These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7917#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 513 fasta sequence [TCTCTGTCCTGCTCAATCTCTCCCCACATCCCCACATTTGGTGGTAGCGGAGCAAACGGGAGAAGGCGGCATACACCTCATCTCCCCTCGGCGGCACCTCCTTTCAACAGTGCCTCCCCTAAGTGACAGGGCGAGCGGGAGGAGGCGGCATCCACCTTGCCTCTCCTCGGCGACGCCTCCCCACGGCCTTCCCTTCTCCTTGTGCGGTGGCAGTAGCAGCCTCTCCTTTTCCCATGTGTGGAGAGATCTTTCCCATTTGAAGCCTTGTTCTTCCCCCTCCTTTTCCGGCGACGTGTGGCAGCTTGCGGCAACCTCGTCCCTCCTGGCTCAGAGGTGGCTTGCTCGATGGCGGCAAGCGACGACACTTTCCCAGTGAGCAACAGCAGC-GGGGGAAGTTCTCCACTATAATTAATTGGTGTATTTTTTTTATCTAGTTTTGAAATTCTGTGATGTGAACTTTTAATGAATGTTTGATTCTATGGTGTGAACTTGTCGATGACAAAAAAACAGGGG] [+] EMBL C27829 [TCTCTGTCCTGCTCAATCTCTCCCCACATCCCCACATTTGGTGGTAGCG GCAAACGGGAGAAGGCGGCATACACCTCATCTCCCCTCGGCGGCACCTCCTTTCAACAGTGCCTCCCCTAAGTGACAGGGCGAGCGGGAGGAGGCGGCATCCACCTTGCCTCTCCTCGGCGACG CTCCCCACGGCCTTCCCTTCTCCTTGTGCGGTGGCAGTAGCAGCCTCTCCTTTTCCCATGTGTGGAGAGATCTTTCCCATTTGAAGCCTTGTTCTTCCCCCTCCTTTTCCGGCGACGTGTGGCAGCTTGCGGCAACCTCGTNCCTACTGGCTCAGAGGTTGCTTGCTCGATGGCGGCAAG GACGACACTTT CCAGTGAGCAACAG AGC GGGGGAAGTT TTCACTATAA TAATTGGNGTATTTTTTTAAT TAGTTT NAA TCTGTAATG ] [+] EMBL CF302684 [ CAATCTCTCCCCACATCCCCACATTTGGTGGTAGCGGAGCAAACGGGAGAAGGCGGCATACACCTCATCTCCCCTCGGCGGCACCTCCTTTCAACAGTGCCTCCCCTAAGTGACAGGGCGAGCGGGAGGAGGCGGCATCCACCTTGCCTCTCCTCGGCGACGCCTCCCCACGGCCTTCCCTTCTCCTTGTGCGGTGGCAGTAGCAGCCTCTCCTTTTCCCATGTGGGGAGAGATCTTTCCCATTTGAAGCCTTGTTCTTCCCCCTCCTTTTCCGGCGACGTGTGGCAGCTTGCGGCAACCTCGTCCCTCCTGGCTCAGAGGTGGCTTGCTCGATGGCGGCAAGCGACGACACTTTCCCAGTGAGCAACAGCAGCGGGGGGAAGTTCTCCACTATAATTAATTGGTGTATTTTTTTTATCTAGTTTTGAAATTCTGTGATGTGAACTTTTAATGAATGTTTGATTCTATGGTGTG ] [+] EMBL CB680407 [ CTCTCCCCACATCCCCACATTTGGTGGTAGCGGAGCAAACGGGAGAAGGCGGCATACACCTCATCTCCCCTCGGCGGCACCTCCTTTCAACAGTGCCTCCCCTAAGTGACAGGGCGAGCGGGAGGAGGCGGCATCCACCTTGCCTCTCCTCGGCGACGCCTCCCCACGGCCTTCCCTTCTCCTTGTGCGGTGGCAGTAGCAGCCTCTCCTTTTCCCATGTGTGGAGAGATCTTTCCCATTTGAAGCCTTGTTCTTCCCCCTCCTTTTCCGGCGACGTGTGGCAGCTTGCGGCAACCTCGTCCCTCCTGGCTCAGAGGTGGCTTGCTCGATGGCGGCAAGCGACGACACTTTCCCAGTGAGCAACAGCAGC GGGGGAAGTTCTCCACTATAATTAATTGGTGTATTTTTTTTATCTAGTTTTGAAATTCTGTGATGTGAACTTTTAATGAATGTTTGATTCTATGGTGTGAACTTGTCGATGACAAAAAAACAGGGG] [+] EMBL CF300490 [ TAGCGGAGCAAACGGGAGAAGGCGGCATACACCTCATCTCCCCTCGGCGGCACCTCCTTT AACAGTGCCTCCCCTAAGTGACAGGGCGAGCGGGAGGAGGCGGCATCCACCTTGCCTCTCCTCGGCGACGCCTCCCCACGGCCTTCCCTTCTCCTTGTGCGGTGGCAGTAGCAGCCTCTCCTTTTCCCATGTGTGGAGAGATCTTTCCCATTTGAAGCCTTGTTCTTCCCCCTCCTTTTCCGGCGACGTGTGGCAGCTTGCGGCA ] consensusID : consensus_7917#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence [CTCTGTCCTGCTCAATCTCTCCCCACATCCCCACATTTGGTGGTAGCGGAGCAAACGGGAGAAGGCGGCATACACCTCATCTCCCCTCGGCGGCACCTCCTTTCAACAGTGCCTCCCCTAAGTGACAGGGCGAGCGGGAGGAGCGGCATCCACCTTGCCTCTCCTCGGCGACGCCTCCCCACGGCCTTCCCTTCTCCTTGTGCGGTGGCAGTAGCAGCCTCTCCTTTTCCCATGTGTGGAGAGATCTTTCCCATTTGAAGCCTTGTTCTTCCCCCTCCTTTTCCGGCGACGTGTGGCAGCTTGCGGCAACCTCGTCCCTCCTGGCTCANAGGTGGCTTGCTCGATGGCGGCAAGCGACGACACTTTCCCAGTGAGCAACAGCAGCGGGGGAAGTTCTCCACTATAATTAATTGGTGTATTTTTTTTATCTAGTTTTGAAATTCTGTGATGTGAACTTTTAATGAATGTTTGATTCTATGGTGTGAAAAAAAAAAAA] [+] EMBL AU100880 [CTCTGTCCTGCTCAATCTCTCCCCACATCCCCACATTTGGTGGTAGCGGAGCAAACGGGAGAAGGCGGCATACACCTCATCTCCCCTCGGCGGCACCTCCTTTCAACAGTGCCTCCCCTAAGTGACAGGGCGAGCGGGAGGAGCGGCATCCACCTTGCCTCTCCTCGGCGACGCCTCCCCACGGCCTTCCCTTCTCCTTGTGCGGTGGCAGTAGCAGCCTCTCCTTTTCCCATGTGTGGAGAGATCTTTCCCATTTGAAGCCTTGTTCTTCCCCCTCCTTTTCCGGCGACGTGTGGCAGCTTGCGGCAACCTCGTCCCTCCTGGCTCANAGGTGGCTTGCTCGATGGCGGCAAGCGACGACACTTTCCCAGTGAGCAACAGCAGCGGGGGAAGTTCTCCACTATAATTAATTGGTGTATTTTTTTTATCTAGTTTTGAAATTCTGTGATGTGAACTTTTAATGAATGTTTGATTCTATGGTGTGAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7917#0 TCTCTGTCCTGCTCAATCTCTCCCCACATCCCCACATTTGGTGGTAGCGGAGCAAACGGG 60 consensus_7917#1 -CTCTGTCCTGCTCAATCTCTCCCCACATCCCCACATTTGGTGGTAGCGGAGCAAACGGG 59 *********************************************************** consensus_7917#0 AGAAGGCGGCATACACCTCATCTCCCCTCGGCGGCACCTCCTTTCAACAGTGCCTCCCCT 120 consensus_7917#1 AGAAGGCGGCATACACCTCATCTCCCCTCGGCGGCACCTCCTTTCAACAGTGCCTCCCCT 119 ************************************************************ consensus_7917#0 AAGTGACAGGGCGAGCGGGAGGAGGCGGCATCCACCTTGCCTCTCCTCGGCGACGCCTCC 180 consensus_7917#1 AAGTGACAGGGCGAGCGGGAGGAG-CGGCATCCACCTTGCCTCTCCTCGGCGACGCCTCC 178 ************************ *********************************** consensus_7917#0 CCACGGCCTTCCCTTCTCCTTGTGCGGTGGCAGTAGCAGCCTCTCCTTTTCCCATGTGTG 240 consensus_7917#1 CCACGGCCTTCCCTTCTCCTTGTGCGGTGGCAGTAGCAGCCTCTCCTTTTCCCATGTGTG 238 ************************************************************ consensus_7917#0 GAGAGATCTTTCCCATTTGAAGCCTTGTTCTTCCCCCTCCTTTTCCGGCGACGTGTGGCA 300 consensus_7917#1 GAGAGATCTTTCCCATTTGAAGCCTTGTTCTTCCCCCTCCTTTTCCGGCGACGTGTGGCA 298 ************************************************************ consensus_7917#0 GCTTGCGGCAACCTCGTCCCTCCTGGCTCAGAGGTGGCTTGCTCGATGGCGGCAAGCGAC 360 consensus_7917#1 GCTTGCGGCAACCTCGTCCCTCCTGGCTCANAGGTGGCTTGCTCGATGGCGGCAAGCGAC 358 ****************************** ***************************** consensus_7917#0 GACACTTTCCCAGTGAGCAACAGCAGCGGGGGAAGTTCTCCACTATAATTAATTGGTGTA 420 consensus_7917#1 GACACTTTCCCAGTGAGCAACAGCAGCGGGGGAAGTTCTCCACTATAATTAATTGGTGTA 418 ************************************************************ consensus_7917#0 TTTTTTTTATCTAGTTTTGAAATTCTGTGATGTGAACTTTTAATGAATGTTTGATTCTAT 480 consensus_7917#1 TTTTTTTTATCTAGTTTTGAAATTCTGTGATGTGAACTTTTAATGAATGTTTGATTCTAT 478 ************************************************************ consensus_7917#0 GGTGTGAACTTGTCGATGACAAAAAAACAGGGG 513 consensus_7917#1 GGTGTGAA---------AAAAAAAAAA------ 496 ******** * ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||