These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7904#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 878 fasta sequence [TTTTTTTTTAACCAAGGATCTGATTCTTTGTATAAATTTCCAGAGTAACTGGTACAGTGAATAAGTTGGCTCATTGGCTGAGTTCTGCTACAAAATACTTTCAGTATGCAGTTTGACTTGCAGCAGTAGTTTCAACCTCAGGTGAGATATTGTGTGAGAGAGGATACTGAATGGCTGGACTGTTTCTCCTGTGCAAAATCTTGGCTCTTAGTTGAGGTTCCTCTGTACAATGGCATCAGGACGCCAAGAAGAAAATAGAAAATTAAGTTACATATAAAGGCAAGAGGAGTATACATGCGGCGAACTACTACTTCGGAGGGCCTTCAATCTGTAGGGNACCAATATACAGTCTTGTCATTTGACAGATGTNAGTACGCCAATTGTAGTATGCTTCCGGGAGTTCTGCCTAANAGGAATGGACGATATCTGCTATTTACATTGAACAAAATTAGTAAGAGCTATTGGTCAAGACAAACTTCAGTGTCCTGAAAATAAATATAACGACTGAAGCAAAAGGTTCAAATGTGGATTCTGAACTCTCAAAGTGCCTGATTCACCTGAGATTCTATAAGCTGCTAACAGGTGAAGTGCTTCAGAACTACACCGAACAAAGATTATACACAGCAAGGCAGCAAGATAATAGACAGCAAGGCAGCAAGCCCCATGCCAGCAATTAGGAAAAAAATGTCACTAGCCAGTAGTGCTACCATCTGAGCTGGGATCAGAGTTTTTCTTTTCTTTTCTTTTGGCCACGTTGAGTTTACAAGCTCAGGAAACAACATTGTGAGCCATGTTGCTTTGACGTTTAAAGGGAGTGAATCTAGCAACTAGAATGCCAATAAACCAGTTCTTAATCTAATAGTAAGTGACTANAGCTG] [-] EMBL AU056470 [TTTTTTTTTAACCAAGGATCTGATTCTTTGTATAAATTTCCAGAGTAACTGGTACAGTGAATAAGTTGGCTCATTGGCTGAGTTCTGCTACAAAATACTTTCAGTATGCAGTTTGACTTGCAGCAGTAGTTTCAACCTCAGGTGAGATATTGTGTGAGAGAGGATACTGAATGGCTGGACTGTTTCTCCTGTGCAAAATCTTGGCTCTTAGTTGAGGTTCCTCTGTACAATGGCATCAGGACGCCAAGAAGAAAATAGAAAATTAAGTTACATATAAAGGCAAGAGGAGTATACATGCGGCGAACTACTACTTCGGAGGGCCTTCAATCTGTAGGGNACCAATATACAGTCTTGTCATTTGACAGATGTNAGTACGCCAATTGTAGTATGCTTCCGGGAGTTCTGCCTAANAGG ] [+] EMBL CB666747 [ AATTTCCAGAGTAACTGGTACAGTGAATAAGTTGGCTCATTGGCTGAGTTCTGCTACAAAATACTTTCAGTATGCAGTTTGACTTGCAGCAGTAGTTTCAACCTCAGGTGAGATATTGTGTGAGAGAGGATACTGAATGGCTGGACTGTTTCTCCTGTGCAAAATCTTGGCTCTTAGTTGAGGTTCCTCTGTACAATGGCATCAGGACGCCAAGAAGAAAATAGAAAATTAAGTTACATATAAAGGCAAGAGGAGTATACATGCGGCGAACTACTACTTCGGAGGTCCTTCAATCTGTAGGGTACCAATATACAGTCTTGTCATTTGACAGATGTTAGTACGCCAATTGTAGTATGCTTCCGGGAGTTCTGCCTAACAGGAATGGACGATATCTGCTATTTACATTGAACAAAATTAGTAAGAGCTATTGGTCAAGACAAACTTCAGTGTCCTGAAAATAAATATAACGACTGAAGCAAAAGGTTCAAATGTGGATTCTGAACTCTCAAAGTGCCTGATTCACCTGAGATTCTATAAGCTGCTAACAGGTGAAGTGCTTCAGAACTACACCGAACAAAGATTATACACAGCAAGGCAGCAAGATAATAGACAGCAAGGCAGCAAGCCCCATGCCAGCAATTAGGAAAAAAATGTCACTAGCCAGTAGTGCTACCATCTGAGCTGGGATCAGAGTTTTTCTTTTCTTTTCTTTTGGCCACGTTGAGTTTACAAGCTCAGGAAACAACATTGTGAGCCATGTTGCTTTGACGTTTAAAGGGAGTGAATCTAGCAACTAGAATGCCAATAAACCAGTTCTTAATCTAATAGTAAGTGACTANAGCTG] consensusID : consensus_7904#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 546 fasta sequence [ATGGTTATAGTCTTATAGATAGCTCACGGTGCACATCTGAAGAACATGTACATGCGGGAGAAGCTAGTTTAACCAAGGATCTGATTCTTTGTATAAATTTCCAGAGTAACTGGTACAGTGAATAAGTTGGCTCATTGGCTGAGTTCTGCTACAAAATACTTTCAGTATGCAGTTTGACTTGCAGCAGTAGTTTCAACCTCAGGTGAGATATTGTGTGAGAGAGGATACTGAATGGCTGGACTGTTTCTCCTGTGCAAAATCTTGGCTCTTAATTGAGGTTCCTCTGTACAATGGCATCAGGACGCCAAGAAGAAAATAGAAAATTAAGTTACATATAAAGGCAAGAGGAGTATACATGCGGCGAACTACTACTTCGGAGGTCCTTCAATCTGTAGGGTACCAATATACAGTCTTGTCATTTGACAGATGTTAGTACGCCAATTGTAGTATGCTTCCGGGAGTTCTGCCTAACAGGAATGGACGATATCTTTGCCAACTTGAATTGTGTTGATGACAACAAAGATTCCATCCATTGCCAACTTTAGC] [+] EMBL CB672101 [ATGGTTATAGTCTTATAGATAGCTCACGGTGCACATCTGAAGAACATGTACATGCGGGAGAAGCTAGTTTAACCAAGGATCTGATTCTTTGTATAAATTTCCAGAGTAACTGGTACAGTGAATAAGTTGGCTCATTGGCTGAGTTCTGCTACAAAATACTTTCAGTATGCAGTTTGACTTGCAGCAGTAGTTTCAACCTCAGGTGAGATATTGTGTGAGAGAGGATACTGAATGGCTGGACTGTTTCTCCTGTGCAAAATCTTGGCTCTTAATTGAGGTTCCTCTGTACAATGGCATCAGGACGCCAAGAAGAAAATAGAAAATTAAGTTACATATAAAGGCAAGAGGAGTATACATGCGGCGAACTACTACTTCGGAGGTCCTTCAATCTGTAGGGTACCAATATACAGTCTTGTCATTTGACAGATGTTAGTACGCCAATTGTAGTATGCTTCCGGGAGTTCTGCCTAACAGGAATGGACGATATCTTTGCCAACTTGAATTGTGTTGATGACAACAAAGATTCCATCCATTGCCAACTTTAG ] [-] EMBL AU101922 [ tttttttTTTAACCAAGGATCTGATTCTTTGTATAAATTTCCAGAGTAACTGGTACAGTGAATAAGTTGGCTCATTGGCTGAGTTCTGCTACAAAATACTTTCAGTATGCAGTTTGACTTGCAGCAGTAGTTTCAACCTCAGGTGAGATATTGTGTGAGAGAGGATACTGAATGGCTGGACTGTTTCTCCTGTGCAAAATCTTGGCTCTTAGTTGAGGTTCCTCTGTACAATGGCATCAGGACGCCAAGAAGAAAATAGAAAATTAAGTTACATATAAAGGCAAGAGGAGTATACATGCGGCGAACTACTACTTCGGAGGTCCTTCAATCTGTAGGGTACCAATATACAGTCTTGTCATTTGACAGATGTTAGTACGCCAATTGTAGTATGCTTCCGGGAGTTCTGCCTAACAGGAATGGACGATATCTTTGCCAACTTGAATTGTGTTGATGACAACAAAGATTCCATCCATTGCCAACTTTAGC] consensusID : consensus_7904#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTGAGCTGGGATCAAAGTTTTTCTTTTCTTTTCTTTTGGCCACGTTGAGTTTACAAGCTCAGGAAACAACATTGTGAGCCATGTTGCTTTGACGTTTAAAGGGAGTGAATCTAGCAACTAGAATGCCAATAAACCAGTTCTTAATCTAATAGTAAGTGACTAAAGCTGCAAATGATGTAGGACAGTCTTGACTTAACGTATAATAAAAAGTTATGAATTGTGACAAGTGACCATGCATACCTTTGCCAACTTGAATTGTGTTGATGACAACAAAGATTCCATCCATTGCCAACTTTAG] [+] EMBL CF308271 [TTTTTTTTTTTTTTTTTTTTTTTTGAGCTGGGATCAAAGTTTTTCTTTTCTTTTCTTTTGGCCACGTTGAGTTTACAAGCTCAGGAAACAACATTGTGAGCCATGTTGCTTTGACGTTTAAAGGGAGTGAATCTAGCAACTAGAATGCCAATAAACCAGTTCTTAATCTAATAGTAAGTGACTAAAGCTGCAAATGATGTAGGACAGTCTTGACTTAACGTATAATAAAAAGTTATGAATTGTGACAAGTGACCATGCATACCTTTGCCAACTTGAATTGTGTTGATGACAACAAAGATTCCATCCATTGCCAACTTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7904#0 ------------------------------------------------------------ consensus_7904#1 ATGGTTATAGTCTTATAGATAGCTCACGGTGCACATCTGAAGAACATGTACATGCGGGAG 60 consensus_7904#2 ------------------------------------------------------------ consensus_7904#0 -TTTTTTTTTAACCAAGGATCTGATTCTTTGTATAAATTTCCAGAGTAACTGGTACAGTG 59 consensus_7904#1 AAGCTAGTTTAACCAAGGATCTGATTCTTTGTATAAATTTCCAGAGTAACTGGTACAGTG 120 consensus_7904#2 ------------------------------------------------------------ consensus_7904#0 AATAAGTTGGCTCATTGGCTGAGTTCTGCTACAAAATACTTTCAGTATGCAGTTTGACTT 119 consensus_7904#1 AATAAGTTGGCTCATTGGCTGAGTTCTGCTACAAAATACTTTCAGTATGCAGTTTGACTT 180 consensus_7904#2 ------------------------------------------------------------ consensus_7904#0 GCAGCAGTAGTTTCAACCTCAGGTGAGATATTGTGTGAGAGAGGATACTGAATGGCTGGA 179 consensus_7904#1 GCAGCAGTAGTTTCAACCTCAGGTGAGATATTGTGTGAGAGAGGATACTGAATGGCTGGA 240 consensus_7904#2 -----------------------------------------------TTTTTTTTTTTTT 13 * * * consensus_7904#0 CTGTTTCTCCTGTGC-AAAATCTTGGCTCTTAGTTGAGGTTCCTCTG--TACAATGGCAT 236 consensus_7904#1 CTGTTTCTCCTGTGC-AAAATCTTGGCTCTTAATTGAGGTTCCTCTG--TACAATGGCAT 297 consensus_7904#2 TTTTTTTTTTTGAGCTGGGATCAAAGTTTTTCTTTTCTTTTCTTTTGGCCACGTTGAGTT 73 * *** * ** ** *** * * ** ** *** * ** ** ** * consensus_7904#0 CAGGACGCCAAGAAGAAA-ATAGAAAATTAAGTTACATATAAAGGCAAGAGGAGTATACA 295 consensus_7904#1 CAGGACGCCAAGAAGAAA-ATAGAAAATTAAGTTACATATAAAGGCAAGAGGAGTATACA 356 consensus_7904#2 TACAAGCTCAGGAAACAACATTGTGAGCCATGTTGCTTTGACGTTTAAAGGGAGTGAATC 133 * * ** *** ** ** * * * *** * * * ** ***** * consensus_7904#0 T-GCGGCGA-ACTACTACTTCGGAGGGCCTTCAATCTGTAGGGNACCAATATACAGTCTT 353 consensus_7904#1 T-GCGGCGA-ACTACTACTTCGGAGGTCCTTCAATCTGTAGGGTACCAATATACAGTCTT 414 consensus_7904#2 TAGCAACTAGAATGCCAATAAACCAGTTCTTAATCTAATAGTAAGTGACTAAAGCTGCAA 193 * ** * * * * * * * * *** * *** * ** * * consensus_7904#0 GTCATTTGACAGATGTNAGTACGCCAATTGTAGTATGCTTCCGGGAGTTCTGCCTAANAG 413 consensus_7904#1 GTCATTTGACAGATGTTAGTACGCCAATTGTAGTATGCTTCCGGGAGTTCTGCCTAACAG 474 consensus_7904#2 ATGATGTAGGACA-GTCTTGACTTAACGTATAATAAAAAGTTATGAATTGTGACAAGTGA 252 * ** * * * ** ** * * ** ** ** ** ** * * consensus_7904#0 GAATGGACGATATCTG---CTATTTACATTGAACAAAATTAGTAAGAGCTATTGGTCAAG 470 consensus_7904#1 GAATGGACGATATCTTTGCCAACTTGAATTGTGTTGATGACAACAAAGATTCCATCCATT 534 consensus_7904#2 CCATGCA---TACCTTTGCCAACTTGAATTGTGTTGATGACAACAAAGATTCCATCCATT 309 *** * ** ** * * ** **** * * ** * ** consensus_7904#0 ACAAACTTCAGTGTCCTGAAAATAAATATAACGACTGAAGCAAAAGGTTCAAATGTGGAT 530 consensus_7904#1 GCCAACTTTAGC------------------------------------------------ 546 consensus_7904#2 GCCAACTTTAG------------------------------------------------- 320 * ***** ** consensus_7904#0 TCTGAACTCTCAAAGTGCCTGATTCACCTGAGATTCTATAAGCTGCTAACAGGTGAAGTG 590 consensus_7904#1 ------------------------------------------------------------ consensus_7904#2 ------------------------------------------------------------ consensus_7904#0 CTTCAGAACTACACCGAACAAAGATTATACACAGCAAGGCAGCAAGATAATAGACAGCAA 650 consensus_7904#1 ------------------------------------------------------------ consensus_7904#2 ------------------------------------------------------------ consensus_7904#0 GGCAGCAAGCCCCATGCCAGCAATTAGGAAAAAAATGTCACTAGCCAGTAGTGCTACCAT 710 consensus_7904#1 ------------------------------------------------------------ consensus_7904#2 ------------------------------------------------------------ consensus_7904#0 CTGAGCTGGGATCAGAGTTTTTCTTTTCTTTTCTTTTGGCCACGTTGAGTTTACAAGCTC 770 consensus_7904#1 ------------------------------------------------------------ consensus_7904#2 ------------------------------------------------------------ consensus_7904#0 AGGAAACAACATTGTGAGCCATGTTGCTTTGACGTTTAAAGGGAGTGAATCTAGCAACTA 830 consensus_7904#1 ------------------------------------------------------------ consensus_7904#2 ------------------------------------------------------------ consensus_7904#0 GAATGCCAATAAACCAGTTCTTAATCTAATAGTAAGTGACTANAGCTG 878 consensus_7904#1 ------------------------------------------------ consensus_7904#2 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||