These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1407 fasta sequence [AACCATCGCCAGTCGCCGCCCGCGCGGAGCATCCATCCTCAACCTCCCAAGTTCGGCGCCCAATCCCGGCGATGGAGATCGCCGACCTCCCCATCGCCACCTCCCACCGCGCCAACCTCCTCGCCGCCGGCTACTCCTCCCTCGCCGCGCTCTCCGCCGCCTCCCCTCCCCGCCTCGCCCGAGATTTGAGCATTGAGGTACATGAGGCTGAAGAAATCCTCAAGGTTGCCGTGGGCGCCAACAAGTCCAAGGGAGCAGATGGGCCTAGCACCAGCAGTGTTCTCAAAGGTGTGCAAAATGCATGGGATATGCTATCTGATGAGCAATCACGGAGGCACATCAATACTGGATCTGCTGACCTCAACAACATCCTTGGTGGAGGGATTCACTGTAAAGAGGTTACTGAGATT-GGTGGTGTCCCAGGAGTCGGTAAAACTCAACTGGGGATTCAACTAGCAATCAATGTTCAAATTCCAGTGGAGTATGGTGGACTTGGTGGGAAAGCTGTTTATATAGATACAGAGGGAAGTTTCATGGTTGAACGTGTCTACCAAATTGCTGAAGGGTGCATCAGTGATATACTGGAGTACTTTCCACACTGCCATGACAAGGCTCCAGCCGGACAAGAAAAACTGAAGCCTGAGAGTTTCCTGGCTGACATCTACTACTTTCGAATATGCAGCTATACTGAACAAATTGCAGTCATAAACTATCTGGAAAAGTTTCTTGGGGAGCATAAAGATGTAAGAATAGTTATTATTGACAGCGTTACTTTCCACTTTCGGCAAGATTTTGATGATATGGCACTAAGGACTAGAGTGCTTAGTGGATTATCATTGAAGTTGATGAAACTTTCAAAGGCATATAACTTGGCGGTTGTCTTGTTGAACCAAGTTACTACTAAATTCACAGAAGGATCATTTCAGTTAACTCTTGCTCTAGGTGACAGTTGGTCCCACTCATGCACCAATCGACTAATTCTGTATTGGAACGGCAATGAGCGGTATGGATTCCTGGACAAGTCCCCTTCACTACCAGTAGCATCAGCACCATATGCAGTGACAGTTAAAGGGGTGAGAGATGCTGTGAATTCAAACAGCAAGCGAGTCCGGGTAATGTAGCAATCTTGGTGTTGAACCCTTTTACCATTAGTAGCCATCGACCGTCATGTCTAAACTGTGCAGCATTCTCTGATCTTTCTAACTAAGCTGATTGAAATTTGGATCATGTGTAACGCTGTCTTATTTGCTTCTGCCGGTAGCTAATTGTACAAAGGTAACTGAAGCAAAAGAGGGTGCTTCATTTTGGTTGATCCAAACATGTAACAGCTAACAAGTACTCTACAGGCCTGTTACAAACTTACAAACAGAATGATGCCGGATGTGTTCCGATGCCAGGAAATTATCC] [+] EMBL AK060971 [AACCATCGCCAGTCGCCGCCCGCGCGGAGCATCCATCCTCAACCTCCCAAGTTCGGCGCCCAATCCCGGCGATGGAGATCGCCGACCTCCCCATCGCCACCTCCCACCGCGCCAACCTCCTCGCCGCCGGCTACTCCTCCCTCGCCGCGCTCTCCGCCGCCTCCCCTCCCCGCCTCGCCCGAGATTTGAGCATTGAGGTACATGAGGCTGAAGAAATCCTCAAGGTTGCCGTGGGCGCCAACAAGTCCAAGGGAGCAGATGGGCCTAGCACCAGCAGTGTTCTCAAAGGTGTGCAAAATGCATGGGATATGCTATCTGATGAGCAATCACGGAGGCACATCAATACTGGATCTGCTGACCTCAACAACATCCTTGGTGGAGGGATTCACTGTAAAGAGGTTACTGAGATT GGTGGTGTCCCAGGAGTCGGTAAAACTCAACTGGGGATTCAACTAGCAATCAATGTTCAAATTCCAGTGGAGTATGGTGGACTTGGTGGGAAAGCTGTTTATATAGATACAGAGGGAAGTTTCATGGTTGAACGTGTCTACCAAATTGCTGAAGGGTGCATCAGTGATATACTGGAGTACTTTCCACACTGCCATGACAAGGCTCCAGCCGGACAAGAAAAACTGAAGCCTGAGAGTTTCCTGGCTGACATCTACTACTTTCGAATATGCAGCTATACTGAACAAATTGCAGTCATAAACTATCTGGAAAAGTTTCTTGGGGAGCATAAAGATGTAAGAATAGTTATTATTGACAGCGTTACTTTCCACTTTCGGCAAGATTTTGATGATATGGCACTAAGGACTAGAGTGCTTAGTGGATTATCATTGAAGTTGATGAAACTTTCAAAGGCATATAACTTGGCGGTTGTCTTGTTGAACCAAGTTACTACTAAATTCACAGAAGGATCATTTCAGTTAACTCTTGCTCTAGGTGACAGTTGGTCCCACTCATGCACCAATCGACTAATTCTGTATTGGAACGGCAATGAGCGGTATGGATTCCTGGACAAGTCCCCTTCACTACCAGTAGCATCAGCACCATATGCAGTGACAGTTAAAGGGGTGAGAGATGCTGTGAATTCAAACAGCAAGCGAGTCCGGGTAATGTAGCAATCTTGGTGTTGAACCCTTTTACCATTAGTAGCCATCGACCGTCATGTCTAAACTGTGCAGCATTCTCTGATCTTTCTAACTAAGCTGATTGAAATTTGGATCATGTGTAACGCTGTCTTATTTGCTTCTGCCGGTAGCTAATTGTACAAAGGTAACTGAAGCAAAAGAGGGTGCTTCATTTTGGTTGATCCAAACATGTAACAGCTAACAAGTACTCTACAGGCCTGTTACAAACTTACAAACAGAATGATGCCGGATGTGTTCCGATGCCAGGAAATTATCC] [+] EMBL CF282180 [ TCCATCCTCAACCTCCCAAGTTCGGCGCCCAATCCCGGCGATGGAGATCGCCGACCTCCCCATCGCCACCTCCCACCGCGCCAACCTCCTCGCCGCCGGCTACTCCTCCCTCGCCGCGCTCTCCGCCGCCTCCCCTCCCCGCCTCGCCCGAGATTTGAGCATTGAGGTACATGAGGCTGAAGAAATCCTCAAGGTTGCCGTGGGCGCCAACAAGTCCAAGGGAGCAGATGGGCCTAGCACCAGCAGTGTTCTCAAAGGTGTGCAAAATGCATGGGATATGCTATCTGATGAGCAATCACGGAGGCACATCAATACTGGATCTGCTGACCTCAACAACATCCTTGGTGGAGGGATTCACTGTAAAGAGGTTACTGAGATTNGGTGGTGTCCCAGGAGTCGGTAAAACTCAACTGGGGATTCAACTAGCAATCAATGTTCAAA ] [+] EMBL CF196531 [ GGCGCCAACAAGTCCAAGGGAGCAGATGGGCCTAGCACCAGCAGTGTTCTCAAAGGTGTGCAAAATGCATGGGATATGCTATCTGATGAGCAATCACGGAGGCACATCAATACTGGATCTGCTGACCTCAACAACATCCTTGGTGGAGGGATTCACTGTAAAGAGGTTACTGAGATT GGTGGTGTCCCAGGAGTCGGTAAAACTCAACTGGGGATTCAACTAGCAATCAATGTTCAAATTCCAGTGGAGTATGGTGGACTTGGTGGGAAAGCTGTTTATATAGATACAGAGGGAAGTTTCATGGTTGAACGTGTCTACCAAATTGCTGAAGGGTGCATCAGTGATATACTGGAGTACTTTCCACACTGCCATGACAAGGCTCCAGCCGGACAAGAAAAACTGAAGCCTGAGAGTTTCCTGGCTGACATCTACTACTTTCGAATATGCAGCTATACTGAACAAATTGCAGTCATAAACTATCTGGAAAAGTTTCTTGGGGNNNATAAAGATGTANNNATAGTTATTATTGACAGCGTTACTTTCCACTTTCGGCANNNNNTTGATGATATGGCACTnnnnnnnnn ] consensusID : consensus_7883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1323 fasta sequence [TCAACCTCCCAAGTTCGGCGCCCAATCCCGGCGATGGAGATCGCCGACCTCCCCATCGCCACCTCCCACCGCGCCAACCTCCTCGCCGCCGGCTACTCCTCCCTCGCCGCGCTCTCCGCCGCCTCCCCTCCCCGCCTCGCCCGAGATTTGAGCATTGAGGTACATGAGGCTGAAGAAATCCTCAAGGTTGCCGTGGGCGCCAACAAGTCCAAGGGAGCAGATGGGCCTAGCACCAGCAGTGTTCTCAAAGGTGTGCAAAATGCATGGGATATGCTATCTGATGAGCAATCACGGAGGCACATCAATACTGGATCTGCTGACCTCAACAACATCCTTGGTGGAGGGATTCACTGTAAAGAGGTTACTGAGATTGTTTGATTCAGGTGGTGTCCCAGGAGTCGGTAAAACTCAACTGGGGATTCAACTAGCAATCAATGTTCAAATTCCAGTGGAGTATGGTGGACTTGGTGGGAAAGCTGTTTATATAGATACAGAGGGAAGTTTCATGGTTGAACGTGTCTACCAAATTGCTGAAGGGTGCATCAGTGATATACTGGAGTACTTTCCACACTGCCATGACAAGGCTCCAGCCGGACAAGAAAAACTGAAGCCTGAGAGTTTCCTGGCTGACATCTACTACTTTCGAATATGCAGCTATACTGAACAAATTGCAGTCATAAACTATCTGGAAAAGTTTCTTGGGGAGCATAAAGATGTAAGAATAGTTATTATTGACAGCGTTACTTTCCACTTTCGGCAAGATTTTGATGATATGGCACTAAGGACTAGAGTGCTTAGTGGATTATCATTGAAGTTGATGAAACTTTCAAAGGCATATAACTTGGCGGTTGTCTTGTTGAACCAAGTTACTACTAAATTCACAGAAGGATCATTTCAGTTAACTCTTGCTCTAGGTGACAGTTGGTCCCACTCATGCACCAATCGACTAATTCTGTATTGGAACGGCAATGAGCGGTATGGATTCCTGGACAAGTCCCCTTCACTACCAGTAGCATCAGCACCATATGCAGTGACAGTTAAAGGGGTGAGAGATGCTGTGAATTCAAACAGCAAGCGAGTCCGGGTAATGTAGCAATCTTGGTGTTGAACCCTTTTACCATTAGTAGCCATCGACCGTCATGTCTAAACTGTGCAGCATTCTCTGATCTTTCTAACTAAGCTGATTGAAATTTGGATCATGTGTAACGCTGTCTTATTTGCTTCTGCCGGTAGCTAATTGTACAAAGGTAACTGAAGCAAAAGAGGGTGCTTCATTTTGGTTGATCCAAACATGTAACAGCTAACAAGTACTCTACAGGCCTG] [+] EMBL AK068701 [TCAACCTCCCAAGTTCGGCGCCCAATCCCGGCGATGGAGATCGCCGACCTCCCCATCGCCACCTCCCACCGCGCCAACCTCCTCGCCGCCGGCTACTCCTCCCTCGCCGCGCTCTCCGCCGCCTCCCCTCCCCGCCTCGCCCGAGATTTGAGCATTGAGGTACATGAGGCTGAAGAAATCCTCAAGGTTGCCGTGGGCGCCAACAAGTCCAAGGGAGCAGATGGGCCTAGCACCAGCAGTGTTCTCAAAGGTGTGCAAAATGCATGGGATATGCTATCTGATGAGCAATCACGGAGGCACATCAATACTGGATCTGCTGACCTCAACAACATCCTTGGTGGAGGGATTCACTGTAAAGAGGTTACTGAGATTGTTTGATTCAGGTGGTGTCCCAGGAGTCGGTAAAACTCAACTGGGGATTCAACTAGCAATCAATGTTCAAATTCCAGTGGAGTATGGTGGACTTGGTGGGAAAGCTGTTTATATAGATACAGAGGGAAGTTTCATGGTTGAACGTGTCTACCAAATTGCTGAAGGGTGCATCAGTGATATACTGGAGTACTTTCCACACTGCCATGACAAGGCTCCAGCCGGACAAGAAAAACTGAAGCCTGAGAGTTTCCTGGCTGACATCTACTACTTTCGAATATGCAGCTATACTGAACAAATTGCAGTCATAAACTATCTGGAAAAGTTTCTTGGGGAGCATAAAGATGTAAGAATAGTTATTATTGACAGCGTTACTTTCCACTTTCGGCAAGATTTTGATGATATGGCACTAAGGACTAGAGTGCTTAGTGGATTATCATTGAAGTTGATGAAACTTTCAAAGGCATATAACTTGGCGGTTGTCTTGTTGAACCAAGTTACTACTAAATTCACAGAAGGATCATTTCAGTTAACTCTTGCTCTAGGTGACAGTTGGTCCCACTCATGCACCAATCGACTAATTCTGTATTGGAACGGCAATGAGCGGTATGGATTCCTGGACAAGTCCCCTTCACTACCAGTAGCATCAGCACCATATGCAGTGACAGTTAAAGGGGTGAGAGATGCTGTGAATTCAAACAGCAAGCGAGTCCGGGTAATGTAGCAATCTTGGTGTTGAACCCTTTTACCATTAGTAGCCATCGACCGTCATGTCTAAACTGTGCAGCATTCTCTGATCTTTCTAACTAAGCTGATTGAAATTTGGATCATGTGTAACGCTGTCTTATTTGCTTCTGCCGGTAGCTAATTGTACAAAGGTAACTGAAGCAAAAGAGGGTGCTTCATTTTGGTTGATCCAAACATGTAACAGCTAACAAGTACTCTACAGGCCTG] [-] EMBL CF282181 [ AAAGATGTAAGAATAGTTATTATTGACAGCGTTACTTTCCACTTTCGGCAAGATTTTGATGATATGGCACTAAGGACTAGAGTGCTTAGTGGATTATCATTGAAGTTGATGAAACTTTCAAAGGCATATAACTTGGCGGTTGTCTTGTTGAACCAAGTTACTACTAAATTCACAGAAGGATCATTTCAGTTAACTCTTGCTCTAGGTGACAGTTGGTCCCACTCATGCACCAATCGACTAATTCTGTATTGGAACGGCAATGAGCGGTATGGATTCCTGGACAAGTCCCCTTCAATACCAGTAGCATCAGCACCATATGCAGTGACAGTTAAAGGGGTAAAAAATGCTGTGAATTCAAACAGCAAGCGAGTCCGGGTAATGTAGCAATCTTGGTGTTGAACCCTTTTACCATTAGTAGCCATCGACCGTCATGTCTAAACTGTGCAGCATTCTCTGATCTTTCTAACTAAGCTGATTGAAATTTGGATCAaaaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7883#0 AACCATCGCCAGTCGCCGCCCGCGCGGAGCATCCATCCTCAACCTCCCAAGTTCGGCGCC 60 consensus_7883#1 --------------------------------------TCAACCTCCCAAGTTCGGCGCC 22 ********************** consensus_7883#0 CAATCCCGGCGATGGAGATCGCCGACCTCCCCATCGCCACCTCCCACCGCGCCAACCTCC 120 consensus_7883#1 CAATCCCGGCGATGGAGATCGCCGACCTCCCCATCGCCACCTCCCACCGCGCCAACCTCC 82 ************************************************************ consensus_7883#0 TCGCCGCCGGCTACTCCTCCCTCGCCGCGCTCTCCGCCGCCTCCCCTCCCCGCCTCGCCC 180 consensus_7883#1 TCGCCGCCGGCTACTCCTCCCTCGCCGCGCTCTCCGCCGCCTCCCCTCCCCGCCTCGCCC 142 ************************************************************ consensus_7883#0 GAGATTTGAGCATTGAGGTACATGAGGCTGAAGAAATCCTCAAGGTTGCCGTGGGCGCCA 240 consensus_7883#1 GAGATTTGAGCATTGAGGTACATGAGGCTGAAGAAATCCTCAAGGTTGCCGTGGGCGCCA 202 ************************************************************ consensus_7883#0 ACAAGTCCAAGGGAGCAGATGGGCCTAGCACCAGCAGTGTTCTCAAAGGTGTGCAAAATG 300 consensus_7883#1 ACAAGTCCAAGGGAGCAGATGGGCCTAGCACCAGCAGTGTTCTCAAAGGTGTGCAAAATG 262 ************************************************************ consensus_7883#0 CATGGGATATGCTATCTGATGAGCAATCACGGAGGCACATCAATACTGGATCTGCTGACC 360 consensus_7883#1 CATGGGATATGCTATCTGATGAGCAATCACGGAGGCACATCAATACTGGATCTGCTGACC 322 ************************************************************ consensus_7883#0 TCAACAACATCCTTGGTGGAGGGATTCACTGTAAAGAGGTTACTGAGATTG--------- 411 consensus_7883#1 TCAACAACATCCTTGGTGGAGGGATTCACTGTAAAGAGGTTACTGAGATTGTTTGATTCA 382 *************************************************** consensus_7883#0 -GTGGTGTCCCAGGAGTCGGTAAAACTCAACTGGGGATTCAACTAGCAATCAATGTTCAA 470 consensus_7883#1 GGTGGTGTCCCAGGAGTCGGTAAAACTCAACTGGGGATTCAACTAGCAATCAATGTTCAA 442 *********************************************************** consensus_7883#0 ATTCCAGTGGAGTATGGTGGACTTGGTGGGAAAGCTGTTTATATAGATACAGAGGGAAGT 530 consensus_7883#1 ATTCCAGTGGAGTATGGTGGACTTGGTGGGAAAGCTGTTTATATAGATACAGAGGGAAGT 502 ************************************************************ consensus_7883#0 TTCATGGTTGAACGTGTCTACCAAATTGCTGAAGGGTGCATCAGTGATATACTGGAGTAC 590 consensus_7883#1 TTCATGGTTGAACGTGTCTACCAAATTGCTGAAGGGTGCATCAGTGATATACTGGAGTAC 562 ************************************************************ consensus_7883#0 TTTCCACACTGCCATGACAAGGCTCCAGCCGGACAAGAAAAACTGAAGCCTGAGAGTTTC 650 consensus_7883#1 TTTCCACACTGCCATGACAAGGCTCCAGCCGGACAAGAAAAACTGAAGCCTGAGAGTTTC 622 ************************************************************ consensus_7883#0 CTGGCTGACATCTACTACTTTCGAATATGCAGCTATACTGAACAAATTGCAGTCATAAAC 710 consensus_7883#1 CTGGCTGACATCTACTACTTTCGAATATGCAGCTATACTGAACAAATTGCAGTCATAAAC 682 ************************************************************ consensus_7883#0 TATCTGGAAAAGTTTCTTGGGGAGCATAAAGATGTAAGAATAGTTATTATTGACAGCGTT 770 consensus_7883#1 TATCTGGAAAAGTTTCTTGGGGAGCATAAAGATGTAAGAATAGTTATTATTGACAGCGTT 742 ************************************************************ consensus_7883#0 ACTTTCCACTTTCGGCAAGATTTTGATGATATGGCACTAAGGACTAGAGTGCTTAGTGGA 830 consensus_7883#1 ACTTTCCACTTTCGGCAAGATTTTGATGATATGGCACTAAGGACTAGAGTGCTTAGTGGA 802 ************************************************************ consensus_7883#0 TTATCATTGAAGTTGATGAAACTTTCAAAGGCATATAACTTGGCGGTTGTCTTGTTGAAC 890 consensus_7883#1 TTATCATTGAAGTTGATGAAACTTTCAAAGGCATATAACTTGGCGGTTGTCTTGTTGAAC 862 ************************************************************ consensus_7883#0 CAAGTTACTACTAAATTCACAGAAGGATCATTTCAGTTAACTCTTGCTCTAGGTGACAGT 950 consensus_7883#1 CAAGTTACTACTAAATTCACAGAAGGATCATTTCAGTTAACTCTTGCTCTAGGTGACAGT 922 ************************************************************ consensus_7883#0 TGGTCCCACTCATGCACCAATCGACTAATTCTGTATTGGAACGGCAATGAGCGGTATGGA 1010 consensus_7883#1 TGGTCCCACTCATGCACCAATCGACTAATTCTGTATTGGAACGGCAATGAGCGGTATGGA 982 ************************************************************ consensus_7883#0 TTCCTGGACAAGTCCCCTTCACTACCAGTAGCATCAGCACCATATGCAGTGACAGTTAAA 1070 consensus_7883#1 TTCCTGGACAAGTCCCCTTCACTACCAGTAGCATCAGCACCATATGCAGTGACAGTTAAA 1042 ************************************************************ consensus_7883#0 GGGGTGAGAGATGCTGTGAATTCAAACAGCAAGCGAGTCCGGGTAATGTAGCAATCTTGG 1130 consensus_7883#1 GGGGTGAGAGATGCTGTGAATTCAAACAGCAAGCGAGTCCGGGTAATGTAGCAATCTTGG 1102 ************************************************************ consensus_7883#0 TGTTGAACCCTTTTACCATTAGTAGCCATCGACCGTCATGTCTAAACTGTGCAGCATTCT 1190 consensus_7883#1 TGTTGAACCCTTTTACCATTAGTAGCCATCGACCGTCATGTCTAAACTGTGCAGCATTCT 1162 ************************************************************ consensus_7883#0 CTGATCTTTCTAACTAAGCTGATTGAAATTTGGATCATGTGTAACGCTGTCTTATTTGCT 1250 consensus_7883#1 CTGATCTTTCTAACTAAGCTGATTGAAATTTGGATCATGTGTAACGCTGTCTTATTTGCT 1222 ************************************************************ consensus_7883#0 TCTGCCGGTAGCTAATTGTACAAAGGTAACTGAAGCAAAAGAGGGTGCTTCATTTTGGTT 1310 consensus_7883#1 TCTGCCGGTAGCTAATTGTACAAAGGTAACTGAAGCAAAAGAGGGTGCTTCATTTTGGTT 1282 ************************************************************ consensus_7883#0 GATCCAAACATGTAACAGCTAACAAGTACTCTACAGGCCTGTTACAAACTTACAAACAGA 1370 consensus_7883#1 GATCCAAACATGTAACAGCTAACAAGTACTCTACAGGCCTG------------------- 1323 ***************************************** consensus_7883#0 ATGATGCCGGATGTGTTCCGATGCCAGGAAATTATCC 1407 consensus_7883#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||