These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7907#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1803 fasta sequence [CAAGCAACTCTCGGTGGTGTGGTGTCCACTGTGCAGCTCCCGTGCAGGCGTTCCGCTTTGATGGAAACCGCCGCGGCCGTGGTGTGCCGAGGCGGCGGGCTGCGCGCGCCGGCGCGTCGCGGTGGCAGTGACAGCAGCACGACGCGCGCGGGTGGCGTTGCTGCCTCCCCGGCGCCCGCCACCACCGCGCGACGGAGGCCGCTGCTCGTCGCGTCGCTCGGGGAGCCCCTCATCACGGCGCAACCCTTGTCGTCGTCCCTGGGAGATGGCGCCGCGGTACACGAGACGCTGGCTCGCTCCGATTCGGTGATCCCGTCGCTGAAGCCGTCTCACTGCGTTGATCACTCGGTCCAGGTTGACGCCGACGAGGAGACCGGCTCCACCAAGACACTCCCACCTCCTGATGACGTTCCTACGAAGACAGTGCACGTCAAATTCGTGCTGCAAAAGCGGTGCGCGTTCGGGCAGCGCTTCCTCGTCGTCGGCGACGTCGCGGCGCTCGGTCTCTGGAATCCGGCGAAGGCGGCTGCTCTGGATTGGTCCGAAGACCACGTGTGGACAGTGAAGAAGGAATTGCCAGCAGAAAGATCGATCGAGTTCAAGTTCTTGCTGCAAGATCGATCGGGACATGTCGAATGGCAGCACGGTCGTAACAGAATACTGCATGTAGCTGACACCTCGAACACCTTGATTGTCTGCGAGGACTGGGACGAGGCGAAGAATCAGCAAGTATCAGAAGAGATTGGTGACGCAGATGGGATATTTTCAGGAAGCGATGGCGTCTTCCAGGAAGATGAGCTTCAACTGGGTGAAGAACAAGAGACCAACAAGGGTGTGACTGTAGGTGTGGATGATGCAAAATCGGCTTTAGTCACTTATATTTACAGGGAAATGATGGGAGCAAACGACGCGATCCAGCCACAGTTAGCATTGGACAAACACCACAAGATTCCAGATGAGCTTAGTGGGGAGGCAAACATGGCAGCACAAGATGGCAATCACACTGCTACTGCAGCCGCAGCTTCTGGTTTTGCTGGAAGCAACGGTGAGGATGCCATCTTGCACAAGGAGGGCGATCCAGTAGAGAATAATAGGCTGGGGCTGGCCAGCATTTTCTTCAATGACATGGCCTGGACCAGGAAAGCCCTGCAGCAGTTGCTCCGAAGCCTTGGTTTCCAAATCGGCACGAGAAAAACATGAAGTAAGCATCAGAGACGCT-GACCTGCAGTTTTGGCTGATCAC-ACGGTCTCGCGGTGCCTTCA-TTCAAAACTCGAAAGCTTCTACATGCTGCAAACCTACAAGGAACAAGTGTATTGAGAACTGCAACAAAAAACCCTTTACGTTGCTAAGGTCTGCAACACCAGCAGTACTTGTTAGCAGTGCAAAAAGAGCAGGAAAGCTGTTAGCAGTGCAAGTATGTTTAGGACCAGTAATGACTAAGCT-ACCAAAAAACTCAATTAGTGAAATGCATATTGTGGTTAAATTTATCTGTTCGATAAATTCTGTAGAATACATCTAGAATAAGAGCCAGGAAAAGCTGAAAGTCTGGAGATTTGGCATAACATGTGCTCCATAACCA-CACGTATAAGCTCAACCACATGTACTTTAAT-CCACCAGATTTACGTTCATTTCTC-ATCATTTCAGTTGTAATGCTAATATGCTCTTGTTCTGGTGATCTAGTAAAAATGATGTCCATGATTTGCAAAGCTTTCTTTAATTTACATNAGAAAGCTGGCAGCATTTAAAACATGTAAACGTGAAATATCAGCGTGGACATTCCACTTTAATTNAAAAAAAAAAAAA] [+] EMBL AK107570 [CAAGCAACTCTCGGTGGTGTGGTGTCCACTGTGCAGCTCCCGTGCAGGCGTTCCGCTTTGATGGAAACCGCCGCGGCCGTGGTGTGCCGAGGCGGCGGGCTGCGCGCGCCGGCGCGTCGCGGTGGCAGTGACAGCAGCACGACGCGCGCGGGTGGCGTTGCTGCCTCCCCGGCGCCCGCCACCACCGCGCGACGGAGGCCGCTGCTCGTCGCGTCGCTCGGGGAGCCCCTCATCACGGCGCAACCCTTGTCGTCGTCCCTGGGAGATGGCGCCGCGGTACACGAGACGCTGGCTCGCTCCGATTCGGTGATCCCGTCGCTGAAGCCGTCTCACTGCGTTGATCACTCGGTCCAGGTTGACGCCGACGAGGAGACCGGCTCCACCAAGACACTCCCACCTCCTGATGACGTTCCTACGAAGACAGTGCACGTCAAATTCGTGCTGCAAAAGCGGTGCGCGTTCGGGCAGCGCTTCCTCGTCGTCGGCGACGTCGCGGCGCTCGGTCTCTGGAATCCGGCGAAGGCGGCTGCTCTGGATTGGTCCGAAGACCACGTGTGGACAGTGAAGAAGGAATTGCCAGCAGAAAGATCGATCGAGTTCAAGTTCTTGCTGCAAGATCGATCGGGACATGTCGAATGGCAGCACGGTCGTAACAGAATACTGCATGTAGCTGACACCTCGAACACCTTGATTGTCTGCGAGGACTGGGACGAGGCGAAGAATCAGCAAGTATCAGAAGAGATTGGTGACGCAGATGGGATATTTTCAGGAAGCGATGGCGTCTTCCAGGAAGATGAGCTTCAACTGGGTGAAGAACAAGAGACCAACAAGGGTGTGACTGTAGGTGTGGATGATGCAAAATCGGCTTTAGTCACTTATATTTACAGGGAAATGATGGGAGCAAACGACGCGATCCAGCCACAGTTAGCATTGGACAAACACCACAAGATTCCAGATGAGCTTAGTGGGGAGGCAAACATGGCAGCACAAGATGGCAATCACACTGCTACTGCAGCCGCAGCTTCTGGTTTTGCTGGAAGCAACGGTGAGGATGCCATCTTGCACAAGGAGGGCGATCCAGTAGAGAATAATAGGCTGGGGCTGGCCAGCATTTTCTTCAATGACATGGCCTGGACCAGGAAAGCCCTGCAGCAGTTGCTCCGAAGCCTTGGTTTCCAAATCGGCACGAGAAAAACATGAAGTAAGCATCAGAGACGCT GACCTGCAGTTTTGGCTGATCAC ACGGTCTCGCGGTGCCTTCA TTCAAAACTCGAAAGCTTCTACATGCTGCAAACCTACAAGGAACAAGTGTATTGAGAACTGCAACAAAAAACCCTTTACGTTGCTAAGGTCTGCAACACCAGCAGTACTTGTTAGCAGTGCAAAAAGAGCAGGAAAGCTGTTAGCAGTGCAAGTATGTTTAGGACCAGTAATGACTAAGCT ACCAAAAAAC ] [-] EMBL CB651078 [ AAGTATCAGAAGAGATTGGTGACGCAGATGGGATATTTTCAGGAAGCGATGGCGTCTTCCAGGAAGATGAGCTTCAACTGGGTGAAGAACAAGAGACCAACAAGGGTGTGACTGTAGGTGTGGATGATGCAAAATCGGCTTTAGTCACTTATATTTACAGGGAAATGATGGGAGCAAACGACGCGATCCAGCCAC AGCATTGGACAAACACCACAAGATTCCAGATGAGCTTAGTGGGGAGGCAAACATGGCAGCACAAGATGGCAATCACACTGCTACTGCAGCCGCAGCTTCTGGTTTTGCTGGAAGCAACGGTGAGGATGCCATCTTGCACAAGGAGGGCGATCCAGTAGAGAATAATAGGCTGGGGCTGGCCAGCATTTTCTTCAATGACATGGCCTGGACCAGGAAAGCCCTGCAGCAGTTGCTCCGAAGCCTTGGTTTCCAAATCGGCACGAGAAAAACATGAAGTAAGCATCAGAGACGCT GACCTGCAGTTTTGGCTGATCAC ACGGTCTCGCGGTGCCTTCA TTCAAAACTCGAAAGCTTCTACATGCTGCAAACCTACAAGGAACAAGTGTATTGAGAACTGCAACAAAAAACCCTTTACGTTGCTAAGGTCTGCAACACCAGCAGTACTTGTTAGCAGTGCAAAAAGAGCAGGAAAGCTGTTAGCAGTGCAAGTATGTTTAGGACCAGTAATGACTAAGCT ACCAAAAAACTCAATTAGTGAAATGCATATTGTGGTTAAATT ] [+] EMBL BQ907891 [ AGCATCAGAGACGCTGGACCTGCAGTTTTGGCTGATCACAACGGTCTCGCGGTGCCTTCAGTTCAAAACTCGAAAGCTTCTACATGCTGCAAACCTACAAGGAACAAGTGTATTGAGAACTGCAACNAAAAACCCTTTACGTTGCTAAGGTCTGCAACACCAGCAGTACTTGTTAGCAGTGC AAAAGAGCAGGAAAGCTGTTAGCAGTGCAAGTATGTTTAGGACCAGTAATGACTAAGCTGACC AAAAACTCAATTAGTGAAATGCATATTGTGGTTAAATTTATCTGTTCGATAAATTCTGTAGAATACATCTAGAATAAGAGCCAGGAAAAGCTGAAAGTCTGGAGATTTGGCATAACATGTGCTCCATAACCA CACGTATAAGCTCAACCACATGTACTTTAAT CCACCAGATTTACGTTCATTTCTC ATCATTTCAGTTGTAATGCTAATATGCTCTTGTTCTGGTGATCTAGTAAAAATGATGTCCATGATTTGCAAA ] [+] EMBL AU032829 [ GGCATNACATGTGCTCCATAACCACCACGTATAAGCTCAACCACATGTNCTTTAATNCCACCAGATTTNCGTTNATNTCTCAATCATTTCAGTNGTAATGCTAATATGCTCTTGTTCTGGTGATCTAGTAAANATGATGTCCATGATTTGCAATGCTTTCTTTAATTTACATNAGAAAGCTGGCAGCATTTAAAACATGTAAACGTGAAATATCAGCGTGGACATTCCACTTTAATTNAAAAAAAAAAAAA] consensusID : consensus_7907#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [AGGNATTGCCAGCAGAAAGATCGATCGAGTTCAAGTTCTTGCTGCAAGATCGATCGGGACATGTCGAATGGCAGCACGGTCGTAACAGAATACTGCATGTAGCTGACACCTCGAACACCTTGATTGTCTGCGAGGACTGGGACGAGGCGAAGAATCAGCAAGTATCAGAAGAGATTGGTGACGCAGATGGGATATTTTCAGGAAGCGATGGCGTCTTCCAGGAAGATGAGCTTCAACTGGGTGAAGNACAAGAGACCAACAAGGGTGTGACTGTAGGTGTGGATGATGCAAAATCGGCTTTAGTCACTTATATTTACAGGGAAATGATGGGAGCAAACGACGCGATCCAGCCACAGGTAAGTTGCCTGGTGACAGTATTGTTCTGTGTAAAAGGGCAGCAAACATTTATGTNCAACAATATACTACTCCCTCAGTATTTTAATGTA] [+] EMBL OSS14993A [AGGNATTGCCAGCAGAAAGATCGATCGAGTTCAAGTTCTTGCTGCAAGATCGATCGGGACATGTCGAATGGCAGCACGGTCGTAACAGAATACTGCATGTAGCTGACACCTCGAACACCTTGATTGTCTGCGAGGACTGGGACGAGGCGAAGAATCAGCAAGTATCAGAAGAGATTGGTGACGCAGATGGGATATTTTCAGGAAGCGATGGCGTCTTCCAGGAAGATGAGCTTCAACTGGGTGAAGNACAAGAGACCAACAAGGGTGTGACTGTAGGTGTGGATGATGCAAAATCGGCTTTAGTCACTTATATTTACAGGGAAATGATGGGAGCAAACGACGCGATCCAGCCACAGGTAAGTTGCCTGGTGACAGTATTGTTCTGTGTAAAAGGGCAGCAAACATTTATGTNCAACAATATACTACTCCCTCAGTATTTTAATGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7907#0 CAAGCAACTCTCGGTGGTGTGGTGTCCACTGTGCAGCTCCCGTGCAGGCGTTCCGCTTTG 60 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 ATGGAAACCGCCGCGGCCGTGGTGTGCCGAGGCGGCGGGCTGCGCGCGCCGGCGCGTCGC 120 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 GGTGGCAGTGACAGCAGCACGACGCGCGCGGGTGGCGTTGCTGCCTCCCCGGCGCCCGCC 180 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 ACCACCGCGCGACGGAGGCCGCTGCTCGTCGCGTCGCTCGGGGAGCCCCTCATCACGGCG 240 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 CAACCCTTGTCGTCGTCCCTGGGAGATGGCGCCGCGGTACACGAGACGCTGGCTCGCTCC 300 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 GATTCGGTGATCCCGTCGCTGAAGCCGTCTCACTGCGTTGATCACTCGGTCCAGGTTGAC 360 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 GCCGACGAGGAGACCGGCTCCACCAAGACACTCCCACCTCCTGATGACGTTCCTACGAAG 420 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 ACAGTGCACGTCAAATTCGTGCTGCAAAAGCGGTGCGCGTTCGGGCAGCGCTTCCTCGTC 480 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 GTCGGCGACGTCGCGGCGCTCGGTCTCTGGAATCCGGCGAAGGCGGCTGCTCTGGATTGG 540 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 TCCGAAGACCACGTGTGGACAGTGAAGAAGGAATTGCCAGCAGAAAGATCGATCGAGTTC 600 consensus_7907#1 ----------------------------AGGNATTGCCAGCAGAAAGATCGATCGAGTTC 32 *** **************************** consensus_7907#0 AAGTTCTTGCTGCAAGATCGATCGGGACATGTCGAATGGCAGCACGGTCGTAACAGAATA 660 consensus_7907#1 AAGTTCTTGCTGCAAGATCGATCGGGACATGTCGAATGGCAGCACGGTCGTAACAGAATA 92 ************************************************************ consensus_7907#0 CTGCATGTAGCTGACACCTCGAACACCTTGATTGTCTGCGAGGACTGGGACGAGGCGAAG 720 consensus_7907#1 CTGCATGTAGCTGACACCTCGAACACCTTGATTGTCTGCGAGGACTGGGACGAGGCGAAG 152 ************************************************************ consensus_7907#0 AATCAGCAAGTATCAGAAGAGATTGGTGACGCAGATGGGATATTTTCAGGAAGCGATGGC 780 consensus_7907#1 AATCAGCAAGTATCAGAAGAGATTGGTGACGCAGATGGGATATTTTCAGGAAGCGATGGC 212 ************************************************************ consensus_7907#0 GTCTTCCAGGAAGATGAGCTTCAACTGGGTGAAGAACAAGAGACCAACAAGGGTGTGACT 840 consensus_7907#1 GTCTTCCAGGAAGATGAGCTTCAACTGGGTGAAGNACAAGAGACCAACAAGGGTGTGACT 272 ********************************** ************************* consensus_7907#0 GTAGGTGTGGATGATGCAAAATCGGCTTTAGTCACTTATATTTACAGGGAAATGATGGGA 900 consensus_7907#1 GTAGGTGTGGATGATGCAAAATCGGCTTTAGTCACTTATATTTACAGGGAAATGATGGGA 332 ************************************************************ consensus_7907#0 GCAAACGACGCGATCCAGCCACAGTTAGCATTGGACAAACACCACAAGATTCCAGATGAG 960 consensus_7907#1 GCAAACGACGCGATCCAGCCACAGGTAA-GTTGCCTGGTGACAGTATTGTTCTGTGTAAA 391 ************************ ** *** ** * *** * * consensus_7907#0 CTTAGTGGGGAGGCAAACATGGCAGCACAAGATGGCAATCACACTGCTACTGCAGCCGCA 1020 consensus_7907#1 ------AGGGCAGCAAACATTTATGTNCAA-----CAAT-ATACTACTCCCTCAGTA--- 436 *** ******** * *** **** * *** ** * *** consensus_7907#0 GCTTCTGGTTTTGCTGGAAGCAACGGTGAGGATGCCATCTTGCACAAGGAGGGCGATCCA 1080 consensus_7907#1 --TTTTAATGTA------------------------------------------------ 446 ** * * * consensus_7907#0 GTAGAGAATAATAGGCTGGGGCTGGCCAGCATTTTCTTCAATGACATGGCCTGGACCAGG 1140 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 AAAGCCCTGCAGCAGTTGCTCCGAAGCCTTGGTTTCCAAATCGGCACGAGAAAAACATGA 1200 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 AGTAAGCATCAGAGACGCTGACCTGCAGTTTTGGCTGATCACACGGTCTCGCGGTGCCTT 1260 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 CATTCAAAACTCGAAAGCTTCTACATGCTGCAAACCTACAAGGAACAAGTGTATTGAGAA 1320 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 CTGCAACAAAAAACCCTTTACGTTGCTAAGGTCTGCAACACCAGCAGTACTTGTTAGCAG 1380 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 TGCAAAAAGAGCAGGAAAGCTGTTAGCAGTGCAAGTATGTTTAGGACCAGTAATGACTAA 1440 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 GCTACCAAAAAACTCAATTAGTGAAATGCATATTGTGGTTAAATTTATCTGTTCGATAAA 1500 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 TTCTGTAGAATACATCTAGAATAAGAGCCAGGAAAAGCTGAAAGTCTGGAGATTTGGCAT 1560 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 AACATGTGCTCCATAACCACACGTATAAGCTCAACCACATGTACTTTAATCCACCAGATT 1620 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 TACGTTCATTTCTCATCATTTCAGTTGTAATGCTAATATGCTCTTGTTCTGGTGATCTAG 1680 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 TAAAAATGATGTCCATGATTTGCAAAGCTTTCTTTAATTTACATNAGAAAGCTGGCAGCA 1740 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 TTTAAAACATGTAAACGTGAAATATCAGCGTGGACATTCCACTTTAATTNAAAAAAAAAA 1800 consensus_7907#1 ------------------------------------------------------------ consensus_7907#0 AAA 1803 consensus_7907#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||