cluster # 7923

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7923 cluster # 7923 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7923#0 length = 724 sequences # 4

consensus_7923#1 length = 447 sequences # 1

consensusID : consensus_7923#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 724
fasta sequence

                              [TGAGGAGAGGAGAGGCGAGACGAGGGGGGAATCGAGGCGCGAGGGAGAGGGAGAGGGAGAGGGAGATGTCGATCCTGTGGGAGAAGAGCGCGGGGTGGCGGTGGCTGGTGCGGCGGACGCGCGACTCCAAGCCCTTCTTCTTCACCTTCGCGGCGCTGTGCGGCGTTGTCCCGGGCGTCGTCGGCTACGGCGTGATGCAGCTCACCAGCTCCCGCAACGACCAGCTCGAGGCCCACCTCCGCTCCACCGCCCGCCCCGAGACCGCGATGATGGGGCAAGTGAACCGGGAGAGACTGGCAGAGTTTCTTGGAGAGCTGCAAAGGAAAGAGGACACAAA-TGACAGATATGTTGCTTGCCCTCAAAGGGGAGACACTGACGAGGAAGCGGTATGAACGGATTCAGCCTGTCCAACAGGAAGGTACACCGGAGAGTCCGCCTGTCCAGGAGCCAGCTACAACGGAGAGTGTCAAGGCTAAATGATTCATGGTTATTGCTCCGAGAAAGATATGATCCCCTCAAAACCCCTGACCTACATGTGCTGTACCCTTGGAAGGTTAAAATCCACGTTCGTAAGCATCCTTATGCCTCTCGTTTTGGTTTACCTACCAGATTGGTTTCCCCGTTCCCTGATAGTTTAGTTTGCCGTCGATGTCCGGTAATTTTGGGTCTGTGTGCCCATGATCCNNTGTTCCCCTGTGGACCCTTTAAGGTTTTTTTGACCTCC]

[+] EMBL OSC8541              [TGAGGAGAGGAGAGGCGAGACGAGGGGGGAATCGAGGCGCGAGGGAGAGGGAGAGGGAGAGGGAGATGTCGATCCTGTGGGAGAAGAGCGCGGGGTGGCGGTGGCTGGTGCGGCGGACGCGCGACTCCAAGCCNTTCTTCTTNACCTTCGCGGCGCTGTGCGGCGTTGTCCCGGGCGTCGTCGGCTACGGCGTGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL OSR05261A            [       AGGAGAGGCGAGACGAGGGGGGAATCGAGGCGCGAGGGAGAGGGAGAGGGAGAGGGAGATGTCGATCCTGTGGGAGAAGAGCGCGGGGTGGCGGTGGCTGGTGCGGCGGACGCGCGACTCCAAGCCCTTCTTCTTCACCTTCGCGGCGCTGTGCGGCGTTGTCCCGGGCGTCGTCGGCTACGGCGTGATGCAGCTCACCAGCTCCCGCAACGACCAGCTCGAGGCCCANCTCCGATCCACCGNCCGCCCCGAGACCNNGATGATGGGGCAAGTNAACCGGGAGAGACTGGCAGAGTTTCTTNGAGANCTGCAAAGGAAAGAGGNCACAAATTGNCAGATATGTTGCTNGCCCTCAAAG                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU096496             [                                         AGGGAGAGGGAGAGGGAGAGGGAGATGTCGATCCTGTGGGAGAAGAGCGCGGGGTGGCGGTGGCTGGTGCGGCGGACGCGCGACTCCAAGCCCTTCTTCTTCACCTTCGCGGCGCTGTGCGGCGTTGTCCCGGGCGTCGTCGGCTACGGCGTGATGCAGCTCACCAGCTCCCGCAACGACCAGCTCGAGGCCCACCTNCGCTCCACCGCCCGCCCCGAGACCGCGATGATGGGGCAAGTGAACCGGGAGAGACTGGCAGAGTTTCTTGGAGAGCTGCAAAGGAAAGAGGACACAAA TGACAGATATGTTGCTTGCCCTCAAAGGGGA                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CA753578             [                                                                                        CGCGGGGTGGCGGTGGCTGGTGCGGCGGACGCGCGACTCCAAGCCCTTCTTCTTCACCTTCGCGGCGCTGTGCGGCGTTGTCCCGGGCGTCGTCGGCTACGGCGTGATGCAGCTCACCAGCTCCCGCAACGACCAGCTCGAGGCCCACCTCCGCTCCACCGCCCGCCCCGAGACCGCGATGATGGGGCAAGTGAACCGGGAGAGACTGGCAGAGTTTCTTGGAGAGCTGCAAAGGAAAGAGGACACAAA TGACCGATATGTTGC TGCCCTCAAAGGGGAGACACTGACGAGGAAGCGGTATGAACGGATTCAGCCTGTCCAACAGGAAGGTACACCGGAGAGTCCGCCTGTCCAGGAGCCAGCTACAACGGAGAGTGTCAAGGCTAAATGATTCATGGTTATTGCTCCGAGAAAGATATGATCCCCTCAAAACCCCTGACCTACATGTGCTGTACCCTTGGAAGGTTAAAATCCACGTTCGTAAGCATCCTTATGCCTCTCGTTTTGGTTTACCTACCAGATTGGTTTCCCCGTTCCCTGATAGTTTAGTTTGCCGTCGATGTCCGGTAATTTTGGGTCTGTGTGCCCATGATCCNNTGTTCCCCTGTGGACCCTTTAAGGTTTTTTTGACCTCC]




>consensus_7923#0
TGAGGAGAGGAGAGGCGAGACGAGGGGGGAATCGAGGCGCGAGGGAGAGGGAGAGGGAGA
GGGAGATGTCGATCCTGTGGGAGAAGAGCGCGGGGTGGCGGTGGCTGGTGCGGCGGACGC
GCGACTCCAAGCCCTTCTTCTTCACCTTCGCGGCGCTGTGCGGCGTTGTCCCGGGCGTCG
TCGGCTACGGCGTGATGCAGCTCACCAGCTCCCGCAACGACCAGCTCGAGGCCCACCTCC
GCTCCACCGCCCGCCCCGAGACCGCGATGATGGGGCAAGTGAACCGGGAGAGACTGGCAG
AGTTTCTTGGAGAGCTGCAAAGGAAAGAGGACACAAATGACAGATATGTTGCTTGCCCTC
AAAGGGGAGACACTGACGAGGAAGCGGTATGAACGGATTCAGCCTGTCCAACAGGAAGGT
ACACCGGAGAGTCCGCCTGTCCAGGAGCCAGCTACAACGGAGAGTGTCAAGGCTAAATGA
TTCATGGTTATTGCTCCGAGAAAGATATGATCCCCTCAAAACCCCTGACCTACATGTGCT
GTACCCTTGGAAGGTTAAAATCCACGTTCGTAAGCATCCTTATGCCTCTCGTTTTGGTTT
ACCTACCAGATTGGTTTCCCCGTTCCCTGATAGTTTAGTTTGCCGTCGATGTCCGGTAAT
TTTGGGTCTGTGTGCCCATGATCCNNTGTTCCCCTGTGGACCCTTTAAGGTTTTTTTGAC
CTCC

consensusID : consensus_7923#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 447
fasta sequence

                              [CAGAGTTTCTTGGAGAGCTGCAAAGGAAAGAGGACACAAATGACAGATATGTTGCTGCCCTCAAAGGGGAGACACTGACGAGGAAGCGGTATGAACGGATTCAGCCTGTCAACAAGGAAGGTACACCGGAGAGTCCGCCTGTCAAGGAGCAAGCTACAACGGAGAGTGTCAAGGCTAAATGATTCATGGTTATTGCTCCGAGAAAGATATTATCCACTCAAAACACTGAACATAAATGTGCTGTACCTTTGGAAGGTTGAATTCAAAGTTCGTAAGCATCATTATGCATCTAGTTTTTGTTTAACTACAAGATGGGTTCACAGTACACTGATATTTTAGTTGCAGTTGATGTCCTGTAAATTTTGGTCTGTGTGCCCATGATCAATTTTTAGCATGTTGGACTCTTTTTAGTATATTTTGACATCACATCATAAAAAAAAAAAAAAA]

[+] EMBL AU095424             [CAGAGTTTCTTGGAGAGCTGCAAAGGAAAGAGGACACAAATGACAGATATGTTGCTGCCCTCAAAGGGGAGACACTGACGAGGAAGCGGTATGAACGGATTCAGCCTGTCAACAAGGAAGGTACACCGGAGAGTCCGCCTGTCAAGGAGCAAGCTACAACGGAGAGTGTCAAGGCTAAATGATTCATGGTTATTGCTCCGAGAAAGATATTATCCACTCAAAACACTGAACATAAATGTGCTGTACCTTTGGAAGGTTGAATTCAAAGTTCGTAAGCATCATTATGCATCTAGTTTTTGTTTAACTACAAGATGGGTTCACAGTACACTGATATTTTAGTTGCAGTTGATGTCCTGTAAATTTTGGTCTGTGTGCCCATGATCAATTTTTAGCATGTTGGACTCTTTTTAGTATATTTTGACATCACATCATAAAAAAAAAAAAAAA]




>consensus_7923#1
CAGAGTTTCTTGGAGAGCTGCAAAGGAAAGAGGACACAAATGACAGATATGTTGCTGCCC
TCAAAGGGGAGACACTGACGAGGAAGCGGTATGAACGGATTCAGCCTGTCAACAAGGAAG
GTACACCGGAGAGTCCGCCTGTCAAGGAGCAAGCTACAACGGAGAGTGTCAAGGCTAAAT
GATTCATGGTTATTGCTCCGAGAAAGATATTATCCACTCAAAACACTGAACATAAATGTG
CTGTACCTTTGGAAGGTTGAATTCAAAGTTCGTAAGCATCATTATGCATCTAGTTTTTGT
TTAACTACAAGATGGGTTCACAGTACACTGATATTTTAGTTGCAGTTGATGTCCTGTAAA
TTTTGGTCTGTGTGCCCATGATCAATTTTTAGCATGTTGGACTCTTTTTAGTATATTTTG
ACATCACATCATAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7923#0      TGAGGAGAGGAGAGGCGAGACGAGGGGGGAATCGAGGCGCGAGGGAGAGGGAGAGGGAGA 60
consensus_7923#1      ------------------------------------------------------------
                                                                                  

consensus_7923#0      GGGAGATGTCGATCCTGTGGGAGAAGAGCGCGGGGTGGCGGTGGCTGGTGCGGCGGACGC 120
consensus_7923#1      ------------------------------------------------------------
                                                                                  

consensus_7923#0      GCGACTCCAAGCCCTTCTTCTTCACCTTCGCGGCGCTGTGCGGCGTTGTCCCGGGCGTCG 180
consensus_7923#1      ------------------------------------------------------------
                                                                                  

consensus_7923#0      TCGGCTACGGCGTGATGCAGCTCACCAGCTCCCGCAACGACCAGCTCGAGGCCCACCTCC 240
consensus_7923#1      ------------------------------------------------------------
                                                                                  

consensus_7923#0      GCTCCACCGCCCGCCCCGAGACCGCGATGATGGGGCAAGTGAACCGGGAGAGACTGGCAG 300
consensus_7923#1      ---------------------------------------------------------CAG 3
                                                                               ***

consensus_7923#0      AGTTTCTTGGAGAGCTGCAAAGGAAAGAGGACACAAATGACAGATATGTTGCTTGCCCTC 360
consensus_7923#1      AGTTTCTTGGAGAGCTGCAAAGGAAAGAGGACACAAATGACAGATATGTTGCT-GCCCTC 62
                      ***************************************************** ******

consensus_7923#0      AAAGGGGAGACACTGACGAGGAAGCGGTATGAACGGATTCAGCCTGTCCAACAGGAAGGT 420
consensus_7923#1      AAAGGGGAGACACTGACGAGGAAGCGGTATGAACGGATTCAGCCTGTCAACAAGGAAGGT 122
                      ************************************************ *  ********

consensus_7923#0      ACACCGGAGAGTCCGCCTGTCCAGGAGCCAGCTACAACGGAGAGTGTCAAGGCTAAATGA 480
consensus_7923#1      ACACCGGAGAGTCCGCCTGTCAAGGAGCAAGCTACAACGGAGAGTGTCAAGGCTAAATGA 182
                      ********************* ****** *******************************

consensus_7923#0      TTCATGGTTATTGCTCCGAGAAAGATATGATCCCCTCAAAACCCCTGACCTACATGTGCT 540
consensus_7923#1      TTCATGGTTATTGCTCCGAGAAAGATATTATCCACTCAAAACACTGAACATAAATGTGCT 242
                      **************************** **** ******** *   ** ** *******

consensus_7923#0      GTACCCTTGGAAGGTTAAAATCCACGTTCGTAAGCATCCTTATGCCTCTCGTTTTGGTTT 600
consensus_7923#1      GTACCTTTGGAAGGTTGAATTCAAAGTTCGTAAGCATCATTATGCATCTAGTTTTTGTTT 302
                      ***** ********** ** ** * ************* ****** *** ***** ****

consensus_7923#0      ACCTACCAGATTGGTTTCCCCGTTCCCTGATAGTTTAGTTTGCCGTCGATGTCCGGTAAT 660
consensus_7923#1      AACTACAAGATGGGTT-CACAGTACACTGATATTTTAGTT-GCAGTTGATGTCCTGTAAA 360
                      * **** **** **** * * ** * ****** ******* ** ** ******* **** 

consensus_7923#0      TTTGGGTCTGTGTGCCCATGATCCNNTGTTCCCCTGT-GGACCCTTTAAGGTTT-TTTTG 718
consensus_7923#1      TTTTGGTCTGTGTGCCCATGATCAATTTTTAGCATGTTGGACTCTTTTTAGTATATTTTG 420
                      *** *******************   * **  * *** **** ****   ** * *****

consensus_7923#0      ACCTCC--------------------- 724
consensus_7923#1      ACATCACATCATAAAAAAAAAAAAAAA 447
                      ** **