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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1407 fasta sequence
[AACCATCGCCAGTCGCCGCCCGCGCGGAGCATCCATCCTCAACCTCCCAAGTTCGGCGCCCAATCCCGGCGATGGAGATCGCCGACCTCCCCATCGCCACCTCCCACCGCGCCAACCTCCTCGCCGCCGGCTACTCCTCCCTCGCCGCGCTCTCCGCCGCCTCCCCTCCCCGCCTCGCCCGAGATTTGAGCATTGAGGTACATGAGGCTGAAGAAATCCTCAAGGTTGCCGTGGGCGCCAACAAGTCCAAGGGAGCAGATGGGCCTAGCACCAGCAGTGTTCTCAAAGGTGTGCAAAATGCATGGGATATGCTATCTGATGAGCAATCACGGAGGCACATCAATACTGGATCTGCTGACCTCAACAACATCCTTGGTGGAGGGATTCACTGTAAAGAGGTTACTGAGATT-GGTGGTGTCCCAGGAGTCGGTAAAACTCAACTGGGGATTCAACTAGCAATCAATGTTCAAATTCCAGTGGAGTATGGTGGACTTGGTGGGAAAGCTGTTTATATAGATACAGAGGGAAGTTTCATGGTTGAACGTGTCTACCAAATTGCTGAAGGGTGCATCAGTGATATACTGGAGTACTTTCCACACTGCCATGACAAGGCTCCAGCCGGACAAGAAAAACTGAAGCCTGAGAGTTTCCTGGCTGACATCTACTACTTTCGAATATGCAGCTATACTGAACAAATTGCAGTCATAAACTATCTGGAAAAGTTTCTTGGGGAGCATAAAGATGTAAGAATAGTTATTATTGACAGCGTTACTTTCCACTTTCGGCAAGATTTTGATGATATGGCACTAAGGACTAGAGTGCTTAGTGGATTATCATTGAAGTTGATGAAACTTTCAAAGGCATATAACTTGGCGGTTGTCTTGTTGAACCAAGTTACTACTAAATTCACAGAAGGATCATTTCAGTTAACTCTTGCTCTAGGTGACAGTTGGTCCCACTCATGCACCAATCGACTAATTCTGTATTGGAACGGCAATGAGCGGTATGGATTCCTGGACAAGTCCCCTTCACTACCAGTAGCATCAGCACCATATGCAGTGACAGTTAAAGGGGTGAGAGATGCTGTGAATTCAAACAGCAAGCGAGTCCGGGTAATGTAGCAATCTTGGTGTTGAACCCTTTTACCATTAGTAGCCATCGACCGTCATGTCTAAACTGTGCAGCATTCTCTGATCTTTCTAACTAAGCTGATTGAAATTTGGATCATGTGTAACGCTGTCTTATTTGCTTCTGCCGGTAGCTAATTGTACAAAGGTAACTGAAGCAAAAGAGGGTGCTTCATTTTGGTTGATCCAAACATGTAACAGCTAACAAGTACTCTACAGGCCTGTTACAAACTTACAAACAGAATGATGCCGGATGTGTTCCGATGCCAGGAAATTATCC]
[+] EMBL AK060971 [AACCATCGCCAGTCGCCGCCCGCGCGGAGCATCCATCCTCAACCTCCCAAGTTCGGCGCCCAATCCCGGCGATGGAGATCGCCGACCTCCCCATCGCCACCTCCCACCGCGCCAACCTCCTCGCCGCCGGCTACTCCTCCCTCGCCGCGCTCTCCGCCGCCTCCCCTCCCCGCCTCGCCCGAGATTTGAGCATTGAGGTACATGAGGCTGAAGAAATCCTCAAGGTTGCCGTGGGCGCCAACAAGTCCAAGGGAGCAGATGGGCCTAGCACCAGCAGTGTTCTCAAAGGTGTGCAAAATGCATGGGATATGCTATCTGATGAGCAATCACGGAGGCACATCAATACTGGATCTGCTGACCTCAACAACATCCTTGGTGGAGGGATTCACTGTAAAGAGGTTACTGAGATT GGTGGTGTCCCAGGAGTCGGTAAAACTCAACTGGGGATTCAACTAGCAATCAATGTTCAAATTCCAGTGGAGTATGGTGGACTTGGTGGGAAAGCTGTTTATATAGATACAGAGGGAAGTTTCATGGTTGAACGTGTCTACCAAATTGCTGAAGGGTGCATCAGTGATATACTGGAGTACTTTCCACACTGCCATGACAAGGCTCCAGCCGGACAAGAAAAACTGAAGCCTGAGAGTTTCCTGGCTGACATCTACTACTTTCGAATATGCAGCTATACTGAACAAATTGCAGTCATAAACTATCTGGAAAAGTTTCTTGGGGAGCATAAAGATGTAAGAATAGTTATTATTGACAGCGTTACTTTCCACTTTCGGCAAGATTTTGATGATATGGCACTAAGGACTAGAGTGCTTAGTGGATTATCATTGAAGTTGATGAAACTTTCAAAGGCATATAACTTGGCGGTTGTCTTGTTGAACCAAGTTACTACTAAATTCACAGAAGGATCATTTCAGTTAACTCTTGCTCTAGGTGACAGTTGGTCCCACTCATGCACCAATCGACTAATTCTGTATTGGAACGGCAATGAGCGGTATGGATTCCTGGACAAGTCCCCTTCACTACCAGTAGCATCAGCACCATATGCAGTGACAGTTAAAGGGGTGAGAGATGCTGTGAATTCAAACAGCAAGCGAGTCCGGGTAATGTAGCAATCTTGGTGTTGAACCCTTTTACCATTAGTAGCCATCGACCGTCATGTCTAAACTGTGCAGCATTCTCTGATCTTTCTAACTAAGCTGATTGAAATTTGGATCATGTGTAACGCTGTCTTATTTGCTTCTGCCGGTAGCTAATTGTACAAAGGTAACTGAAGCAAAAGAGGGTGCTTCATTTTGGTTGATCCAAACATGTAACAGCTAACAAGTACTCTACAGGCCTGTTACAAACTTACAAACAGAATGATGCCGGATGTGTTCCGATGCCAGGAAATTATCC]
[+] EMBL CF282180 [ TCCATCCTCAACCTCCCAAGTTCGGCGCCCAATCCCGGCGATGGAGATCGCCGACCTCCCCATCGCCACCTCCCACCGCGCCAACCTCCTCGCCGCCGGCTACTCCTCCCTCGCCGCGCTCTCCGCCGCCTCCCCTCCCCGCCTCGCCCGAGATTTGAGCATTGAGGTACATGAGGCTGAAGAAATCCTCAAGGTTGCCGTGGGCGCCAACAAGTCCAAGGGAGCAGATGGGCCTAGCACCAGCAGTGTTCTCAAAGGTGTGCAAAATGCATGGGATATGCTATCTGATGAGCAATCACGGAGGCACATCAATACTGGATCTGCTGACCTCAACAACATCCTTGGTGGAGGGATTCACTGTAAAGAGGTTACTGAGATTNGGTGGTGTCCCAGGAGTCGGTAAAACTCAACTGGGGATTCAACTAGCAATCAATGTTCAAA ]
[+] EMBL CF196531 [ GGCGCCAACAAGTCCAAGGGAGCAGATGGGCCTAGCACCAGCAGTGTTCTCAAAGGTGTGCAAAATGCATGGGATATGCTATCTGATGAGCAATCACGGAGGCACATCAATACTGGATCTGCTGACCTCAACAACATCCTTGGTGGAGGGATTCACTGTAAAGAGGTTACTGAGATT GGTGGTGTCCCAGGAGTCGGTAAAACTCAACTGGGGATTCAACTAGCAATCAATGTTCAAATTCCAGTGGAGTATGGTGGACTTGGTGGGAAAGCTGTTTATATAGATACAGAGGGAAGTTTCATGGTTGAACGTGTCTACCAAATTGCTGAAGGGTGCATCAGTGATATACTGGAGTACTTTCCACACTGCCATGACAAGGCTCCAGCCGGACAAGAAAAACTGAAGCCTGAGAGTTTCCTGGCTGACATCTACTACTTTCGAATATGCAGCTATACTGAACAAATTGCAGTCATAAACTATCTGGAAAAGTTTCTTGGGGNNNATAAAGATGTANNNATAGTTATTATTGACAGCGTTACTTTCCACTTTCGGCANNNNNTTGATGATATGGCACTnnnnnnnnn ]
consensusID : consensus_7883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1323 fasta sequence
[TCAACCTCCCAAGTTCGGCGCCCAATCCCGGCGATGGAGATCGCCGACCTCCCCATCGCCACCTCCCACCGCGCCAACCTCCTCGCCGCCGGCTACTCCTCCCTCGCCGCGCTCTCCGCCGCCTCCCCTCCCCGCCTCGCCCGAGATTTGAGCATTGAGGTACATGAGGCTGAAGAAATCCTCAAGGTTGCCGTGGGCGCCAACAAGTCCAAGGGAGCAGATGGGCCTAGCACCAGCAGTGTTCTCAAAGGTGTGCAAAATGCATGGGATATGCTATCTGATGAGCAATCACGGAGGCACATCAATACTGGATCTGCTGACCTCAACAACATCCTTGGTGGAGGGATTCACTGTAAAGAGGTTACTGAGATTGTTTGATTCAGGTGGTGTCCCAGGAGTCGGTAAAACTCAACTGGGGATTCAACTAGCAATCAATGTTCAAATTCCAGTGGAGTATGGTGGACTTGGTGGGAAAGCTGTTTATATAGATACAGAGGGAAGTTTCATGGTTGAACGTGTCTACCAAATTGCTGAAGGGTGCATCAGTGATATACTGGAGTACTTTCCACACTGCCATGACAAGGCTCCAGCCGGACAAGAAAAACTGAAGCCTGAGAGTTTCCTGGCTGACATCTACTACTTTCGAATATGCAGCTATACTGAACAAATTGCAGTCATAAACTATCTGGAAAAGTTTCTTGGGGAGCATAAAGATGTAAGAATAGTTATTATTGACAGCGTTACTTTCCACTTTCGGCAAGATTTTGATGATATGGCACTAAGGACTAGAGTGCTTAGTGGATTATCATTGAAGTTGATGAAACTTTCAAAGGCATATAACTTGGCGGTTGTCTTGTTGAACCAAGTTACTACTAAATTCACAGAAGGATCATTTCAGTTAACTCTTGCTCTAGGTGACAGTTGGTCCCACTCATGCACCAATCGACTAATTCTGTATTGGAACGGCAATGAGCGGTATGGATTCCTGGACAAGTCCCCTTCACTACCAGTAGCATCAGCACCATATGCAGTGACAGTTAAAGGGGTGAGAGATGCTGTGAATTCAAACAGCAAGCGAGTCCGGGTAATGTAGCAATCTTGGTGTTGAACCCTTTTACCATTAGTAGCCATCGACCGTCATGTCTAAACTGTGCAGCATTCTCTGATCTTTCTAACTAAGCTGATTGAAATTTGGATCATGTGTAACGCTGTCTTATTTGCTTCTGCCGGTAGCTAATTGTACAAAGGTAACTGAAGCAAAAGAGGGTGCTTCATTTTGGTTGATCCAAACATGTAACAGCTAACAAGTACTCTACAGGCCTG]
[+] EMBL AK068701 [TCAACCTCCCAAGTTCGGCGCCCAATCCCGGCGATGGAGATCGCCGACCTCCCCATCGCCACCTCCCACCGCGCCAACCTCCTCGCCGCCGGCTACTCCTCCCTCGCCGCGCTCTCCGCCGCCTCCCCTCCCCGCCTCGCCCGAGATTTGAGCATTGAGGTACATGAGGCTGAAGAAATCCTCAAGGTTGCCGTGGGCGCCAACAAGTCCAAGGGAGCAGATGGGCCTAGCACCAGCAGTGTTCTCAAAGGTGTGCAAAATGCATGGGATATGCTATCTGATGAGCAATCACGGAGGCACATCAATACTGGATCTGCTGACCTCAACAACATCCTTGGTGGAGGGATTCACTGTAAAGAGGTTACTGAGATTGTTTGATTCAGGTGGTGTCCCAGGAGTCGGTAAAACTCAACTGGGGATTCAACTAGCAATCAATGTTCAAATTCCAGTGGAGTATGGTGGACTTGGTGGGAAAGCTGTTTATATAGATACAGAGGGAAGTTTCATGGTTGAACGTGTCTACCAAATTGCTGAAGGGTGCATCAGTGATATACTGGAGTACTTTCCACACTGCCATGACAAGGCTCCAGCCGGACAAGAAAAACTGAAGCCTGAGAGTTTCCTGGCTGACATCTACTACTTTCGAATATGCAGCTATACTGAACAAATTGCAGTCATAAACTATCTGGAAAAGTTTCTTGGGGAGCATAAAGATGTAAGAATAGTTATTATTGACAGCGTTACTTTCCACTTTCGGCAAGATTTTGATGATATGGCACTAAGGACTAGAGTGCTTAGTGGATTATCATTGAAGTTGATGAAACTTTCAAAGGCATATAACTTGGCGGTTGTCTTGTTGAACCAAGTTACTACTAAATTCACAGAAGGATCATTTCAGTTAACTCTTGCTCTAGGTGACAGTTGGTCCCACTCATGCACCAATCGACTAATTCTGTATTGGAACGGCAATGAGCGGTATGGATTCCTGGACAAGTCCCCTTCACTACCAGTAGCATCAGCACCATATGCAGTGACAGTTAAAGGGGTGAGAGATGCTGTGAATTCAAACAGCAAGCGAGTCCGGGTAATGTAGCAATCTTGGTGTTGAACCCTTTTACCATTAGTAGCCATCGACCGTCATGTCTAAACTGTGCAGCATTCTCTGATCTTTCTAACTAAGCTGATTGAAATTTGGATCATGTGTAACGCTGTCTTATTTGCTTCTGCCGGTAGCTAATTGTACAAAGGTAACTGAAGCAAAAGAGGGTGCTTCATTTTGGTTGATCCAAACATGTAACAGCTAACAAGTACTCTACAGGCCTG]
[-] EMBL CF282181 [ AAAGATGTAAGAATAGTTATTATTGACAGCGTTACTTTCCACTTTCGGCAAGATTTTGATGATATGGCACTAAGGACTAGAGTGCTTAGTGGATTATCATTGAAGTTGATGAAACTTTCAAAGGCATATAACTTGGCGGTTGTCTTGTTGAACCAAGTTACTACTAAATTCACAGAAGGATCATTTCAGTTAACTCTTGCTCTAGGTGACAGTTGGTCCCACTCATGCACCAATCGACTAATTCTGTATTGGAACGGCAATGAGCGGTATGGATTCCTGGACAAGTCCCCTTCAATACCAGTAGCATCAGCACCATATGCAGTGACAGTTAAAGGGGTAAAAAATGCTGTGAATTCAAACAGCAAGCGAGTCCGGGTAATGTAGCAATCTTGGTGTTGAACCCTTTTACCATTAGTAGCCATCGACCGTCATGTCTAAACTGTGCAGCATTCTCTGATCTTTCTAACTAAGCTGATTGAAATTTGGATCAaaaaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7883#0 AACCATCGCCAGTCGCCGCCCGCGCGGAGCATCCATCCTCAACCTCCCAAGTTCGGCGCC 60
consensus_7883#1 --------------------------------------TCAACCTCCCAAGTTCGGCGCC 22
**********************
consensus_7883#0 CAATCCCGGCGATGGAGATCGCCGACCTCCCCATCGCCACCTCCCACCGCGCCAACCTCC 120
consensus_7883#1 CAATCCCGGCGATGGAGATCGCCGACCTCCCCATCGCCACCTCCCACCGCGCCAACCTCC 82
************************************************************
consensus_7883#0 TCGCCGCCGGCTACTCCTCCCTCGCCGCGCTCTCCGCCGCCTCCCCTCCCCGCCTCGCCC 180
consensus_7883#1 TCGCCGCCGGCTACTCCTCCCTCGCCGCGCTCTCCGCCGCCTCCCCTCCCCGCCTCGCCC 142
************************************************************
consensus_7883#0 GAGATTTGAGCATTGAGGTACATGAGGCTGAAGAAATCCTCAAGGTTGCCGTGGGCGCCA 240
consensus_7883#1 GAGATTTGAGCATTGAGGTACATGAGGCTGAAGAAATCCTCAAGGTTGCCGTGGGCGCCA 202
************************************************************
consensus_7883#0 ACAAGTCCAAGGGAGCAGATGGGCCTAGCACCAGCAGTGTTCTCAAAGGTGTGCAAAATG 300
consensus_7883#1 ACAAGTCCAAGGGAGCAGATGGGCCTAGCACCAGCAGTGTTCTCAAAGGTGTGCAAAATG 262
************************************************************
consensus_7883#0 CATGGGATATGCTATCTGATGAGCAATCACGGAGGCACATCAATACTGGATCTGCTGACC 360
consensus_7883#1 CATGGGATATGCTATCTGATGAGCAATCACGGAGGCACATCAATACTGGATCTGCTGACC 322
************************************************************
consensus_7883#0 TCAACAACATCCTTGGTGGAGGGATTCACTGTAAAGAGGTTACTGAGATTG--------- 411
consensus_7883#1 TCAACAACATCCTTGGTGGAGGGATTCACTGTAAAGAGGTTACTGAGATTGTTTGATTCA 382
***************************************************
consensus_7883#0 -GTGGTGTCCCAGGAGTCGGTAAAACTCAACTGGGGATTCAACTAGCAATCAATGTTCAA 470
consensus_7883#1 GGTGGTGTCCCAGGAGTCGGTAAAACTCAACTGGGGATTCAACTAGCAATCAATGTTCAA 442
***********************************************************
consensus_7883#0 ATTCCAGTGGAGTATGGTGGACTTGGTGGGAAAGCTGTTTATATAGATACAGAGGGAAGT 530
consensus_7883#1 ATTCCAGTGGAGTATGGTGGACTTGGTGGGAAAGCTGTTTATATAGATACAGAGGGAAGT 502
************************************************************
consensus_7883#0 TTCATGGTTGAACGTGTCTACCAAATTGCTGAAGGGTGCATCAGTGATATACTGGAGTAC 590
consensus_7883#1 TTCATGGTTGAACGTGTCTACCAAATTGCTGAAGGGTGCATCAGTGATATACTGGAGTAC 562
************************************************************
consensus_7883#0 TTTCCACACTGCCATGACAAGGCTCCAGCCGGACAAGAAAAACTGAAGCCTGAGAGTTTC 650
consensus_7883#1 TTTCCACACTGCCATGACAAGGCTCCAGCCGGACAAGAAAAACTGAAGCCTGAGAGTTTC 622
************************************************************
consensus_7883#0 CTGGCTGACATCTACTACTTTCGAATATGCAGCTATACTGAACAAATTGCAGTCATAAAC 710
consensus_7883#1 CTGGCTGACATCTACTACTTTCGAATATGCAGCTATACTGAACAAATTGCAGTCATAAAC 682
************************************************************
consensus_7883#0 TATCTGGAAAAGTTTCTTGGGGAGCATAAAGATGTAAGAATAGTTATTATTGACAGCGTT 770
consensus_7883#1 TATCTGGAAAAGTTTCTTGGGGAGCATAAAGATGTAAGAATAGTTATTATTGACAGCGTT 742
************************************************************
consensus_7883#0 ACTTTCCACTTTCGGCAAGATTTTGATGATATGGCACTAAGGACTAGAGTGCTTAGTGGA 830
consensus_7883#1 ACTTTCCACTTTCGGCAAGATTTTGATGATATGGCACTAAGGACTAGAGTGCTTAGTGGA 802
************************************************************
consensus_7883#0 TTATCATTGAAGTTGATGAAACTTTCAAAGGCATATAACTTGGCGGTTGTCTTGTTGAAC 890
consensus_7883#1 TTATCATTGAAGTTGATGAAACTTTCAAAGGCATATAACTTGGCGGTTGTCTTGTTGAAC 862
************************************************************
consensus_7883#0 CAAGTTACTACTAAATTCACAGAAGGATCATTTCAGTTAACTCTTGCTCTAGGTGACAGT 950
consensus_7883#1 CAAGTTACTACTAAATTCACAGAAGGATCATTTCAGTTAACTCTTGCTCTAGGTGACAGT 922
************************************************************
consensus_7883#0 TGGTCCCACTCATGCACCAATCGACTAATTCTGTATTGGAACGGCAATGAGCGGTATGGA 1010
consensus_7883#1 TGGTCCCACTCATGCACCAATCGACTAATTCTGTATTGGAACGGCAATGAGCGGTATGGA 982
************************************************************
consensus_7883#0 TTCCTGGACAAGTCCCCTTCACTACCAGTAGCATCAGCACCATATGCAGTGACAGTTAAA 1070
consensus_7883#1 TTCCTGGACAAGTCCCCTTCACTACCAGTAGCATCAGCACCATATGCAGTGACAGTTAAA 1042
************************************************************
consensus_7883#0 GGGGTGAGAGATGCTGTGAATTCAAACAGCAAGCGAGTCCGGGTAATGTAGCAATCTTGG 1130
consensus_7883#1 GGGGTGAGAGATGCTGTGAATTCAAACAGCAAGCGAGTCCGGGTAATGTAGCAATCTTGG 1102
************************************************************
consensus_7883#0 TGTTGAACCCTTTTACCATTAGTAGCCATCGACCGTCATGTCTAAACTGTGCAGCATTCT 1190
consensus_7883#1 TGTTGAACCCTTTTACCATTAGTAGCCATCGACCGTCATGTCTAAACTGTGCAGCATTCT 1162
************************************************************
consensus_7883#0 CTGATCTTTCTAACTAAGCTGATTGAAATTTGGATCATGTGTAACGCTGTCTTATTTGCT 1250
consensus_7883#1 CTGATCTTTCTAACTAAGCTGATTGAAATTTGGATCATGTGTAACGCTGTCTTATTTGCT 1222
************************************************************
consensus_7883#0 TCTGCCGGTAGCTAATTGTACAAAGGTAACTGAAGCAAAAGAGGGTGCTTCATTTTGGTT 1310
consensus_7883#1 TCTGCCGGTAGCTAATTGTACAAAGGTAACTGAAGCAAAAGAGGGTGCTTCATTTTGGTT 1282
************************************************************
consensus_7883#0 GATCCAAACATGTAACAGCTAACAAGTACTCTACAGGCCTGTTACAAACTTACAAACAGA 1370
consensus_7883#1 GATCCAAACATGTAACAGCTAACAAGTACTCTACAGGCCTG------------------- 1323
*****************************************
consensus_7883#0 ATGATGCCGGATGTGTTCCGATGCCAGGAAATTATCC 1407
consensus_7883#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||