These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7915#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 968 fasta sequence [TTTTTTTTTTTTTTTTTGAAATGGGAGCAATTGCGATTCCACCATCTGGGAATCGAGCTACCAAGTTAAATCAGTTGATATCTCCATTTAAAAATCA-GTTCAAGTTGGACAGGCAACACCAATATCACAACGAGCAGTCACC-AGACTATATGTTTGGCCTTCTTTTACGACTGCTACTTAATTCCATCCACCCATGCATTTCAATTCCTCCAATTTAAATGAATGAACCATGTACTATATCAGAAGACCAAGAGCAAATTTAACGAGTCACAACTAAGGAAGAGCTAAGTTTGCTGATTCTCTTTTTTCTTTTTCTATACTGGATAACTTT-GTACAGGC-TTTCATC-GGATGA-TCCCTGCA-TGCC-ATCATATTCCCCGCTATTTGATCAGATTGATACTGAAGGAGAACTTGTGCCATT-AATTTGATCTACACTTCTGCTTTCAGGGAATATAATAATTCCAGATCCCCATGGCCAGAGGCAAGTGAAGGGTACAGCTCTGAAAGAGATTTCTCTTCCTCCAATCTTTCTAAGGCGTCATGATTCAGTTTTATCTCATCTGCACTAGTATCTATGGATGCAAAGCATCCATTGTTGGGGTTCTTCCTGATGAATATCTCCACTTCTTTCGCATGGCGAGACAATTGGAGAGCAACAAACTGGCAAAGATGGCGAACAGAGAATGTCGGTTGGCAACTGAGATAGGGCTTCTCCAATTTAGGCATGCTTTGTCCATTAAGTGGAAGTAGAACAAGATATAAGTTGAACTTATTATCGAATTCATCGGTATTACGTAGGTATTCAACCAACTTGGTAACACGACCACCCTTTGCCATCCTTCCACTGGAACCACCAGAATTGCCATGCCGGGTTTGACTGCGGGTGCCATTTTTTCCCCAGGCAAGCATCTCTCCGCGTAGTGGAGAAGTACTCATGATATCTCTGCCACTTCCTAAGTCATCAATATCCT] [-] EMBL C99502 [TTTTTTTTTTTTTTTTTGAAATGGGAGCAATTGCGATTCCACCATCTGGGAATCGAGCTACCAAGTTAAATCAGTTGATATCTCCATTTAAAAATCA GTTCAAGTTGGACAGGCAACACCAATATCACAACGAGCAGTCACC AGACTATATGTTTGGCCTTCTTTTACGACTGCTACTTAATTCCATCCACCCATGCATTTCAATTCCTCCAATTTAAATGAATGAACCATGTACTATATCAGAAGACCAAGAGCAAATTTAACGAGTCACAACTAAGGAAGAGCTAAGTTTGCTGATTCTCTTTTTTCTTTTTCTATACTGGATAACTTT GTACAGGC TTTCATC GGATGA TCCCTGCA TGCC ATCATATTCCCCGCTATTTGATCNGATTGATACTGAAGGAGAACTTGTGCCATTAAATTTGATCTACACTTCTGCTTTCAGGGg ] [-] EMBL AU163074 [ tttTTAAATCAGTTGATATCTCCATTTAAAAATCA GTTCAAGTTGGACAGGCAACACCAATATCACAACGAGCAGTCACC AGACTATATGTTTGGCCTTCTTTTACGACTGCTACTTAATTCCATCCACCCATGCATTTCAATTCCTCCAATTTAAATGAATGAACCATGTACTATATCAGAAGACCAAGAGCAAATTTAACGAGTCACAACTAAGGAAGAGCTAAGTTTGCTGATTCTCTNTTTTCNTTTTCTATACTGGATAACTTTGGTACAGGCTTTTCATCGGGATGANTCCCTGCATTGCCAATCATATTCCCCGCTATTTGga ] [-] EMBL C73723 [ ATCAGGTTCAAGTTGGACAGGCAACNCCAATATCACAACGAGCAGTCACCAAGACTATATGTTTGGCCTTCTTTTACGACTGCTACTTAATTCCATCCACCCATGCATTTCAATTCCTCCAATTTAAATGAATGAACCATGTACTATATCAGAAGACCAAGAGCAAATTTAACGAGTCACAACTAAGGAAGAGCTAAGTTTGCTGATTCTCTTTTTTCTTTTTCTATACTGGATAACTTT GTACAGGC TTTCATC GGATGA TCCCTGCA TGCC ATCATATTCCCCGCTATTTGATCAGATTGATACTGAAGGAGAACTTGTGCCATT AATTTGATCTACACTTCTGCTTTCAGGGAATATAATAA ] [+] EMBL CB663746 [ AACCATGTACTATATCAGAAGACCAAGAGCAAATTTAACGAGTCACAACTAAGGAAGAGCTAAGTTTGCTGATTCTCTTTTTTCTTTTTCTATACTGGATAACTTT GTACAGGC TTTCATC GGATGA TCCCTGCA TGCC ATCATATTCCCCGCTATTTGATCAGATTGATACTGAAGGAGAACTTGTGCCATT AATTTGATCTACACTTCTGCTTTCAGGGAATATAATAATTCCAGATCCCCATGGCCAGAGGCAAGTGAAGGGTACAGCTCTGAAAGAGATTTCTCTTCCTCCAATCTTTCTAAGGCGTCATGATTCAGTTTTATCTCATCTGCACTAGTATCTATGGATGCAAAGCATCCATTGTTGGGGTTCTTCCTGATGAATATCTCCACTTCTTTCGCATGGCGAGACAATTGGAGAGCAACAAACTGGCAAAGATGGCGAACAGAGAATGTCGGTTGGCAACTGAGATAGGGCTTCTCCAATTTAGGCATGCTTTGTCCATTAAGTGGAAGTAGAACAAGATATAAGTTGAACTTATTATCGAATTCATCGGTATTACGTAGGTATTCAACCAACTTGGTAACACGACCACCCTTTGCCATCCTTCCACTGGAACCACCAGAATTGCCATGCCGGGTTTGACTGCGGGTGCCATTTTTTCCCCAGGCAAGCATCTCTCCGCGTAGTGGAGAAGTACTCATGATATCTCTGCCACTTCCTAAGTCATCAATATCCT] consensusID : consensus_7915#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [TTTTTTTTTTTTTTTTTTTTGCTACTTAATTCCATCCACCCATGCATTTCAATTCCTCCAATTTAAATGAATGAACCATGTACTATATCAAAAGACCAAGAGCAAATTTAACGAGTCACAACTAAGGAAGAGCTAAGTTTGCTGATTCTCTTTTTTCTTTTTCTATACGGGATAACTTTGTACAGGCTTTCATCGGATGATCCCTGCATGCCATCATATTCCCCGCTATTTGATCAGATTGATACTGAAGGAGAACTTGTGCCATTAATTTGATCTACACTTCTGCTTTCAGGGAATATAATAATTCCAGATCCCCATGGCCAGAGGCAAGTGAAGGGTACAGCTCTAAAAGAGATTTCTCTTCCTCCAATCTTTCTAAGGCGTCATGATTCAGTTTTATCTCATCTGCACTAGTATCTATGGATGCAAAGCATCCATTGGTTGGGGTTCTTCCTGATGAATATCTCCACTTCTTTCGCATGGCGAGACAATTGGAGAGCAACAAACTGGCAAAGATGGCGAACAGAGAATGTCGGTTGGCAACTGAGATAGGGCTTCTCCAATTTAGGCATGCTTTGTCCATTAAGTGGAAGTAGAACAAGATATAAGTTGAACTTATTATCGAATTCATCGGTATTACGTAGGTATTCAACCAACTTGGTAACA] [+] EMBL CA762056 [TTTTTTTTTTTTTTTTTTTTGCTACTTAATTCCATCCACCCATGCATTTCAATTCCTCCAATTTAAATGAATGAACCATGTACTATATCAAAAGACCAAGAGCAAATTTAACGAGTCACAACTAAGGAAGAGCTAAGTTTGCTGATTCTCTTTTTTCTTTTTCTATACGGGATAACTTTGTACAGGCTTTCATCGGATGATCCCTGCATGCCATCATATTCCCCGCTATTTGATCAGATTGATACTGAAGGAGAACTTGTGCCATTAATTTGATCTACACTTCTGCTTTCAGGGAATATAATAATTCCAGATCCCCATGGCCAGAGGCAAGTGAAGGGTACAGCTCTAAAAGAGATTTCTCTTCCTCCAATCTTTCTAAGGCGTCATGATTCAGTTTTATCTCATCTGCACTAGTATCTATGGATGCAAAGCATCCATTGGTTGGGGTTCTTCCTGATGAATATCTCCACTTCTTTCGCATGGCGAGACAATTGGAGAGCAACAAACTGGCAAAGATGGCGAACAGAGAATGTCGGTTGGCAACTGAGATAGGGCTTCTCCAATTTAGGCATGCTTTGTCCATTAAGTGGAAGTAGAACAAGATATAAGTTGAACTTATTATCGAATTCATCGGTATTACGTAGGTATTCAACCAACTTGGTAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7915#0 TTTTTTTTTTTTTTTTTGAAATGGGAGCAATTGCGATTCCACCATCTGGGAATCGAGCTA 60 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 CCAAGTTAAATCAGTTGATATCTCCATTTAAAAATCAGTTCAAGTTGGACAGGCAACACC 120 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 AATATCACAACGAGCAGTCACCAGACTATATGTTTGGCCTTCTTTTACGACTGCTACTTA 180 consensus_7915#1 --------------------------------TTTTTTTTTTTTTTTTTTTTGCTACTTA 28 *** ** **** ********* consensus_7915#0 ATTCCATCCACCCATGCATTTCAATTCCTCCAATTTAAATGAATGAACCATGTACTATAT 240 consensus_7915#1 ATTCCATCCACCCATGCATTTCAATTCCTCCAATTTAAATGAATGAACCATGTACTATAT 88 ************************************************************ consensus_7915#0 CAGAAGACCAAGAGCAAATTTAACGAGTCACAACTAAGGAAGAGCTAAGTTTGCTGATTC 300 consensus_7915#1 CAAAAGACCAAGAGCAAATTTAACGAGTCACAACTAAGGAAGAGCTAAGTTTGCTGATTC 148 ** ********************************************************* consensus_7915#0 TCTTTTTTCTTTTTCTATACTGGATAACTTTGTACAGGCTTTCATCGGATGATCCCTGCA 360 consensus_7915#1 TCTTTTTTCTTTTTCTATACGGGATAACTTTGTACAGGCTTTCATCGGATGATCCCTGCA 208 ******************** *************************************** consensus_7915#0 TGCCATCATATTCCCCGCTATTTGATCAGATTGATACTGAAGGAGAACTTGTGCCATTAA 420 consensus_7915#1 TGCCATCATATTCCCCGCTATTTGATCAGATTGATACTGAAGGAGAACTTGTGCCATTAA 268 ************************************************************ consensus_7915#0 TTTGATCTACACTTCTGCTTTCAGGGAATATAATAATTCCAGATCCCCATGGCCAGAGGC 480 consensus_7915#1 TTTGATCTACACTTCTGCTTTCAGGGAATATAATAATTCCAGATCCCCATGGCCAGAGGC 328 ************************************************************ consensus_7915#0 AAGTGAAGGGTACAGCTCTGAAAGAGATTTCTCTTCCTCCAATCTTTCTAAGGCGTCATG 540 consensus_7915#1 AAGTGAAGGGTACAGCTCTAAAAGAGATTTCTCTTCCTCCAATCTTTCTAAGGCGTCATG 388 ******************* **************************************** consensus_7915#0 ATTCAGTTTTATCTCATCTGCACTAGTATCTATGGATGCAAAGCATCCATTG-TTGGGGT 599 consensus_7915#1 ATTCAGTTTTATCTCATCTGCACTAGTATCTATGGATGCAAAGCATCCATTGGTTGGGGT 448 **************************************************** ******* consensus_7915#0 TCTTCCTGATGAATATCTCCACTTCTTTCGCATGGCGAGACAATTGGAGAGCAACAAACT 659 consensus_7915#1 TCTTCCTGATGAATATCTCCACTTCTTTCGCATGGCGAGACAATTGGAGAGCAACAAACT 508 ************************************************************ consensus_7915#0 GGCAAAGATGGCGAACAGAGAATGTCGGTTGGCAACTGAGATAGGGCTTCTCCAATTTAG 719 consensus_7915#1 GGCAAAGATGGCGAACAGAGAATGTCGGTTGGCAACTGAGATAGGGCTTCTCCAATTTAG 568 ************************************************************ consensus_7915#0 GCATGCTTTGTCCATTAAGTGGAAGTAGAACAAGATATAAGTTGAACTTATTATCGAATT 779 consensus_7915#1 GCATGCTTTGTCCATTAAGTGGAAGTAGAACAAGATATAAGTTGAACTTATTATCGAATT 628 ************************************************************ consensus_7915#0 CATCGGTATTACGTAGGTATTCAACCAACTTGGTAACACGACCACCCTTTGCCATCCTTC 839 consensus_7915#1 CATCGGTATTACGTAGGTATTCAACCAACTTGGTAACA---------------------- 666 ************************************** consensus_7915#0 CACTGGAACCACCAGAATTGCCATGCCGGGTTTGACTGCGGGTGCCATTTTTTCCCCAGG 899 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 CAAGCATCTCTCCGCGTAGTGGAGAAGTACTCATGATATCTCTGCCACTTCCTAAGTCAT 959 consensus_7915#1 ------------------------------------------------------------ consensus_7915#0 CAATATCCT 968 consensus_7915#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||