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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7900#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1597 fasta sequence
[AGAATTTTCCCTCCAACCTGCTAAAACCCTAGCACCCGCCGCCCCCGACGGCGCCGCTCGACGACGAGTCGCCGGCGTCGGTCGCCGACGAGAGCTAGGGCAAGTGCGGCGGTACAGGGTTTCAGAGGAGGAGGGGAGCATGGCGTCGAACAACGGCGCGGGGACCCTCAGGTCAACCTCCATCAACGGCGTCAAGCTCTACTCCATCACCGGCAACCGCTACGTCGCCCCATGGGTCCTCTCGAAGAAGAAGCGCGCCCTCCGCAAGGACGCAGAGTATCAGCGGAGGCTGGATTTGATCCATGACCTGAGGTTCGAGACCGCCACCACCAAGATCAAGGTGACACCGGATGAGCAGTATGTGATCGCCTCAGGTATTTACCCCCCACAAGTTAAAGTCTATGAATTGAAGGAGTTATCAATGAAGTTTGAGAGGCACATGATTTCAGAAATTGTAGATTTCCAGGTCCTTGGTGATGATTACTCAAAACTTGCATTTTTGTGTGCTGACCGTTCTGTATGCCTGCATGCAAAGTACGGTAGACACTATAGCTTGAGAATTCCAAGAATGGGAAGAGATATGGCATATGATTGCTGGTCTTGTGATTTGCTTTGCGCTGCTTCATCACCAGATGTGTATAGAATCAATTTAGAGCAGGGACGATTCCTTGCATCTCTTTCATCTCAATCTCCAGCAATAAATGTGGTTTCTCGGAGTAACATACATGGGCTCATTGCTTGTGGTGGTGAGGATGGTGTGGTTGAGTGCTTTGATATGAGGAGAAAATCTTCTGTTGGCAGAATTAACACAGCTGTCTCTCCTGAAGATTTTAATCAGGAGGTCACATCTCTGCAATTCGATGAAAACCAAGGATACCTTATGGCAGTAGGGAGCAGCACAGGAAAGGTAGCAATATATGATCTACGTATGTCTTCCCCTTTGCGAGTTAAGGATCATATGTATGGTAGCCCAATATTAAGTATTAAGTGGCACCAGACACTTAATTCTACTGAACCTAAGCTGATTACTGCTGACAAGCATATAGTGAGAGTTTGGGATCCTAATACAGGAAATAACATGACTAGCATTGAACCAGATGGTGGTACTATCAATGATGTTTGTGTTTTCCGGAACAGTGGTTTGATGTTATTAGCTTTGGACAATAGCCAGATCCCTGCCCACTTTATTCCTGCATTGGGCCCTGCTCCAAAGTGGTGCTCGCATCTTGATAATCTAACGGAAGAAATGGAAGAGAAGACAGAGAATATTGTATATGAAGATTTCAAGTTTTTAACAAAAGATGAGATGGATCGATATGATCTCTCTAAGTACATTGATCAGGGTCTTGTGAGAGCGCATATGCATGGATATGTGATGAAACTTCAGCTATATAAGAAGCTACTAGCTACTAGTGCTGTTGATCCTGAGAATATTCAAGAGAAGGTTAAGCAAAAGAAAATAGAAGAACAGAGAAAATCTCGCATAACGCAAGTTGTGAAAATACCAAAGGTTAACAGGCAAATTATGGATAATATACTTAAAGAGGAAGAGGAAATGGATGCTGATTTGGAGAATGATGAAAAATCAGGCATCAAG]
[+] EMBL AK064390 [AGAATTTTCCCTCCAACCTGCTAAAACCCTAGCACCCGCCGCCCCCGACGGCGCCGCTCGACGACGAGTCGCCGGCGTCGGTCGCCGACGAGAGCTAGGGCAAGTGCGGCGGTACAGGGTTTCAGAGGAGGAGGGGAGCATGGCGTCGAACAACGGCGCGGGGACCCTCAGGTCAACCTCCATCAACGGCGTCAAGCTCTACTCCATCACTGGCAACCGCTACGTCGCCCCATGGGTCCTCTCGAAGAAGAAGCGCGCCCTCCGCAAGGACGCAGAGTATCAGCGGAGGCTGGATTTGATCCATGACCTGAGGTTCGAGACCGCCACCACCAAGATCAAGGTGACACCGGATGAGCAGTATGTGATCGCCTCAGGTATTTACCCCCCACAAGTTAAAGTCTATGAATTGAAGGAGTTATCAATGAAGTTTGAGAGGCACATGATTTCAGAAATTGTAGATTTCCAGGTCCTTGGTGATGATTACTCAAAACTTGCATTTTTGTGTGCTGACCGTTCTGTATGCCTGCATGCAAAGTACGGTAGACACTATAGCTTGAGAATTCCAAGAATGGGAAGAGATATGGCATATGATTGCTGGTCTTGTGATTTGCTTTGCGCTGCTTCATCACCAGATGTGTATAGAATCAATTTAGAGCAGGGACGATTCCTTGCATCTCTTTCATCTCAATCTCCAGCAATAAATGTGGTTTCTCGGAGTAACATACATGGGCTCATTGCTTGTGGTGGTGAGGATGGTGTGGTTGAGTGCTTTGATATGAGGAGAAAATCTTCTGTTGGCAGAATTAACACAGCTGTCTCTCCTGAAGATTTTAATCAGGAGGTCACATCTCTGCAATTCGATGAAAACCAAGGATACCTTATGGCAGTAGGGAGCAGCACAGGAAAGGTAGCAATATATGATCTACGTATGTCTTCCCCTTTGCGAGTTAAGGATCATATGTATGGTAGCCCAATATTAAGTATTAAGTGGCACCAGACACTTAATTCTACTGAACCTAAGCTGATTACTGCTGACAAGCATATAGTGAGAGTTTGGGATCCTAATACAGGAAATAACATGACTAGCATTGAACCAGATGGTGGTACTATCAATGATGTTTGTGTTTTCCGGAACAGTGGTTTGATGTTATTAGCTTTGGACAATAGCCAGATCCCTGCCCACTTTATTCCTGCATTGGGCCCTGCTCCAAAGTGGTGCTCGCATCTTGATAATCTAACGGAAGAAATGGAAGAGAAGACAGAGAATATTGTATATGAAGATTTCAAGTTTTTAACAAAAGATGAGATGGATCGATATGATCTCTCTAAGTACATTGATCAGGGTCTTGTGAGAGCGCATATGCATGGATATGTGATGAAACTTCAGCTATATAAGAAGCTACTAGCTACTAGTGCTGTTGATCCTGAGAATATTCAAGAG ]
[+] EMBL AK121983 [ CCTCCAACCTGCTAAAACCCTAGCACCCGCCGCCCCCGACGGCGCCGCTCGACGACGAGTCGCCGGCGTCGGTCGCCGACGAGAGCTAGGGCAAGTGCGGCGGTACAGGGTTTCAGAGGAGGAGGGGAGCATGGCGTCGAACAACGGCGCGGGGACCCTCAGGTCAACCTCCATCAACGGCGTCAAGCTCTACTCCATCACCGGCAACCGCTACGTCGCCCCATGGGTCCTCTCGAAGAAGAAGCGCGCCCTCCGCAAGGACGCAGAGTATCAGCGGAGGCTGGATTTGATCCATGACCTGAGGTTCGAGACCGCCACCACCAAGATCAAGGTGACACCGGATGAGCAGTATGTGATCGCCTCAGGTATTTACCCCCCACAAGTTAAAGTCTATGAATTGAAGGAGTTATCAATGAAGTTTGAGAGGCACATGATTTCAGAAATTGTAGATTTCCAGGTCCTTGGTGATGATTACTCAAAACTTGCATTTTTGTGTGCTGACCGTTCTGTATGCCTGCATGCAAAGTACGGTAGACACTATAGCTTGAGAATTCCAAGAATGGGAAGAGATATGGCATATGATTGCTGGTCTTGTGATTTGCTTTGCGCTGCTTCATCACCAGATGTGTATAGAATCAATTTAGAGCAGGGACGATTCCTTGCATCTCTTTCATCTCAATCTCCAGCAATAAATGTGGTTTCTCGGAGTAACATACATGGGCTCATTGCTTGTGGTGGTGAGGATGGTGTGGTTGAGTGCTTTGATATGAGGAGAAAATCTTCTGTTGGCAGAATTAACACAGCTGTCTCTCCTGAAGATTTTAATCAGGAGGTCACATCTCTGCAATTCGATGAAAACCAAGGATACCTTATGGCAGTAGGGAGCAGCACAGGAAAGGTAGCAATATATGATCTACGTATGTCTTCCCCTTTGCGAGTTAAGGATCATATGTATGGTAGCCCAATATTAAGTATTAAGTGGCACCAGACACTTAATTCTACTGAACCTAAGCTGATTACTGCTGACAAGCATATAGTGAGAGTTTGGGATCCTAATACAGGAAATAACATGACTAGCATTGAACCAGATGGTGGTACTATCAATGATGTTTGTGTTTTCCGGAACAGTGGTTTGATGTTATTAGCTTTGGACAATAGCCAGATCCCTGCCCACTTTATTCCTGCATTGGGCCCTGCTCCAAAGTGGTGCTCGCATCTTGATAATCTAACGGAAGAAATGGAAGAGAAGACAGAGAATATTGTATATGAAGATTTCAAGTTTTTAACAAAAGATGAGATGGATCGATATGATCTCTCTAAGTACATTGATCAGGGTCTTGTGAGAGCGCATATGCATGGATATGTGATGAAACTTCAGCTATATAAGAAGCTACTAGCTACTAGTGCTGTTGATCCTGAGAATATTCAAGAG ]
[+] EMBL CB672475 [ CCATCCCCTGAAACAAGCTCTACTCCATCACCGGCAACCGCTACGTCGCCCCATGGGTCCTCTCGAAGAAGAAGCGCGCCCTCCGCAAGGACGCAGAGTATCAGCGGAGGCTGGATTTGATCCATGACCTGAGGTTCGAGACCGCCACCACCAAGATCAAGGTGACACCGGATGAGCAGTATGTGATCGCCTCAGGTATTTACCCCCCACAAGTTAAAGTCTATGAATTGAAGGAGTTATCAATGAAGTTTGAGAGGCACATGATTTCAGAAATTGTAGATTTCCAGGTCCTTGGTGATGATTACTCAAAACTTGCATTTTTGTGTGCTGACCGTTCTGTATGCCTGCATGCAAAGTACGGTAGACACTATAGCTTGAGAATTCCAAGAATGGGAAGAGATATGGCATATGATTGCTGGTCTTGTGATTTGCTTTGCGCTGCTTCATCACCAGATGTGTATAGAATCAATTTAGAGCAGGGACGATTCCTTGCATCTCTTTCATCTCAATCTCCAGCAATAAATGTGGTTTCTCGGAGTAACATACATGGGCTCATTGCTTGTGGTGGTGAGGATGGTGTGGTTGAGTGCTTTGATATGAGGAGAAAATCTTCTGTTGGCAGAATTAACACAGCTGTCTCTCCTGAAGATTTTAATCAGGAGGTCACATCTCTGCAATTCGATGAAAACCAAGGATACCTTATGGCAGTAGGGAGCAGCACAGGAAAGGTAGCAATATATGATCTACGTATGTCTTCCCCTTTGCG ]
[-] EMBL CB676260 [ AGGAGGTCACATCTCTGCAATTCGATGAAAACCAAGGATACCTTATGGCAGTAGGGAGCAGCACAGGAAAGGTAGCAATATATGATCTACGTATGTCTTCCCCTTTGCGAGTTAAGGATCATATGTATGGTAGCCCAATATTAAGTATTAAGTGGCACCAGACACTTAATTCTACTGAACCTAAGCTGATTACTGCTGACAAGCATATAGTGAGAGTTTGGGATCCTAATACAGGAAATAACATGACTAGCATTGAACCAGATGGTGGTACTATCAATGATGTTTGTGTTTTCCGGAACAGTGGTTTGATGTTATTAGCTTTGGACAATAGCCAGATCCCTGCCCACTTTATTCCTGCATTGGGCCCTGCTCCAAAGTGGTGCTCGCATCTTGATAATCTAACGGAAGAAATGGAAGAGAAGACAGAGAATATTGTATATGAAGATTTCAAGTTTTTAACAAAAGATGAGATGGATCGATATGATCTCTCTAAGTACATTGATCAGGGTCTTGTGAGAGCGCATATGCATGGATATGTGATGAAACTTCAGCTATATAAGAAGCTACTAGCTACTAGTGCTGTTGATCCTGAGAATATTCAAGAGAAGGTTAAGCAAAAGAAAATAGAAGAACAGAGAAAATCTCGCATAACGCAAGTTGTGAAAATACCAAAGGTTAACAGGCAAATTATGGATAATATACTTAAAGAGGAAGAGGAAATGGATGCTGATTTGGAGAATGATGAAAAATCAGGCATCAAG]
consensusID : consensus_7900#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 750 fasta sequence
[AATTTTCCCTCCAACCTGCTAAAACCCTAGCACCCGCCGCCCCCGACGGCGCCGCTCGACGACGAGTCGCCGGCGTCGGTCGCCGACGAGAGCTAGGGCAAGTGCGGCGGTACAGGGTTTCAGAGGAGGAGGGGAGCATGGCGTCGAACAACGGCGCGGGGACCCTCAGGTCAACCTCCATCAACGGCGTCAAGCTCTACTCCATCACCGGCAACCGCTACGTCGCCCCATGGGTCCTCTCGAAGAAGAAGCGCGCCCTCCGCAAGGACGCAGAGTATCAGCGGAGGCTGGATTTGATCCATGACCTGAGGTTCGAGACCGCCACCACCAAGATCAAGGTGACACCGGATGAGCAGTATGTGATCGCCTCAGGTATTTACCCCCCACAAGTTAAAGTCTATGAATTGAAGGAGTTATCAATGAAGTTTGAGAGGCACATGATTTCAGAAATTGTAGATTTCCAGGTCCTTGGTGATGATTACTCAAAACTTGCATTTTTGTGTGCTGACCGTTCTGTATGCCTGCATGCAAAGTACGGTAGACACTATAGCTTGAGAATTCCAAGAATGGGAAGAGATATGGCATATGATTGCTGGTCTTGTGATTTGCTTTGCGCTGCTTCATCACCAGATGTGTATAGAATCAATTTAGAGCAGCAATAAATGTGGTTTCTCGGAGTAACATACATGGGCTCATTGCTTGTGGTGGTGAGGATGGTGTGGTTGAGTGCTTTGATATGANGGAGAAATC]
[+] EMBL CB676259 [AATTTTCCCTCCAACCTGCTAAAACCCTAGCACCCGCCGCCCCCGACGGCGCCGCTCGACGACGAGTCGCCGGCGTCGGTCGCCGACGAGAGCTAGGGCAAGTGCGGCGGTACAGGGTTTCAGAGGAGGAGGGGAGCATGGCGTCGAACAACGGCGCGGGGACCCTCAGGTCAACCTCCATCAACGGCGTCAAGCTCTACTCCATCACCGGCAACCGCTACGTCGCCCCATGGGTCCTCTCGAAGAAGAAGCGCGCCCTCCGCAAGGACGCAGAGTATCAGCGGAGGCTGGATTTGATCCATGACCTGAGGTTCGAGACCGCCACCACCAAGATCAAGGTGACACCGGATGAGCAGTATGTGATCGCCTCAGGTATTTACCCCCCACAAGTTAAAGTCTATGAATTGAAGGAGTTATCAATGAAGTTTGAGAGGCACATGATTTCAGAAATTGTAGATTTCCAGGTCCTTGGTGATGATTACTCAAAACTTGCATTTTTGTGTGCTGACCGTTCTGTATGCCTGCATGCAAAGTACGGTAGACACTATAGCTTGAGAATTCCAAGAATGGGAAGAGATATGGCATATGATTGCTGGTCTTGTGATTTGCTTTGCGCTGCTTCATCACCAGATGTGTATAGAATCAATTTAGAGCAGCAATAAATGTGGTTTCTCGGAGTAACATACATGGGCTCATTGCTTGTGGTGGTGAGGATGGTGTGGTTGAGTGCTTTGATATGANGGAGAAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7900#0 AGAATTTTCCCTCCAACCTGCTAAAACCCTAGCACCCGCCGCCCCCGACGGCGCCGCTCG 60
consensus_7900#1 --AATTTTCCCTCCAACCTGCTAAAACCCTAGCACCCGCCGCCCCCGACGGCGCCGCTCG 58
**********************************************************
consensus_7900#0 ACGACGAGTCGCCGGCGTCGGTCGCCGACGAGAGCTAGGGCAAGTGCGGCGGTACAGGGT 120
consensus_7900#1 ACGACGAGTCGCCGGCGTCGGTCGCCGACGAGAGCTAGGGCAAGTGCGGCGGTACAGGGT 118
************************************************************
consensus_7900#0 TTCAGAGGAGGAGGGGAGCATGGCGTCGAACAACGGCGCGGGGACCCTCAGGTCAACCTC 180
consensus_7900#1 TTCAGAGGAGGAGGGGAGCATGGCGTCGAACAACGGCGCGGGGACCCTCAGGTCAACCTC 178
************************************************************
consensus_7900#0 CATCAACGGCGTCAAGCTCTACTCCATCACCGGCAACCGCTACGTCGCCCCATGGGTCCT 240
consensus_7900#1 CATCAACGGCGTCAAGCTCTACTCCATCACCGGCAACCGCTACGTCGCCCCATGGGTCCT 238
************************************************************
consensus_7900#0 CTCGAAGAAGAAGCGCGCCCTCCGCAAGGACGCAGAGTATCAGCGGAGGCTGGATTTGAT 300
consensus_7900#1 CTCGAAGAAGAAGCGCGCCCTCCGCAAGGACGCAGAGTATCAGCGGAGGCTGGATTTGAT 298
************************************************************
consensus_7900#0 CCATGACCTGAGGTTCGAGACCGCCACCACCAAGATCAAGGTGACACCGGATGAGCAGTA 360
consensus_7900#1 CCATGACCTGAGGTTCGAGACCGCCACCACCAAGATCAAGGTGACACCGGATGAGCAGTA 358
************************************************************
consensus_7900#0 TGTGATCGCCTCAGGTATTTACCCCCCACAAGTTAAAGTCTATGAATTGAAGGAGTTATC 420
consensus_7900#1 TGTGATCGCCTCAGGTATTTACCCCCCACAAGTTAAAGTCTATGAATTGAAGGAGTTATC 418
************************************************************
consensus_7900#0 AATGAAGTTTGAGAGGCACATGATTTCAGAAATTGTAGATTTCCAGGTCCTTGGTGATGA 480
consensus_7900#1 AATGAAGTTTGAGAGGCACATGATTTCAGAAATTGTAGATTTCCAGGTCCTTGGTGATGA 478
************************************************************
consensus_7900#0 TTACTCAAAACTTGCATTTTTGTGTGCTGACCGTTCTGTATGCCTGCATGCAAAGTACGG 540
consensus_7900#1 TTACTCAAAACTTGCATTTTTGTGTGCTGACCGTTCTGTATGCCTGCATGCAAAGTACGG 538
************************************************************
consensus_7900#0 TAGACACTATAGCTTGAGAATTCCAAGAATGGGAAGAGATATGGCATATGATTGCTGGTC 600
consensus_7900#1 TAGACACTATAGCTTGAGAATTCCAAGAATGGGAAGAGATATGGCATATGATTGCTGGTC 598
************************************************************
consensus_7900#0 TTGTGATTTGCTTTGCGCTGCTTCATCACCAGATGTGTATAGAATCAATTTAGAGCAGGG 660
consensus_7900#1 TTGTGATTTGCTTTGCGCTGCTTCATCACCAGATGTGTATAGAATCAATTTAGAGCAG-- 656
**********************************************************
consensus_7900#0 ACGATTCCTTGCATCTCTTTCATCTCAATCTCCAGCAATAAATGTGGTTTCTCGGAGTAA 720
consensus_7900#1 -----------------------------------CAATAAATGTGGTTTCTCGGAGTAA 681
*************************
consensus_7900#0 CATACATGGGCTCATTGCTTGTGGTGGTGAGGATGGTGTGGTTGAGTGCTTTGATATGAG 780
consensus_7900#1 CATACATGGGCTCATTGCTTGTGGTGGTGAGGATGGTGTGGTTGAGTGCTTTGATATGAN 741
***********************************************************
consensus_7900#0 GAGAAAATCTTCTGTTGGCAGAATTAACACAGCTGTCTCTCCTGAAGATTTTAATCAGGA 840
consensus_7900#1 GGAGAAATC--------------------------------------------------- 750
* *****
consensus_7900#0 GGTCACATCTCTGCAATTCGATGAAAACCAAGGATACCTTATGGCAGTAGGGAGCAGCAC 900
consensus_7900#1 ------------------------------------------------------------
consensus_7900#0 AGGAAAGGTAGCAATATATGATCTACGTATGTCTTCCCCTTTGCGAGTTAAGGATCATAT 960
consensus_7900#1 ------------------------------------------------------------
consensus_7900#0 GTATGGTAGCCCAATATTAAGTATTAAGTGGCACCAGACACTTAATTCTACTGAACCTAA 1020
consensus_7900#1 ------------------------------------------------------------
consensus_7900#0 GCTGATTACTGCTGACAAGCATATAGTGAGAGTTTGGGATCCTAATACAGGAAATAACAT 1080
consensus_7900#1 ------------------------------------------------------------
consensus_7900#0 GACTAGCATTGAACCAGATGGTGGTACTATCAATGATGTTTGTGTTTTCCGGAACAGTGG 1140
consensus_7900#1 ------------------------------------------------------------
consensus_7900#0 TTTGATGTTATTAGCTTTGGACAATAGCCAGATCCCTGCCCACTTTATTCCTGCATTGGG 1200
consensus_7900#1 ------------------------------------------------------------
consensus_7900#0 CCCTGCTCCAAAGTGGTGCTCGCATCTTGATAATCTAACGGAAGAAATGGAAGAGAAGAC 1260
consensus_7900#1 ------------------------------------------------------------
consensus_7900#0 AGAGAATATTGTATATGAAGATTTCAAGTTTTTAACAAAAGATGAGATGGATCGATATGA 1320
consensus_7900#1 ------------------------------------------------------------
consensus_7900#0 TCTCTCTAAGTACATTGATCAGGGTCTTGTGAGAGCGCATATGCATGGATATGTGATGAA 1380
consensus_7900#1 ------------------------------------------------------------
consensus_7900#0 ACTTCAGCTATATAAGAAGCTACTAGCTACTAGTGCTGTTGATCCTGAGAATATTCAAGA 1440
consensus_7900#1 ------------------------------------------------------------
consensus_7900#0 GAAGGTTAAGCAAAAGAAAATAGAAGAACAGAGAAAATCTCGCATAACGCAAGTTGTGAA 1500
consensus_7900#1 ------------------------------------------------------------
consensus_7900#0 AATACCAAAGGTTAACAGGCAAATTATGGATAATATACTTAAAGAGGAAGAGGAAATGGA 1560
consensus_7900#1 ------------------------------------------------------------
consensus_7900#0 TGCTGATTTGGAGAATGATGAAAAATCAGGCATCAAG 1597
consensus_7900#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||