cluster # 7924

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Oryza sativa
cluster # 7924 cluster # 7924 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7924#0 length = 1165 sequences # 4

consensus_7924#1 length = 330 sequences # 1

consensusID : consensus_7924#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1165
fasta sequence

                              [TAAATGTCCATTTTCTCGTGGGCCACCGGGCTGTGCGAACTCGCTACGTGGAATACTTGGGCCCTTCCCTTCCTTTCCCCAATCCGCCTCATCCGATAATACCCCCCACCCCTCTCTCGTTTCGGCGGCGGCGGCGCGCGGCCGGAGCCCGAGCTGAGACCACCACCACGGCACCACCACGAACACGACGATGATGGCCGCGGCAGCGAGAATGGCGTTCGCCTCATGCGGCCGCCTCCTCGCCCCCTCCTCGTCGTCATCCCTCCCCGCCCTGCCAAGAACCCGGGGCAGCGTCGCCGCAGCGGCAAGCATCCCGTCTCGTTCTTGGCGGCGGCGAGATCCGCCTCCGTCCTCTGCTACTGCTCCGACGCCACCGTCGCGCCGGCCCCGCAGGCGGCGGCCGCGGAGGGGGAAGGGGAGGAGGGGGAGAAGAAGGCGGAGGTTCCCCCCGTGGAGGAG-GTGGCGGCGCTGCTGGACATCCGGG-TGGGG-CGGGTGGTGAAGGCGTGGCGGCACCCGGAGGCGGACACGCTGTACGTGGAGGAGGTCGACGTCGGCGAGGAGCAGCCGCGCACCATCTGCAGCGGCCTCGTCAACTACCTCCCCATCGACCAGCTCCAGGACAGCAATGTGATTGTTCTTGCGAACCTCAAACCGAGGAACATGCGGGGGATAAAGTCAAACGGCATGCTTATGGCTGCATCTGATGCTTCTCATGAAAATGTCGAATTGCTTACCCCTCCTGAAGGATCTGTTCCAGGTGAAAGGGTATGGTTTGGTACTGAAGATGGAAAGGATCGCCAATCAGAAGCTGCTTCACCAAATCAGGTTCAAAAAAAGAAGATTTGGGAATCAGTTCAGCCTCATCTTAGGACATCAGAAAACTGCACAGCATTTCTTGGCGAGCACCCGATGCGTACCTCAGCGGGTGTGGTTTTCTGCAAAACTTTGCAGGGTGCAAGAGTGTCATAAGTCTCTTTCAAGAAGCTTTTTTTTTTTTCTTCTTTGGTATCCATATTGTGTACCTTACTGAAAATAATCATATGGTATGAGTAAA-AATCTTAGAGCAAGATGGTTTCTGAGGCTTTATGGAGGTCGTTCACAATTTTGTAGCTTTCTGATGTCAAAGCTGGAACATTTTACTTCAATTGGAGATTGATTTATAATT]

[+] EMBL AK108051             [TAAATGTCCATTTTCTCGTGGGCCACCGGGCTGTGCGAACTCGCTACGTGGAATACTTGGGCCCTTCCCTTCCTTTCCCCAATCCGCCTCATCCGATAATACCCCCCACCCCTCTCTCGTTTCGGCGGCGGCGGCGCGCGGCCGGAGCCCGAGCTGAGACCACCACCACGGCACCACCACGAACACGACGATGATGGCCGCGGCAGCGAGAATGGCGTTCGCCTCATGCGGCCGCCTCCTCGCCCCCTCCTCGTCGTCATCCCTCCCCGCCCTGCCAAGAACCCGGGGCAGCGTCGCCGCAGCGGCAAGCATCCCGTCTCGTTCTTGGCGGCGGCGAGATCCGCCTCCGTCCTCTGCTACTGCTCCGACGCCACCGTCGCGCCGGCCCCGCAGGCGGCGGCCGCGGAGGGGGAAGGGGAGGAGGGGGAGAAGAAGGCGGAGGTTCCCCCCGTGGAGGAG GTGGCGGCGCTGCTGGACATCCGGG TGGGG CGGGTGGTGAAGGCGTGGCGGCACCCGGAGGCGGACACGCTGTACGTGGAGGAGGTCGACGTCGGCGAGGAGCAGCCGCGCACCATCTGCAGCGGCCTCGTCAACTACCTCCCCATCGACCAGCTCCAGGACAGCAATGTGATTGTTCTTGCGAACCTCAAACCGAGGAACATGCGGGGGATAAAGTCAAACGGCATGCTTATGGCTGCATCTGATGCTTCTCATGAAAATGTCGAATTGCTTACCCCTCCTGAAGGATCTGTTCCAGGTGAAAGGGTATGGTTTGGTACTGAAGATGGAAAGGATCGCCAATCAGAAGCTGCTTCACCAAATCAGGTTCAAAAAAAGAAGATTTGGGAATCAGTTCAGCCTCATCTTAGGACATCAGAAAACTGCACAGCATTTCTTGGCGAGCACCCGATGCGTACCTCAGCGGGTGTGGTTTTCTGCAAAACTTTGCAGGGTGCAAGAGTGTCATAAGTCTCTTTCAAGAAGCTTTTTTTTTTTTCTTCTTTGGTATCCATATTGTGTACCTTACTGAAAATAATCATATGGTATGAGTAAA AATCTTAGAGCAAGATGGTTTCTGAGGCTTTATGGAGGTCGTTCACAATTTTGTAGCTTTCTGATGTCAAAGCTGGAACATTTTACTTCAATTGGAGATTGATTTATAATT]
[+] EMBL CB964866             [                                                                                                                                                                                                                                                                                                                                                                                                                    GGAGGGGGAAGGGGAGGAGGGGGAGAAGAAGG GGAGGTTCCCCCCGTGGAGGAGTGTGGCGGCGCTGCTGGACATCCGGG TGGGG CGGGTGGTGAAGGCGTGGCGGCACCCGGAGGCGGACACGCTGTACGTGGAGGAGGTCGACGTCGGCGAGGAGCGGCCGCGCACCATCTGCAGCGGCCTCGTCAACTACCTCCCCATCGACCAGCTCCAGGACAGCAATGTGATTGTTCTTGCGAACCTCAAACCGAGGAACATGCGGGGGATAAAGTCAAACGGCATGCTTATGGCTGCATCTGATGCTTCTCATGAAAATGTCGAATTGCTTACCCCTCCTGAAGGATCTGTTCCAGGTGAAAGGGTATGGTTTGGTACTGAAGATGGAAAGGATCGCCAATCAGAAGCTGCTTCACCAAATCAGGTTCAAAAAAAGAAGATTTGGGAATCAGTTCAGCCTCATCTTAGGACATCAGAAAACTGCACAGCATTTCTTGGCGAGCACCCGATGCGTACCTCAGCGGGTGTGGTTTTCTGCAAAACTTTGCAGGGTGCAAGAGTGTCATAAGTCTCTTTCAAGAAGCTTAATATTAAT  ATCTTTGGTATCCATATTGTGTACCTTACTGAAAATAATCATATGGTATGAGTAAAGAATCTT                                                                                                         ]
[-] EMBL AU163314             [                                                                                                                                                                                                                                                                                                                                                                                                                              ngnGAGGAGGGGGAGAAGAAGGCGGAGGTTCCCCCCGTGGAGGAG GTGGCGGCGCTGCTGGACANCCGGG TGGGG CGGGTGGTGAAGGCGTGGCGGCACCCGGAGGCGGACACGCTGTACGTGGAGGAGGTCGACGTCGGCGAGGAGCAGCCGCGCACCATCTGCAGCGGCCTCGTCAACTACCTCCCCATCGACCAGCTCCAGGACAGCAATGTGATTGTTCTTGCGAACCTCAAACCGAGGAACATGCGGGGGATAAAGTCAAACGGCATGCTTATGGCTGCATCTGATGCTTCTCATGAAAATGTCGAATTGCTTACCCCTCCTGAAGGATCTGTTCCAGGTGAAAGGGTATGGTTTGGTACTGAAGATGGAAAGGATCGCCAATCAGAAGCTGCTTCACCAAACCAtacccc                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL AU163313             [                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTTCCCCCCGTGGAAGAA GTTGCCGCCCTGCTGAACATCCGGGTTGGGGCCGGTTGTTAAAGCCTTGGCGGCACCCGGAGGCGGACACGCTGTACGTGGAGGAGGTCGACGTCGGCGAGGAGCAGCCGCGCACCATCTGCAGCGGCCTCGTCAACTACCTCCCCATCGACCAGCTCCAGGACAGCAATGTGATTGTTCTTGCGAACCTCAAACCGAGGAACATGCGGGGGATAAAGTCAAACGGCATGCTTATGGCTGCATCTGATGCTTCTCATGAAAATGTCGAATTGCTTACCCCTCCTGAAGGATCTGTTCCAGGTGAAAGGGTATGGTTTGGTACTGAAGATGGAAAGGATCGCCAATCAGAAGCTGCTTC                                                                                                                                                                                                                                                                                                                                                               ]




>consensus_7924#0
TAAATGTCCATTTTCTCGTGGGCCACCGGGCTGTGCGAACTCGCTACGTGGAATACTTGG
GCCCTTCCCTTCCTTTCCCCAATCCGCCTCATCCGATAATACCCCCCACCCCTCTCTCGT
TTCGGCGGCGGCGGCGCGCGGCCGGAGCCCGAGCTGAGACCACCACCACGGCACCACCAC
GAACACGACGATGATGGCCGCGGCAGCGAGAATGGCGTTCGCCTCATGCGGCCGCCTCCT
CGCCCCCTCCTCGTCGTCATCCCTCCCCGCCCTGCCAAGAACCCGGGGCAGCGTCGCCGC
AGCGGCAAGCATCCCGTCTCGTTCTTGGCGGCGGCGAGATCCGCCTCCGTCCTCTGCTAC
TGCTCCGACGCCACCGTCGCGCCGGCCCCGCAGGCGGCGGCCGCGGAGGGGGAAGGGGAG
GAGGGGGAGAAGAAGGCGGAGGTTCCCCCCGTGGAGGAGGTGGCGGCGCTGCTGGACATC
CGGGTGGGGCGGGTGGTGAAGGCGTGGCGGCACCCGGAGGCGGACACGCTGTACGTGGAG
GAGGTCGACGTCGGCGAGGAGCAGCCGCGCACCATCTGCAGCGGCCTCGTCAACTACCTC
CCCATCGACCAGCTCCAGGACAGCAATGTGATTGTTCTTGCGAACCTCAAACCGAGGAAC
ATGCGGGGGATAAAGTCAAACGGCATGCTTATGGCTGCATCTGATGCTTCTCATGAAAAT
GTCGAATTGCTTACCCCTCCTGAAGGATCTGTTCCAGGTGAAAGGGTATGGTTTGGTACT
GAAGATGGAAAGGATCGCCAATCAGAAGCTGCTTCACCAAATCAGGTTCAAAAAAAGAAG
ATTTGGGAATCAGTTCAGCCTCATCTTAGGACATCAGAAAACTGCACAGCATTTCTTGGC
GAGCACCCGATGCGTACCTCAGCGGGTGTGGTTTTCTGCAAAACTTTGCAGGGTGCAAGA
GTGTCATAAGTCTCTTTCAAGAAGCTTTTTTTTTTTTCTTCTTTGGTATCCATATTGTGT
ACCTTACTGAAAATAATCATATGGTATGAGTAAAAATCTTAGAGCAAGATGGTTTCTGAG
GCTTTATGGAGGTCGTTCACAATTTTGTAGCTTTCTGATGTCAAAGCTGGAACATTTTAC
TTCAATTGGAGATTGATTTATAATT

consensusID : consensus_7924#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence

                              [NTGGCGGCAACCCGGAAGCGGGACACGCTGTACGTGGAGGAGGTCGACGTCGGCGAGGAGCAGCCGCGCACCATCTGCAGCGGCCTCGTCAACTACCTCCCCATCGACCAGCTCCAGGACAGCAATGTGATTGTTCTTGCGAACCTCAAACCGAGGAACATGCGGGGGATAAANTCAAACGGCATGCTTATGGCTGCATNTGATGCTTCTCATGAAAATGTCGAATTGCTTACCCCTCCTGAAGGATCTGTTCCAGGTGAAAGGGTATGGTTTGGTACTGAAGATGGAAAGGATCGCCAATNAGAAGCTGCTTCACCAAANCCATTCATN]

[-] EMBL C28689               [NTGGCGGCAACCCGGAAGCGGGACACGCTGTACGTGGAGGAGGTCGACGTCGGCGAGGAGCAGCCGCGCACCATCTGCAGCGGCCTCGTCAACTACCTCCCCATCGACCAGCTCCAGGACAGCAATGTGATTGTTCTTGCGAACCTCAAACCGAGGAACATGCGGGGGATAAANTCAAACGGCATGCTTATGGCTGCATNTGATGCTTCTCATGAAAATGTCGAATTGCTTACCCCTCCTGAAGGATCTGTTCCAGGTGAAAGGGTATGGTTTGGTACTGAAGATGGAAAGGATCGCCAATNAGAAGCTGCTTCACCAAANCCATTCATN]




>consensus_7924#1
NTGGCGGCAACCCGGAAGCGGGACACGCTGTACGTGGAGGAGGTCGACGTCGGCGAGGAG
CAGCCGCGCACCATCTGCAGCGGCCTCGTCAACTACCTCCCCATCGACCAGCTCCAGGAC
AGCAATGTGATTGTTCTTGCGAACCTCAAACCGAGGAACATGCGGGGGATAAANTCAAAC
GGCATGCTTATGGCTGCATNTGATGCTTCTCATGAAAATGTCGAATTGCTTACCCCTCCT
GAAGGATCTGTTCCAGGTGAAAGGGTATGGTTTGGTACTGAAGATGGAAAGGATCGCCAA
TNAGAAGCTGCTTCACCAAANCCATTCATN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7924#0      TAAATGTCCATTTTCTCGTGGGCCACCGGGCTGTGCGAACTCGCTACGTGGAATACTTGG 60
consensus_7924#1      ------------------------------------------------------------
                                                                                  

consensus_7924#0      GCCCTTCCCTTCCTTTCCCCAATCCGCCTCATCCGATAATACCCCCCACCCCTCTCTCGT 120
consensus_7924#1      ------------------------------------------------------------
                                                                                  

consensus_7924#0      TTCGGCGGCGGCGGCGCGCGGCCGGAGCCCGAGCTGAGACCACCACCACGGCACCACCAC 180
consensus_7924#1      ------------------------------------------------------------
                                                                                  

consensus_7924#0      GAACACGACGATGATGGCCGCGGCAGCGAGAATGGCGTTCGCCTCATGCGGCCGCCTCCT 240
consensus_7924#1      ------------------------------------------------------------
                                                                                  

consensus_7924#0      CGCCCCCTCCTCGTCGTCATCCCTCCCCGCCCTGCCAAGAACCCGGGGCAGCGTCGCCGC 300
consensus_7924#1      ------------------------------------------------------------
                                                                                  

consensus_7924#0      AGCGGCAAGCATCCCGTCTCGTTCTTGGCGGCGGCGAGATCCGCCTCCGTCCTCTGCTAC 360
consensus_7924#1      ------------------------------------------------------------
                                                                                  

consensus_7924#0      TGCTCCGACGCCACCGTCGCGCCGGCCCCGCAGGCGGCGGCCGCGGAGGGGGAAGGGGAG 420
consensus_7924#1      ------------------------------------------------------------
                                                                                  

consensus_7924#0      GAGGGGGAGAAGAAGGCGGAGGTTCCCCCCGTGGAGGAGGTGGCGGCGCTGCTGGACATC 480
consensus_7924#1      ------------------------------------------------------------
                                                                                  

consensus_7924#0      CGGGTGGGGCGGGTGGTGAAGGCGTGGCGGCA-CCCGGAGGCGG-ACACGCTGTACGTGG 538
consensus_7924#1      -----------------------NTGGCGGCAACCCGGAAGCGGGACACGCTGTACGTGG 37
                                              ******** ****** **** ***************

consensus_7924#0      AGGAGGTCGACGTCGGCGAGGAGCAGCCGCGCACCATCTGCAGCGGCCTCGTCAACTACC 598
consensus_7924#1      AGGAGGTCGACGTCGGCGAGGAGCAGCCGCGCACCATCTGCAGCGGCCTCGTCAACTACC 97
                      ************************************************************

consensus_7924#0      TCCCCATCGACCAGCTCCAGGACAGCAATGTGATTGTTCTTGCGAACCTCAAACCGAGGA 658
consensus_7924#1      TCCCCATCGACCAGCTCCAGGACAGCAATGTGATTGTTCTTGCGAACCTCAAACCGAGGA 157
                      ************************************************************

consensus_7924#0      ACATGCGGGGGATAAAGTCAAACGGCATGCTTATGGCTGCATCTGATGCTTCTCATGAAA 718
consensus_7924#1      ACATGCGGGGGATAAANTCAAACGGCATGCTTATGGCTGCATNTGATGCTTCTCATGAAA 217
                      **************** ************************* *****************

consensus_7924#0      ATGTCGAATTGCTTACCCCTCCTGAAGGATCTGTTCCAGGTGAAAGGGTATGGTTTGGTA 778
consensus_7924#1      ATGTCGAATTGCTTACCCCTCCTGAAGGATCTGTTCCAGGTGAAAGGGTATGGTTTGGTA 277
                      ************************************************************

consensus_7924#0      CTGAAGATGGAAAGGATCGCCAATCAGAAGCTGCTTCACCAAATCAGGTTCAAAAAAAGA 838
consensus_7924#1      CTGAAGATGGAAAGGATCGCCAATNAGAAGCTGCTTCACCAAANCCA-TTCATN------ 330
                      ************************ ****************** *   ****        

consensus_7924#0      AGATTTGGGAATCAGTTCAGCCTCATCTTAGGACATCAGAAAACTGCACAGCATTTCTTG 898
consensus_7924#1      ------------------------------------------------------------
                                                                                  

consensus_7924#0      GCGAGCACCCGATGCGTACCTCAGCGGGTGTGGTTTTCTGCAAAACTTTGCAGGGTGCAA 958
consensus_7924#1      ------------------------------------------------------------
                                                                                  

consensus_7924#0      GAGTGTCATAAGTCTCTTTCAAGAAGCTTTTTTTTTTTTCTTCTTTGGTATCCATATTGT 1018
consensus_7924#1      ------------------------------------------------------------
                                                                                  

consensus_7924#0      GTACCTTACTGAAAATAATCATATGGTATGAGTAAAAATCTTAGAGCAAGATGGTTTCTG 1078
consensus_7924#1      ------------------------------------------------------------
                                                                                  

consensus_7924#0      AGGCTTTATGGAGGTCGTTCACAATTTTGTAGCTTTCTGATGTCAAAGCTGGAACATTTT 1138
consensus_7924#1      ------------------------------------------------------------
                                                                                  

consensus_7924#0      ACTTCAATTGGAGATTGATTTATAATT 1165
consensus_7924#1      ---------------------------