** **        *** ** *  *  *     *  *      ** **   * 

consensus_7871#1      GATTAAAGTCTTAATAACGAGTACGGTCACATCCGAAAGGAATAAATATTACAACGTTTA 173
consensus_7871#2      GATTAAAGTCTTAATAACGAGTACGGTCACATCCGAAAGGAATAAATATTACAACGTTTA 105
consensus_7871#0      GGATGTGACCGTGCTCGTTATTAAGACTTTAATCCACCCGAGT--ACGCTACACGATCTC 171
                      *  *     * *  *    * ** *     *  * *   ** *  *   ****   * * 

consensus_7871#1      ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 233
consensus_7871#2      ATAAAGGACATGGGCATTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 165
consensus_7871#0      ATAGCTTAATTCGTAATTGATGACATGATGAAAAAGTTTGGATGTCATGCGTCCGACCAA 231
                      ***    *       *      * *  *  *****      *    *        *  **

consensus_7871#1      AAAAAA------------------------------------------------------ 239
consensus_7871#2      CCCCTGTCATGCCGTTACGTACCGTAT--------------------------------- 192
consensus_7871#0      GTGATATCGTACTCGCCGACGTCCTCGCCGGTGATGCCGAGCGCGTCCCACACGGCCTGC 291
                                                                                  

consensus_7871#1      ------------------------------------------------------------
consensus_7871#2      ------------------------------------------------------------
consensus_7871#0      GACGCGTCGACGACGTTGGGGCGGCACGGCGGCTGGTAGGCGTGCTCCTCGTCGCAGCCG 351
                                                                                  

consensus_7871#1      ------------------------------------------------------------
consensus_7871#2      ------------------------------------------------------------
consensus_7871#0      CGCTGGGAGTCGCACTCGTCGACCACCTTGGCGAGCACGGACCTGCCGTTGGCGTTGATC 411
                                                                                  

consensus_7871#1      ------------------------------------------------------------
consensus_7871#2      ------------------------------------------------------------
consensus_7871#0      CGGACGCTCTTGCCGCAGCGGCTGCCGCCGGCGTACCACCCCGTGGACAGCGCCACCACC 471
                                                                                  

consensus_7871#1      ------------------------------------------------------------
consensus_7871#2      ------------------------------------------------------------
consensus_7871#0      AGCTCCGTGTTGCTGTGGTACATCTCGTCGCACTCCGACGGGCCGCCGCCGTCGCCGCCG 531
                                                                                  

consensus_7871#1      ------------------------------------------------------------
consensus_7871#2      ------------------------------------------------------------
consensus_7871#0      GCGTCGAAGTCGTTCAGCGTCATCACCGCGTCGGTGCTGCTCCCGGTGGTCGGCGGCGAG 591
                                                                                  

consensus_7871#1      ------------------------------------------------------------
consensus_7871#2      ------------------------------------------------------------
consensus_7871#0      CAAGTGTACGTCGGGTAGGATTGGCCGGCCTTGCAGCAGTCCTGGCACCGGTGGGTCGTG 651
                                                                                  

consensus_7871#1      ------------------------------------------------------------
consensus_7871#2      ------------------------------------------------------------
consensus_7871#0      CTCGACCGGATCGCGCCGCTCGGGTTGCACTCGCCGTCGCCGCGCGAGAGTCCAGGGAGG 711
                                                                                  

consensus_7871#1      ----------------------------------------------
consensus_7871#2      ----------------------------------------------
consensus_7871#0      GAGACGAGCACGACGCCCGCGATGGCGAGCGCGAGGAGGCAATTGG 757