cluster # 7917

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Oryza sativa
cluster # 7917 cluster # 7917 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7917#0 length = 513 sequences # 4

consensus_7917#1 length = 496 sequences # 1

consensusID : consensus_7917#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 513
fasta sequence

                              [TCTCTGTCCTGCTCAATCTCTCCCCACATCCCCACATTTGGTGGTAGCGGAGCAAACGGGAGAAGGCGGCATACACCTCATCTCCCCTCGGCGGCACCTCCTTTCAACAGTGCCTCCCCTAAGTGACAGGGCGAGCGGGAGGAGGCGGCATCCACCTTGCCTCTCCTCGGCGACGCCTCCCCACGGCCTTCCCTTCTCCTTGTGCGGTGGCAGTAGCAGCCTCTCCTTTTCCCATGTGTGGAGAGATCTTTCCCATTTGAAGCCTTGTTCTTCCCCCTCCTTTTCCGGCGACGTGTGGCAGCTTGCGGCAACCTCGTCCCTCCTGGCTCAGAGGTGGCTTGCTCGATGGCGGCAAGCGACGACACTTTCCCAGTGAGCAACAGCAGC-GGGGGAAGTTCTCCACTATAATTAATTGGTGTATTTTTTTTATCTAGTTTTGAAATTCTGTGATGTGAACTTTTAATGAATGTTTGATTCTATGGTGTGAACTTGTCGATGACAAAAAAACAGGGG]

[+] EMBL C27829               [TCTCTGTCCTGCTCAATCTCTCCCCACATCCCCACATTTGGTGGTAGCG  GCAAACGGGAGAAGGCGGCATACACCTCATCTCCCCTCGGCGGCACCTCCTTTCAACAGTGCCTCCCCTAAGTGACAGGGCGAGCGGGAGGAGGCGGCATCCACCTTGCCTCTCCTCGGCGACG CTCCCCACGGCCTTCCCTTCTCCTTGTGCGGTGGCAGTAGCAGCCTCTCCTTTTCCCATGTGTGGAGAGATCTTTCCCATTTGAAGCCTTGTTCTTCCCCCTCCTTTTCCGGCGACGTGTGGCAGCTTGCGGCAACCTCGTNCCTACTGGCTCAGAGGTTGCTTGCTCGATGGCGGCAAG GACGACACTTT CCAGTGAGCAACAG AGC GGGGGAAGTT TTCACTATAA TAATTGGNGTATTTTTTTAAT TAGTTT  NAA TCTGTAATG                                                             ]
[+] EMBL CF302684             [             CAATCTCTCCCCACATCCCCACATTTGGTGGTAGCGGAGCAAACGGGAGAAGGCGGCATACACCTCATCTCCCCTCGGCGGCACCTCCTTTCAACAGTGCCTCCCCTAAGTGACAGGGCGAGCGGGAGGAGGCGGCATCCACCTTGCCTCTCCTCGGCGACGCCTCCCCACGGCCTTCCCTTCTCCTTGTGCGGTGGCAGTAGCAGCCTCTCCTTTTCCCATGTGGGGAGAGATCTTTCCCATTTGAAGCCTTGTTCTTCCCCCTCCTTTTCCGGCGACGTGTGGCAGCTTGCGGCAACCTCGTCCCTCCTGGCTCAGAGGTGGCTTGCTCGATGGCGGCAAGCGACGACACTTTCCCAGTGAGCAACAGCAGCGGGGGGAAGTTCTCCACTATAATTAATTGGTGTATTTTTTTTATCTAGTTTTGAAATTCTGTGATGTGAACTTTTAATGAATGTTTGATTCTATGGTGTG                           ]
[+] EMBL CB680407             [                 CTCTCCCCACATCCCCACATTTGGTGGTAGCGGAGCAAACGGGAGAAGGCGGCATACACCTCATCTCCCCTCGGCGGCACCTCCTTTCAACAGTGCCTCCCCTAAGTGACAGGGCGAGCGGGAGGAGGCGGCATCCACCTTGCCTCTCCTCGGCGACGCCTCCCCACGGCCTTCCCTTCTCCTTGTGCGGTGGCAGTAGCAGCCTCTCCTTTTCCCATGTGTGGAGAGATCTTTCCCATTTGAAGCCTTGTTCTTCCCCCTCCTTTTCCGGCGACGTGTGGCAGCTTGCGGCAACCTCGTCCCTCCTGGCTCAGAGGTGGCTTGCTCGATGGCGGCAAGCGACGACACTTTCCCAGTGAGCAACAGCAGC GGGGGAAGTTCTCCACTATAATTAATTGGTGTATTTTTTTTATCTAGTTTTGAAATTCTGTGATGTGAACTTTTAATGAATGTTTGATTCTATGGTGTGAACTTGTCGATGACAAAAAAACAGGGG]
[+] EMBL CF300490             [                                            TAGCGGAGCAAACGGGAGAAGGCGGCATACACCTCATCTCCCCTCGGCGGCACCTCCTTT AACAGTGCCTCCCCTAAGTGACAGGGCGAGCGGGAGGAGGCGGCATCCACCTTGCCTCTCCTCGGCGACGCCTCCCCACGGCCTTCCCTTCTCCTTGTGCGGTGGCAGTAGCAGCCTCTCCTTTTCCCATGTGTGGAGAGATCTTTCCCATTTGAAGCCTTGTTCTTCCCCCTCCTTTTCCGGCGACGTGTGGCAGCTTGCGGCA                                                                                                                                                                                                            ]




>consensus_7917#0
TCTCTGTCCTGCTCAATCTCTCCCCACATCCCCACATTTGGTGGTAGCGGAGCAAACGGG
AGAAGGCGGCATACACCTCATCTCCCCTCGGCGGCACCTCCTTTCAACAGTGCCTCCCCT
AAGTGACAGGGCGAGCGGGAGGAGGCGGCATCCACCTTGCCTCTCCTCGGCGACGCCTCC
CCACGGCCTTCCCTTCTCCTTGTGCGGTGGCAGTAGCAGCCTCTCCTTTTCCCATGTGTG
GAGAGATCTTTCCCATTTGAAGCCTTGTTCTTCCCCCTCCTTTTCCGGCGACGTGTGGCA
GCTTGCGGCAACCTCGTCCCTCCTGGCTCAGAGGTGGCTTGCTCGATGGCGGCAAGCGAC
GACACTTTCCCAGTGAGCAACAGCAGCGGGGGAAGTTCTCCACTATAATTAATTGGTGTA
TTTTTTTTATCTAGTTTTGAAATTCTGTGATGTGAACTTTTAATGAATGTTTGATTCTAT
GGTGTGAACTTGTCGATGACAAAAAAACAGGGG

consensusID : consensus_7917#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 496
fasta sequence

                              [CTCTGTCCTGCTCAATCTCTCCCCACATCCCCACATTTGGTGGTAGCGGAGCAAACGGGAGAAGGCGGCATACACCTCATCTCCCCTCGGCGGCACCTCCTTTCAACAGTGCCTCCCCTAAGTGACAGGGCGAGCGGGAGGAGCGGCATCCACCTTGCCTCTCCTCGGCGACGCCTCCCCACGGCCTTCCCTTCTCCTTGTGCGGTGGCAGTAGCAGCCTCTCCTTTTCCCATGTGTGGAGAGATCTTTCCCATTTGAAGCCTTGTTCTTCCCCCTCCTTTTCCGGCGACGTGTGGCAGCTTGCGGCAACCTCGTCCCTCCTGGCTCANAGGTGGCTTGCTCGATGGCGGCAAGCGACGACACTTTCCCAGTGAGCAACAGCAGCGGGGGAAGTTCTCCACTATAATTAATTGGTGTATTTTTTTTATCTAGTTTTGAAATTCTGTGATGTGAACTTTTAATGAATGTTTGATTCTATGGTGTGAAAAAAAAAAAA]

[+] EMBL AU100880             [CTCTGTCCTGCTCAATCTCTCCCCACATCCCCACATTTGGTGGTAGCGGAGCAAACGGGAGAAGGCGGCATACACCTCATCTCCCCTCGGCGGCACCTCCTTTCAACAGTGCCTCCCCTAAGTGACAGGGCGAGCGGGAGGAGCGGCATCCACCTTGCCTCTCCTCGGCGACGCCTCCCCACGGCCTTCCCTTCTCCTTGTGCGGTGGCAGTAGCAGCCTCTCCTTTTCCCATGTGTGGAGAGATCTTTCCCATTTGAAGCCTTGTTCTTCCCCCTCCTTTTCCGGCGACGTGTGGCAGCTTGCGGCAACCTCGTCCCTCCTGGCTCANAGGTGGCTTGCTCGATGGCGGCAAGCGACGACACTTTCCCAGTGAGCAACAGCAGCGGGGGAAGTTCTCCACTATAATTAATTGGTGTATTTTTTTTATCTAGTTTTGAAATTCTGTGATGTGAACTTTTAATGAATGTTTGATTCTATGGTGTGAAAAAAAAAAAA]




>consensus_7917#1
CTCTGTCCTGCTCAATCTCTCCCCACATCCCCACATTTGGTGGTAGCGGAGCAAACGGGA
GAAGGCGGCATACACCTCATCTCCCCTCGGCGGCACCTCCTTTCAACAGTGCCTCCCCTA
AGTGACAGGGCGAGCGGGAGGAGCGGCATCCACCTTGCCTCTCCTCGGCGACGCCTCCCC
ACGGCCTTCCCTTCTCCTTGTGCGGTGGCAGTAGCAGCCTCTCCTTTTCCCATGTGTGGA
GAGATCTTTCCCATTTGAAGCCTTGTTCTTCCCCCTCCTTTTCCGGCGACGTGTGGCAGC
TTGCGGCAACCTCGTCCCTCCTGGCTCANAGGTGGCTTGCTCGATGGCGGCAAGCGACGA
CACTTTCCCAGTGAGCAACAGCAGCGGGGGAAGTTCTCCACTATAATTAATTGGTGTATT
TTTTTTATCTAGTTTTGAAATTCTGTGATGTGAACTTTTAATGAATGTTTGATTCTATGG
TGTGAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7917#0      TCTCTGTCCTGCTCAATCTCTCCCCACATCCCCACATTTGGTGGTAGCGGAGCAAACGGG 60
consensus_7917#1      -CTCTGTCCTGCTCAATCTCTCCCCACATCCCCACATTTGGTGGTAGCGGAGCAAACGGG 59
                       ***********************************************************

consensus_7917#0      AGAAGGCGGCATACACCTCATCTCCCCTCGGCGGCACCTCCTTTCAACAGTGCCTCCCCT 120
consensus_7917#1      AGAAGGCGGCATACACCTCATCTCCCCTCGGCGGCACCTCCTTTCAACAGTGCCTCCCCT 119
                      ************************************************************

consensus_7917#0      AAGTGACAGGGCGAGCGGGAGGAGGCGGCATCCACCTTGCCTCTCCTCGGCGACGCCTCC 180
consensus_7917#1      AAGTGACAGGGCGAGCGGGAGGAG-CGGCATCCACCTTGCCTCTCCTCGGCGACGCCTCC 178
                      ************************ ***********************************

consensus_7917#0      CCACGGCCTTCCCTTCTCCTTGTGCGGTGGCAGTAGCAGCCTCTCCTTTTCCCATGTGTG 240
consensus_7917#1      CCACGGCCTTCCCTTCTCCTTGTGCGGTGGCAGTAGCAGCCTCTCCTTTTCCCATGTGTG 238
                      ************************************************************

consensus_7917#0      GAGAGATCTTTCCCATTTGAAGCCTTGTTCTTCCCCCTCCTTTTCCGGCGACGTGTGGCA 300
consensus_7917#1      GAGAGATCTTTCCCATTTGAAGCCTTGTTCTTCCCCCTCCTTTTCCGGCGACGTGTGGCA 298
                      ************************************************************

consensus_7917#0      GCTTGCGGCAACCTCGTCCCTCCTGGCTCAGAGGTGGCTTGCTCGATGGCGGCAAGCGAC 360
consensus_7917#1      GCTTGCGGCAACCTCGTCCCTCCTGGCTCANAGGTGGCTTGCTCGATGGCGGCAAGCGAC 358
                      ****************************** *****************************

consensus_7917#0      GACACTTTCCCAGTGAGCAACAGCAGCGGGGGAAGTTCTCCACTATAATTAATTGGTGTA 420
consensus_7917#1      GACACTTTCCCAGTGAGCAACAGCAGCGGGGGAAGTTCTCCACTATAATTAATTGGTGTA 418
                      ************************************************************

consensus_7917#0      TTTTTTTTATCTAGTTTTGAAATTCTGTGATGTGAACTTTTAATGAATGTTTGATTCTAT 480
consensus_7917#1      TTTTTTTTATCTAGTTTTGAAATTCTGTGATGTGAACTTTTAATGAATGTTTGATTCTAT 478
                      ************************************************************

consensus_7917#0      GGTGTGAACTTGTCGATGACAAAAAAACAGGGG 513
consensus_7917#1      GGTGTGAA---------AAAAAAAAAA------ 496
                      ********          * *******