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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7921#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1035 fasta sequence
[TGTGATGGAGTGGATTAGATCAGAGATCAAGAAGGAGCGCCCCAAGAATGACTGGATTGCAGGGGCAGCTATTACCAATCCAGCTGCAGACAGGAAGAAGCCAAAGAGGAGGGCACGAGAATGGTGGCGAGAAGAATATGCTGATGAGCTTGCGAAAAAGCAGAAACGACGTGCACTTGCTAAATCAAAGAGCGAGCAGGCAGGGTTGCAATGGTGGGAGCGGGATATTGACGATGACTTGGATGCAAAGGGACGATCCAAATGGAGTATGATGAAGAGCTGGAGTCGGAGAAGCAATGGCAGCACTGGCAATGGCAATGGCAACGGCAATGGCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCGTGATTGGGCAAGTGGGGAATTCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCTATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCTACGGTGTCTTGCTACTGGTACTTATCTCAGGACGCCGGCCGTTGCAAGTGACGGCCTCACCCATGTCTGAGTTTGAGAAGGCAAGCCTCATATCGTGGGCGAAACATCTTGCGCGCGTGAGCCGCTTGATTGATCTTGTTGATCCAGCCCTACAGGATGTGAACCGTGATGAGGTTTTACTCTGCATTACAGTCGCACTCCTTTGCATCCAAAGGTCTCCAGCTCGTCGACCATCAAGTGAGGAGGTACTCCGAATGCTGTCTGGCGAGGGAGAACCTCCGCACCTCCCATTGGAGTTCTCACCGTCTCCACCTGGTGGGTTCCCTTTCAAGTCCCGAAAGAAAGTTCGGTGAGTTTGTTTAGCTCTTACCTAGATGCAAAAGGTAGCTTTAACTTTGTCCCTTAATGTATGTCTCTTTTGGTTCAAGTTCCTATTTTATGTATTCTTTTACTCACTA-CTGTATAAAGTTCCCTAGGGAAAAAGGTAATGCCGACCTGAACTCAAAATTGACAACAACATTGC]
[+] EMBL AK061320 [TGTGATGGAGTGGATTAGATCAGAGATCAAGAAGGAGCGCCCCAAGAATGACTGGATTGCAGGGGCAGCTATTACCAATCCAGCTGCAGACAGGAAGAAGCCAAAGAGGAGGGCACGAGAATGGTGGCGAGAAGAATATGCTGATGAGCTTGCGAAAAAGCAGAAACGACGTGCACTTGCTAAATCAAAGAGCGAGCAGGTAGGGTTGCAATGGTGGGAGCGGGATATTGACGATGACTTGGATGCAAAGGGACGATCCAAATGGAGTATGATGAAGAGCTGGAGTCGGAGAAGCAATGGCAGCACTGGCAATGGCAATGGCAACGGCAATGGCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCGTGATTGGGCAAGTGGGGAATTCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCTATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCTACGGTGTCTTGCTACTGGTACTTATCTCAGGACGCCGGCCGTTGCAAGTGACGGCCTCACCCATGTCTGAGTTTGAGAAGGCAAGCCTCATATCGTGGGCGAAACATCTTGCGCGCGTGAGCCGCTTGATTGATCTTGTTGATCCAGCCCTACAGGATGTGAACCGTGATGAGGTTTTACTCTGCATTACAGTCGCACTCCTTTGCATCCAAAGGTCTCCAGCTCGTCGACCATCAAGTGAGGAGGTACTCCGAATGCTGTCTGGCGAGGGAGAACCTCCGCACCTCCCATTGGAGTTCTCACCGTCTCCACCTGGTGGGTTCCCTTTCAAGTCCCGAAAGAAAGTTCGGTGAGTTTGTTTAGCTCTTACCTAGATGCAAAAGGTAGCTTTAACTTTGTCCCTTAATGTATGTCTCTTTTGGTTCAAGTTCCTATTTTATGTATTCTTTTACTCACTA CTGTATAAAGTTCCCTAGGGAAAAAGGTAATGCCGACCTGAACTCAA ]
[+] EMBL AK065691 [ GTGGCGAGAAGAATATGCTGATGAGCTTGCGAAAAAGCAGAAACGACGTGCACTTGCTAAATCAAAGAGCGAGCAGGCAGGGTTGCAATGGTGGGAGCGGGATATTGACGATGACTTGGATGCAAAGGGACGATCCAAATGGAGTATGATGAAGAGCTGGAGTCGGAGAAGCAATGGCAGCACTGGCAATGGCAATGGCAACGGCAATGGCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCGTGATTGGGCAAGTGGGGAATTCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCTATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCTACGGTGTCTTGCTACTGGTACTTATCTCAGGACGCCGGCCGTTGCAAGTGACGGCCTCACCCATGTCTGAGTTTGAGAAGGCAAGCCTCATATCGTGGGCGAAACATCTTGCGCGCGTGAGCCGCTTGATTGATCTTGTTGATCCAGCCCTACAGGATGTGAACCGTGATGAGGTTTTACTCTGCATTACAGTCGCACTCCTTTGCATCCAAAGGTCTCCAGCTCGTCGACCATCAAGTGAGGAGGTACTCCGAATGCTGTCTGGCGAGGGAGAACCTCCGCACCTCCCATTGGAGTTCTCACCGTCTCCACCTGGTGGGTTCCCTTTCAAGTCCCGAAAGAAAGTTCGGTGAGTTTGTTTAGCTCTTACCTAGATGCAAAAGGTAGCTTTAACTTTGTCCCTTAATGTATGTCTCTTTTGGTTCAAGTTCCTATTTTATGTATTCTTTTACTCACTA CTGTATAAAGTTCCCTAGGGAAAAAGGTAATGCCGACCTGAACTCAAAATTGACAACAACATTGC]
[-] EMBL CB679159 [ GAGCAGGCAGGGTTGCAATGGTGGGAGCGGGATATTGACGATGACTTGGATGCAAAGGGACGATCCAAATGGAGTATGATGAAGAGCTGGAGTCGGAGAAGCAATGGCAGCACTGGCAATGGCAATGGCAACGGCAATGGCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCGTGATTGGGCAAGTGGGGAATTCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCTATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCTACGGTGTCTTGCTACTGGTACTTATCTCAGGACGCCGGCCGTTGCAAGTGACGGCCTCACCCATGTCTGAGTTTGAGAAGGCAAGCCTCATATCGTGGGCGAAACATCTTGCGCGCGTGAGCCGCTTGATTGATCTTGTTGATCCAGCCCTACAGGATGTGAACCGTGATGAGGTTTTACTCTGCATTACAGTCGCACTCCTTTGCATCCAAAGGTCTCCAGCTCGTCGACCATCAAGTGAGGAGGTACTCCGAATGCTGTCTGGCGAGGGAGAACCTCCGCACCTCCCATTGGAGTTCTCACCGTCTCCACCTGGTGGGTTCCCTTTCAAGTCCCGAAAGAAAGTTCGGTGAGTTTGTTTAGCTCTTACCTAGATGCAAAAGGTAGCTTTAACTTTGTCCCTTAATGTATGTCTCTTTTGGTTCAAGTTCCTATTTTATGTATTCTTTTACTCGGTA CTGTATAAAGTTCCCTAGGGAAAAAGGTAAaaaaaagga ]
[-] EMBL CB657091 [ GCACTGGCAATGGCAATGGCAACGGCAATGGCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCGTGATTGGGCAAGTGGGGAATTCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCTATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCTACGGTGTCTTGCTATTGGTACTTATCTCAGAACGCCGGCCGTTGCAAGTGACGGCCTCACCCATGTGTGAGTTTGAGAAGGCAAGCCTCATATCGTGGGCGAAACATCTTGCGCGCGTGAGCCGCTTGATTGATCTTGTCGATCCAGCCCTACAGGATGTGAACCGTGATGAGGTTTTACTCTGCATTACAGTCGCACTCCTTTGCATCCAAAGGTCTCCAGATCGTCGACCATCAAGTGAGGAGGTACTCCGAATGCTGTCTGGCGAGGGAGAACCTCCGCACCTCCCATTGGAGTTCTCACCGTCTCCACCTGGTGGGTTCCCTTTCAAGTCCCGAAAGAAAGTTCGGTGAGTTTGTTTAGCTCTTACCTAGATGCAAAAGGTAGCTTTAACTTTGTCCCTTAATGTATGTCTCTTTTGGTTCAAGTTCCTATTTTATGTATTCTTTTACTCATTATCTGTA ]
consensusID : consensus_7921#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 884 fasta sequence
[GTGGGGGCAGCAATGGTGTAAAAGATTATGTGATGGAGTGGATTAGATCAGAGATCAAGAAGGAGCGCCCCAAGAATGACTGGATTGCAGGGGCAGCTATTACCAACCCAGCTGCAGAAAGGAAGAAGCCAAAGAGGAGGGCACGAGAATGGTGGCGAGAAGAATATGCTGATGAGCTTGCGAAAAAGCAGAAACGACGTGCACTTGCTAAATCAAGGAGCGAGCAGGCAGGGTTGCAATGGTGGGAGCGGGATATTGGCGATGACTTGGATGCAAAGGGACGATCCAAATGGAGTATGATGAAGAGCTGGAGTCGGAGAAGCAATGGCAGCACTGGCAATGGCAGTGGCAACGGCAATGGCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCATGATTGGGCAAGTGGGGAATTCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCTATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCTACGGTGTCCTGCTACTGGTACTTATCTCAGGACGCCGGCCGTTGCAAGTGACGGCCTCACCCATGTCTGAGTTTGAGAAGTCGCACTCCTTTGCATCCAAAGGTCTNCAGCCCGTCGGCCATCAAGTGANGAGGTACTNCGAATGCTGTCTGGCGAGGGAGAACCTNCGCACCTTCCATTGGAGNTCTCACCGTCTNCACCTGGTGGGNTTCCTTTTCAAGTCCCGAAAGAAAGNTCGGTGAGNTTGNTTAGCTCTTACCTANATGCAAAAGGTAGCTTTAACTTTGGCCCTNANGGATGGCTCTTTTGGGTCAAGTCCTATTTTATGGATTCTTTTACTCACT]
[+] EMBL CB096413 [GTGGGGGCAGCAATGGTGTAAAAGATTATGTGATGGAGTGGATTAGATCAGAGATCAAGAAGGAGCGCCCCAAGAATGACTGGATTGCAGGGGCAGCTATTACCAACCCAGCTGCAGAAAGGAAGAAGCCAAAGAGGAGGGCACGAGAATGGTGGCGAGAAGAATATGCTGATGAGCTTGCGAAAAAGCAGAAACGACGTGCACTTGCTAAATCAAGGAGCGAGCAGGCAGGGTTGCAATGGTGGGAGCGGGATATTGGCGATGACTTGGATGCAAAGGGACGATCCAAATGGAGTATGATGAAGAGCTGGAGTCGGAGAAGCAATGGCAGCACTGGCAATGGCAGTGGCAACGGCAATGGCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCATGATTGGGCAAGTGGGGAATTCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCTATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCTACGGTGTCCTGCTACTGGTACTTATCTCAGGACGCCGGCCGTTGCAAGTGACGGCCTCACCCATGTCTGAGTTTGAGAAGTCGCACTCCTTTGCATCCAAAGGTCTNCAGCCCGTCGGCCATCAAGTGANGAGGTACTNCGAATGCTGTCTGGCGAGGGAGAACCTNCGCACCTTCCATTGGAGNTCTCACCGTCTNCACCTGGTGGGNTTCCTTTTCAAGTCCCGAAAGAAAGNTCGGTGAGNTTGNTTAGCTCTTACCTANATGCAAAAGGTAGCTTTAACTTTGGCCCTNANGGATGGCTCTTTTGGGTCAAGTCCTATTTTATGGATTCTTTTACTCACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7921#0 ----------------------------TGTGATGGAGTGGATTAGATCAGAGATCAAGA 32
consensus_7921#1 GTGGGGGCAGCAATGGTGTAAAAGATTATGTGATGGAGTGGATTAGATCAGAGATCAAGA 60
********************************
consensus_7921#0 AGGAGCGCCCCAAGAATGACTGGATTGCAGGGGCAGCTATTACCAATCCAGCTGCAGACA 92
consensus_7921#1 AGGAGCGCCCCAAGAATGACTGGATTGCAGGGGCAGCTATTACCAACCCAGCTGCAGAAA 120
********************************************** *********** *
consensus_7921#0 GGAAGAAGCCAAAGAGGAGGGCACGAGAATGGTGGCGAGAAGAATATGCTGATGAGCTTG 152
consensus_7921#1 GGAAGAAGCCAAAGAGGAGGGCACGAGAATGGTGGCGAGAAGAATATGCTGATGAGCTTG 180
************************************************************
consensus_7921#0 CGAAAAAGCAGAAACGACGTGCACTTGCTAAATCAAAGAGCGAGCAGGCAGGGTTGCAAT 212
consensus_7921#1 CGAAAAAGCAGAAACGACGTGCACTTGCTAAATCAAGGAGCGAGCAGGCAGGGTTGCAAT 240
************************************ ***********************
consensus_7921#0 GGTGGGAGCGGGATATTGACGATGACTTGGATGCAAAGGGACGATCCAAATGGAGTATGA 272
consensus_7921#1 GGTGGGAGCGGGATATTGGCGATGACTTGGATGCAAAGGGACGATCCAAATGGAGTATGA 300
****************** *****************************************
consensus_7921#0 TGAAGAGCTGGAGTCGGAGAAGCAATGGCAGCACTGGCAATGGCAATGGCAACGGCAATG 332
consensus_7921#1 TGAAGAGCTGGAGTCGGAGAAGCAATGGCAGCACTGGCAATGGCAGTGGCAACGGCAATG 360
********************************************* **************
consensus_7921#0 GCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCGTGATTGGGCAAGTGGGGAAT 392
consensus_7921#1 GCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCATGATTGGGCAAGTGGGGAAT 420
*************************************** ********************
consensus_7921#0 TCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCT 452
consensus_7921#1 TCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCT 480
************************************************************
consensus_7921#0 ATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCT 512
consensus_7921#1 ATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCT 540
************************************************************
consensus_7921#0 ACGGTGTCTTGCTACTGGTACTTATCTCAGGACGCCGGCCGTTGCAAGTGACGGCCTCAC 572
consensus_7921#1 ACGGTGTCCTGCTACTGGTACTTATCTCAGGACGCCGGCCGTTGCAAGTGACGGCCTCAC 600
******** ***************************************************
consensus_7921#0 CCATGTCTGAGTTTGAGAAGGCAAGCCTCATATCGTGGGCGAAACATCTTGCGCGCGTGA 632
consensus_7921#1 CCATGTCTGAGTTTGAGAAG---------------------------------------- 620
********************
consensus_7921#0 GCCGCTTGATTGATCTTGTTGATCCAGCCCTACAGGATGTGAACCGTGATGAGGTTTTAC 692
consensus_7921#1 ------------------------------------------------------------
consensus_7921#0 TCTGCATTACAGTCGCACTCCTTTGCATCCAAAGGTCTCCAGCTCGTCGACCATCAAGTG 752
consensus_7921#1 ------------TCGCACTCCTTTGCATCCAAAGGTCTNCAGCCCGTCGGCCATCAAGTG 668
************************** **** ***** **********
consensus_7921#0 AGGAGGTACTCCGAATGCTGTCTGGCGAGGGAGAACCTCCGCACCTCCCATTGGAGTTCT 812
consensus_7921#1 ANGAGGTACTNCGAATGCTGTCTGGCGAGGGAGAACCTNCGCACCTTCCATTGGAGNTCT 728
* ******** *************************** ******* ********* ***
consensus_7921#0 CACCGTCTCCACCTGGTGGGTTCCCTTT-CAAGTCCCGAAAGAAAGTTCGGTGAGTTTGT 871
consensus_7921#1 CACCGTCTNCACCTGGTGGGNTTCCTTTTCAAGTCCCGAAAGAAAGNTCGGTGAGNTTGN 788
******** *********** * ***** ***************** ******** ***
consensus_7921#0 TTAGCTCTTACCTAGATGCAAAAGGTAGCTTTAACTTTGTCCCTTAATGTATGTCTCTTT 931
consensus_7921#1 TTAGCTCTTACCTANATGCAAAAGGTAGCTTTAACTTTGGCCCTNAN-GGATGGCTCTTT 847
************** ************************ **** * * *** ******
consensus_7921#0 TGGTTCAAGTTCCTATTTTATGTATTCTTTTACTCACTACTGTATAAAGTTCCCTAGGGA 991
consensus_7921#1 TGGGTCAAGT-CCTATTTTATGGATTCTTTTACTCACT---------------------- 884
*** ****** *********** ***************
consensus_7921#0 AAAAGGTAATGCCGACCTGAACTCAAAATTGACAACAACATTGC 1035
consensus_7921#1 --------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||