cluster # 791

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Oryza sativa
cluster # 791 cluster # 791 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_791#0 length = 405 sequences # 1

consensus_791#1 length = 337 sequences # 1

consensusID : consensus_791#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAATTACGGGCCGCTTAACCCGGGCCCCCCAAAAAAAAAAAAAAAAAAAAAAACCTGCCCCAAGGAACCAAAGCCCTTAATTGCCCCCTGACTCCTCCCAACCCGGGGGGTTATACCCCAAAAAACTGATTAACTGCCCCCGCCTAACGTTGGCAAAACCAATGATGCCAACCAAGGCCTTAGGGGTTGCCTTTTTTGCCCCCCCAAACCCCTTGAACCCTTGGGGGGGATCGGGGCCTCCAAACATGGGCAGTTTCCACATGGGCCAATACCTACCGGCATAATATCCGGGGGATCTGGGATTTTCACGGGAAACAAATCCCACCTTGGTGAACTCCAAACAAGGGC]

[+] EMBL CF299776             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAATTACGGGCCGCTTAACCCGGGCCCCCCAAAAAAAAAAAAAAAAAAAAAAACCTGCCCCAAGGAACCAAAGCCCTTAATTGCCCCCTGACTCCTCCCAACCCGGGGGGTTATACCCCAAAAAACTGATTAACTGCCCCCGCCTAACGTTGGCAAAACCAATGATGCCAACCAAGGCCTTAGGGGTTGCCTTTTTTGCCCCCCCAAACCCCTTGAACCCTTGGGGGGGATCGGGGCCTCCAAACATGGGCAGTTTCCACATGGGCCAATACCTACCGGCATAATATCCGGGGGATCTGGGATTTTCACGGGAAACAAATCCCACCTTGGTGAACTCCAAACAAGGGC]




>consensus_791#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAA
TTACGGGCCGCTTAACCCGGGCCCCCCAAAAAAAAAAAAAAAAAAAAAAACCTGCCCCAA
GGAACCAAAGCCCTTAATTGCCCCCTGACTCCTCCCAACCCGGGGGGTTATACCCCAAAA
AACTGATTAACTGCCCCCGCCTAACGTTGGCAAAACCAATGATGCCAACCAAGGCCTTAG
GGGTTGCCTTTTTTGCCCCCCCAAACCCCTTGAACCCTTGGGGGGGATCGGGGCCTCCAA
ACATGGGCAGTTTCCACATGGGCCAATACCTACCGGCATAATATCCGGGGGATCTGGGAT
TTTCACGGGAAACAAATCCCACCTTGGTGAACTCCAAACAAGGGC

consensusID : consensus_791#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence

                              [AGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAGAAAACTCTTGCAACAACCGGAGGGCGGAACCCCAAAAAACAATTACCTGCCGCTTTACCCGGGCCCCCCAAAAAAAAAGAAAAAGAAAGAACCTGCCCCAAGGGACCAAAGCGCTTAATTGGCGCCTGAATTCTTGCAACCCGGGGGGTTATACCCCAAGAAACTGATTAACTGGCCCCGCCTAACGTTGGCAAAACCCATGATGCCAACCAAAGGCTTAGGGGTTGCCTTTTTTGGCTCCTCGAGCTCCTTGAACACTTGGGGGGGATTGGGGCCT]

[+] EMBL CF299885             [AGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAGAAAACTCTTGCAACAACCGGAGGGCGGAACCCCAAAAAACAATTACCTGCCGCTTTACCCGGGCCCCCCAAAAAAAAAGAAAAAGAAAGAACCTGCCCCAAGGGACCAAAGCGCTTAATTGGCGCCTGAATTCTTGCAACCCGGGGGGTTATACCCCAAGAAACTGATTAACTGGCCCCGCCTAACGTTGGCAAAACCCATGATGCCAACCAAAGGCTTAGGGGTTGCCTTTTTTGGCTCCTCGAGCTCCTTGAACACTTGGGGGGGATTGGGGCCT]




>consensus_791#1
AGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAG
AAAACTCTTGCAACAACCGGAGGGCGGAACCCCAAAAAACAATTACCTGCCGCTTTACCC
GGGCCCCCCAAAAAAAAAGAAAAAGAAAGAACCTGCCCCAAGGGACCAAAGCGCTTAATT
GGCGCCTGAATTCTTGCAACCCGGGGGGTTATACCCCAAGAAACTGATTAACTGGCCCCG
CCTAACGTTGGCAAAACCCATGATGCCAACCAAAGGCTTAGGGGTTGCCTTTTTTGGCTC
CTCGAGCTCCTTGAACACTTGGGGGGGATTGGGGCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_791#0      -----TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT----- 50
consensus_791#1      AGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAG 60
                          **************************************************     

consensus_791#0      -----TTTTG---------------------------AACAATTACGGGCCGCTTAACCC 78
consensus_791#1      AAAACTCTTGCAACAACCGGAGGGCGGAACCCCAAAAAACAATTACCTGCCGCTTTACCC 120
                          * ***                           *********  ******* ****

consensus_791#0      GGGCCCCCCAAAAAAAAAAAAAAAAAAAAAAACCTGCCCCAAGGAACCAAAGCCCTTAAT 138
consensus_791#1      GGGCCCCCCAAAAAAAAAGAAAAAGAAAGAA-CCTGCCCCAAGGGACCAAAGCGCTTAAT 179
                     ****************** ***** *** ** ************ ******** ******

consensus_791#0      TGCCCCCTGACTCCTCCCAACCCGGGGGGTTATACCCCAAAAAACTGATTAACTGCCCCC 198
consensus_791#1      TGGCGCCTGAATTCTTGCAACCCGGGGGGTTATACCCCAAGAAACTGATTAACTGGCCCC 239
                     ** * ***** * **  *********************** ************** ****

consensus_791#0      GCCTAACGTTGGCAAAACCAATGATGCCAACCAAGGCCTTAGGGGTTGCCTTTTTTGCCC 258
consensus_791#1      GCCTAACGTTGGCAAAACCCATGATGCCAACCAAAGGCTTAGGGGTTGCCTTTTTTGGCT 299
                     ******************* ************** * ******************** * 

consensus_791#0      CCCCAAACCCCTTGAACCCTTGGGGGGGATCGGGGCCTCCAAACATGGGCAGTTTCCACA 318
consensus_791#1      CCTCGAGCTCCTTGAACACTTGGGGGGGATTGGGGCCT---------------------- 337
                     ** * * * ******** ************ *******                      

consensus_791#0      TGGGCCAATACCTACCGGCATAATATCCGGGGGATCTGGGATTTTCACGGGAAACAAATC 378
consensus_791#1      ------------------------------------------------------------
                                                                                 

consensus_791#0      CCACCTTGGTGAACTCCAAACAAGGGC 405
consensus_791#1      ---------------------------