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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7889#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 879 fasta sequence
[TAAGCGAAAAGATGAGACTCTTGAATTTGCCCCCTTAACGTACACTGGTTAGCAACTGCTCTTTCCGTCTCAATATAAATGTTATATCTACATTAGGTTATATTTATATTGAGATGGAAGGAGTACTACCTGAATCCAAACTCTGATTGATCTCTTCCGTTTTTGATAATACGCAATCGGAGCAGGAGAGAGGTTTTGGATTATGGATAGTACTGGAATGCGGTGATTAGGATGGAAGAAGCATTCTGGACGATACAGGATCGGACATCTGGGCACGATTACTCCTCCTGGAAGTAAAAACCAGCCGTCACGGCCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGAAATGTTTGGTACCCCATTACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTCGGAGAAACTTT--CCCGCCTCCCAGCGGCAAAGCCTCAA-CGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGTCCCAATGGTTGGCGCTTCACTTATCGTGCAGCAATTTGGCAAAGCTCCAATTCTCTTTTTTCTTCAGGTGAGATCTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCTAATCTATCATGCACCTCCGAAAGTTTACTTGGCGTTTCATGTT-TGAACTTCTCTTGATACCATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAA-TGGACCCTTCAGCACCACATCATGCTCCTTTATTAAG-TCTCTAAAAGTTGCATCTGGGACACGACCCATCATTTGGCATACTTTTAGGAACCAATGCAGACCTACAGAGGCATGTGC]
[+] EMBL CB659772 [TAAGCGAAAAGATGAGACTCTTGAATTTGCCCCCTTAACGTACACTGGTTAGCAACTGCTCTTTCCGTCTCAATATAAATGTTATATCTACATTAGGTTATATTTATATTGAGATGGAAGGAGTACTACCTGAATCCAAACTCTGATTGATCTCTTCCGTTTTTGATAATACGCAATCGGAGCAGGAGAGAGGTTTTGGATTATGGATAGTACTGGAATGCGGTGATTAGGATGGAAGAAGCATTCTGGACGATACAGGATCGGACATCTGGGCACGATTACTCCTCCTGGAAGTAAAAACCAGCCGTCACGGCCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGAAATGTTTGGTACCCCATTACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTCGGAGAAACTTT CCCGCCTCCCAGCGGCAAAGCCTCAA CGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGTCCCAATGGTTGGCGCTTCACTTATCGTGCAGCAATTTGGCAAAGCTCCAATTCTCTTTTTTCTTCAGGTGAGATCTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCTAATCTATCATGCACCTCCGAAAGTTTACTTGGCGTTTCATGTT TGAACTTCTCTTGATACCATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAA TGGACCCTTCAGCACCACATCATGCTCCTTTATTAAG TCTCTAAAAGTTGCATCTGGGACACGACCCATCATT ]
[-] EMBL CB659773 [ TATATTGAGATGGAAGGAGTACTACCTGAATCCAAACTCTGATTGATCTCTTCCGTTTTTGATAATACGCAATCGGAGCAGGAGAGAGGTTTTGGATTATGGATAGTACTGGAATGCGGTGATTAGGATGGAAGAAGCATTCTGGACGATACAGGATCGGACATCTGGGCACGATTACTCCTCCTGGAAGTAAAAACCAGCCGTCACGGCCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGAAATGTTTGGTACCCCATTACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTCGGAGAAACTTT CCCGCCTCCCAGCGGCAAAGCCTCAA CGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGTCCCAATGGTTGGCGCTTCACTTATCGTGCAGCAATTTGGCAAAGCTCCAATTCTCTTTTTTCTTCAGGTGAGATCTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCTAATCTATCATGCACCTCCGAAAGTTTACTTGGCGTTTCATGTT TGAACTTCTCTTGATACCATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAA TGGACCCTTCAGCACCACATCATGCTCCTTTATTAAG TCTCTAAAAGTTGCATCTGGGACACGACCCATCATTTGGCATACTTTTAGGAACCAATGCAGACCTACAGAGGCATGTGC]
[-] EMBL BM418529 [ ttttTAAAAACCAGCCGTCATGGCCGATAGNGAGGCTCG TGTCGTTGGCAGGTGCATTACATAGGCTGAAATG TTGGTACCCCATTACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTCGGAGAAACTTTCCCCCGCGTCCCAGCGGCAAAGCCTCAATCGCTCGAGCTGATTCATGTTGGCTGGAGTACTG TTTGGTTGTCCCAATGGTTGGCGCTTCACTTATCGTGCAGCAA TTGGCAAAGCTCCAATTCTCTCTTTTCTTCAGGTGAGATCTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCTAATCTATCATGCACCTCCGAAAGTTTACTTGGCGTTTCATGTTNAGAACTTCTCTTGATACCATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAACTGGACCCTTCAGCACCACATCATGCTCCTTTATTAAGCTCTCTAAAAGTTG ]
consensusID : consensus_7889#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 482 fasta sequence
[TTTTTTTTTTTGGAAGNAAAAACCAGCCGTCACGGNCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGAAATGTTTGGNACCCCATNACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTAGNANAAACTTTCCCGCCTCCCAGCGGNAAAGCCTCAACGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGNNCCAATGGTTGGCGCTTNACTTATCGAGCAGCAATTTGGCAAAGCTCCAATTCTNTTTTTTCTTCAGCGTGAGATACTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCTAATCTCCGAAAGTTTACTTGGCGTTTCATGTTTGAACTTCTCTTGATACCATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAATGGACCC]
[-] EMBL AU174177 [TTTTTTTTTTTGGAAGNAAAAACCAGCCGTCACGGNCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGAAATGTTTGGNACCCCATNACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTAGNANAAACTTTCCCGCCTCCCAGCGGNAAAGCCTCAACGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGNNCCAATGGTTGGCGCTTNACTTATCGAGCAGCAATTTGGCAAAGCTCCAATTCTN ]
[-] EMBL CB681283 [ TTACATAGGCTGAAATGTTTGGTACCCCATTACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGCACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTCGGAGAAACTTTCCCGCCTCCCAGCGGCAAAGCCTCAACGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGTCCCAATGGTTGGCGCTTCACTTATCGTGCAGCAATTTGGCAAAGCTCCAATTCTCTTTTTTCTTCAGCGTGAGATACTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCTAATCTCCGAAAGTTTACTTGGCGTTTCATGTTTGAACTTCTCTTGATACCATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAATGGACCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7889#0 TAAGCGAAAAGATGAGACTCTTGAATTTGCCCCCTTAACGTACACTGGTTAGCAACTGCT 60
consensus_7889#1 ------------------------------------------------------------
consensus_7889#0 CTTTCCGTCTCAATATAAATGTTATATCTACATTAGGTTATATTTATATTGAGATGGAAG 120
consensus_7889#1 ------------------------------------------------------------
consensus_7889#0 GAGTACTACCTGAATCCAAACTCTGATTGATCTCTTCCGTTTTTGATAATACGCAATCGG 180
consensus_7889#1 ------------------------------------------------------------
consensus_7889#0 AGCAGGAGAGAGGTTTTGGATTATGGATAGTACTGGAATGCGGTGATTAGGATGGAAGAA 240
consensus_7889#1 ------------------------------------------------------------
consensus_7889#0 GCATTCTGGACGATACAGGATCGGACATCTGGGCACGATTACTCCTCCTGGAAGTAAAAA 300
consensus_7889#1 --------------------------------------TTTTTTTTTTTGGAAGNAAAAA 22
** * * ****** *****
consensus_7889#0 CCAGCCGTCACGGCCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGA 360
consensus_7889#1 CCAGCCGTCACGGNCGATAGTGACGCTCGTTGTCGTTGGCAGGTGCATTACATAGGCTGA 82
************* **********************************************
consensus_7889#0 AATGTTTGGTACCCCATTACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGC 420
consensus_7889#1 AATGTTTGGNACCCCATNACATATTAGTCTTGATGATTCAATATACTTTTGCAGGTTGGC 142
********* ******* ******************************************
consensus_7889#0 ACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTCGGAGAAACTTTCCCGCCTCCCAGCG 480
consensus_7889#1 ACCGTTTTTTACTTGACGCTCTTAGCATCTCCCTAGNANAAACTTTCCCGCCTCCCAGCG 202
********************************** * * *********************
consensus_7889#0 GCAAAGCCTCAACGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGTCCCAA 540
consensus_7889#1 GNAAAGCCTCAACGCTCGAGCTGATTCATGTTGGCTGGAGTACTGTTTTGGTTGNNCCAA 262
* **************************************************** ****
consensus_7889#0 TGGTTGGCGCTTCACTTATCGTGCAGCAATTTGGCAAAGCTCCAATTCTCTTTTTTCTTC 600
consensus_7889#1 TGGTTGGCGCTTNACTTATCGAGCAGCAATTTGGCAAAGCTCCAATTCTNTTTTTTCTTC 322
************ ******** *************************** **********
consensus_7889#0 AG-GTGAGAT-CTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCT 658
consensus_7889#1 AGCGTGAGATACTAGCCATTCAAGCTTGAATTCTCCTTTTCCATCTCAACTATACAAGCT 382
** ******* *************************************************
consensus_7889#0 AATCTATCATGCACCTCCGAAAGTTTACTTGGCGTTTCATGTTTGAACTTCTCTTGATAC 718
consensus_7889#1 AAT-----------CTCCGAAAGTTTACTTGGCGTTTCATGTTTGAACTTCTCTTGATAC 431
*** **********************************************
consensus_7889#0 CATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAATGGACCCTTCAGCACC 778
consensus_7889#1 CATTCTCGGGGTATACCAGCTTCATCACGAGCTGGGTAGTTAAATGGACCC--------- 482
***************************************************
consensus_7889#0 ACATCATGCTCCTTTATTAAGTCTCTAAAAGTTGCATCTGGGACACGACCCATCATTTGG 838
consensus_7889#1 ------------------------------------------------------------
consensus_7889#0 CATACTTTTAGGAACCAATGCAGACCTACAGAGGCATGTGC 879
consensus_7889#1 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||