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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7931#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1172 fasta sequence
[CCCTGTAGCATGAACCAGCTGGCGCTCACTCCCACCCCCAAGCGGCAGAAGGTGGAGGAGAGCGCGGATGGGAACGGGTGCAAGCATTGCGCCTGCAAGAAGTCGAGATGCTTGAAGCTCTATTGCCCATGCTTTGCTGGTGGAGGTTATTGTTCTGAAAAGTGTGGATGCCAACCATGCTTCAACAAGGCCTTATATGCAGAAACAGTTCAGACCACTCGCAAGGTGCTTCTTTCACGGCAGAAACGGATGTCACTGAAAATTAATCGAAGATCTGAGGCAAATGCGGAAGCTGTGGAAGATGCTCATCATTCTTCTTCTTCAACTCCGCCTAGGCGAGGTTGCAATTGCAAGAAATCAAGTTGCCTAAAGAAATACTGTGATTGCTACCAGGATGGGACTGGTTGCTCTTTGTTTTGCCGATGTGAGGACTGCAGGAATCCTTTCGGGAAAAATGAAGGCATAATGGCAGAAGAAAGTAAGCGCTTTTTATACACTGGCGCAGACCTGGACCACAGTGAGGATGAACAAGACTTTATCGTGGAACGTTCACCTCGCCTGCAGTCACCAATCTCAAAAGAGTCCTCCTTCCAGCAAACTCCCCCGCATATCAGAGCCACGAACAGAGATACACACATGTTCCCGCAGGCGATATCGCAGTGGCAGCCCCGCTCATGGCATTGCTCCAAGAGGCAGAGCAACGACCGGGTGATCGACGACTCAGGGGAGTACAAGAACTCGAATCACGACTGGCAGTTGGCCAAGCCAGAGGACAGCTACAGCATATCGAGATGCGTCCAGATCCTCAACGGCATGGCCGAGCTATCTCAGGTGGAGAAATCGGTTGCCCCCGATGTGTTCCTCCAGGCGGGGAACCGGGAAATATTCATCTCGCTTAACGGTGACGTCCGGGCCCTGTGGCTGAAACGCAAGATCCAGAACCTGACTTAGGGCATGCCATTTGTCACCTTAGTGTTGTTTTGGAGGCTGAGATTGGAGACACCATTGGATCATCAATCCATTTAGGCTATGCATGTCCTGCTGGTCGGTTGAAAATGTGCAGGATCTTAGGCTCTTCTTGTATACTGAGTTGTATCCCAAATTTCCGTCATCTTTTCTTTGTAGAGAGCTAGCAGCAGATGCGAACTTTGGTAACCGGTTATAATAATAAA]
[+] EMBL AK108053 [CCCTGTAGCATGAACCAGCTGGCGCTCACTCCCACCCCCAAGCGGCAGAAGGTGGAGGAGAGCGCGGATGGGAACGGGTGCAAGCATTGCGCCTGCAAGAAGTCGAGATGCTTGAAGCTCTATTGCCCATGCTTTGCTGGTGGAGGTTATTGTTCTGAAAAGTGTGGATGCCAACCATGCTTCAACAAGGCCTTATATGCAGAAACAGTTCAGACCACTCGCAAGGTGCTTCTTTCACGGCAGAAACGGATGTCACTGAAAATTAATCGAAGATCTGAGGCAAATGCGGAAGCTGTGGAAGATGCTCATCATTCTTCTTCTTCAACTCCGCCTAGGCGAGGTTGCAATTGCAAGAAATCAAGTTGCCTAAAGAAATACTGTGATTGCTACCAGGATGGGACTGGTTGCTCTTTGTTTTGCCGATGTGAGGACTGCAGGAATCCTTTCGGGAAAAATGAAGGCATAATGGCAGAAGAAAGTAAGCGCTTTTTATACACTGGCGCAGACCTGGACCACAGTGAGGATGAACAAGACTTTATCGTGGAACGTTCACCTCGCCTGCAGTCACCAATCTCAAAAGAGTCCTCCTTCCAGCAAACTCCCCCGCATATCAGAGCCACGAACAGAGATACACACATGTTCCCGCAGGCGATATCGCAGTGGCAGCCCCGCTCATGGCATTGCTCCAAGAGGCAGAGCAACGACCGGGTGATCGACGACTCAGGGGAGTACAAGAACTCGAATCACGACTGGCAGTTGGCCAAGCCAGAGGACAGCTACAGCATATCGAGATGCGTCCAGATCCTCAACGGCATGGCCGAGCTATCTCAGGTGGAGAAATCGGTTGCCCCCGATGTGTTCCTCCAGGCGGGGAACCGGGAAATATTCATCTCGCTTAACGGTGACGTCCGGGCCCTGTGGCTGAAACGCAAGATCCAGAACCTGACTTAGGGCATGCCATTTGTCACCTTAGTGTTGTTTTGGAGGCTGAGATTGGAGACACCATTGGATCATCAATCCATTTAGGCTATGCATGTCCTGCTGGTCGGTTGAAAATGTGCAGGATCTTAGGCTCTTCTTGTATACTGAGTTGTATCCCAAATTTCCGTCATCTTTTCTTTGTAGAGAGCTAGCAGCAGATGCGAACTTTGGTAACCGGTTATAATAATAAA]
[+] EMBL D43474 [ TTCTTCTTCAACTCCGCCTAGGCGAGGTTGCAATTGCAAGAAATCAAGTTGCCTAAAGAAATACTGTGATTGCTACCAGGGTGGGACTGGTTGCTCTTTGNTTTGCCGNTGTGAGGACTGCAGGNATCCTTTCGGGGAAAATGAAGGCA ]
[+] EMBL CA998386 [ ACGAACAGAGATACACACATGTTCCCGCAGGCGATATCGCAGTGGCAGCCCCGCTCATGGCATTGCTCCAAGAGGCAGAGCAACGACCGGGTGATCGACGACTCAGGGGAGTACAAGAACTCGAATCACGACTGGCAGTTGGCCAAGCCAGAGGACAGCTACACCATATCGAGATGCGTCCAGATCCTCAACGGCATGGCCGAGCTATCTCAGGTGGAGAAATCGGTTGCCCCCGATGTGTTCCTCCAGGCGGGGAACCGGGAAATATTCATCTCGCTTAACGGTGACGTCCGGGCCCTGTGGCTGAAACGCAAGATCCAGAACCTGACTTAGGGCATGCCATTTGTCACCTTAGTGTTGTTTTGGAGGCTGAGATTGGAGACACCATTGGATCATCAATCCATTTAGGCTATGCATGTCCTGCTGGTCGGTTGAAAATGTGCAGGATCTTAGGCTCTTCTTGTATACTGAGTTGTATCCCAAATTTCCGTCATCTTTTCTTTGTAGAGAGCTAGCAGCAGATGCGAACTTTGGTAACCGGCTATAATAATAA ]
[+] EMBL CA999380 [ AGATACACACATGTTCCCGCAGGCGATATCGCAGTGGCAGCCCCGCTCATGGCATTGCTCCAAGAGGCAGAGCAACGACCGGGTGATCGACGACTCAGGGGAGTACAAGAACTCGAATCACGACTGGCAGTTGGCCAAGCCAGAGGACAGCTACAGCATATCGAGATGCGTCCAGATCCTCAACGGCATGGCCGAGCTATCTCAGGTGGAGAAATCGGTTGCCCCCGATGTGTTCCTCCAGGCGGGGAACCGGGAAATATTCATCTCGCTTAACGGTGACGTCCG ]
consensusID : consensus_7931#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[GGCGCAGACTGGGGCCCCAGTGAGGATGACCAAGACTTTATCGTGGAACGTTCACCTTGCCTGCAGTCACCAATCTCAAAAGAGTCCTCCTTCCAGCAAACTCCCCCGCAGTATTAGAGCCACGAACAGAGATACACACATGTTCCCGCAGGCGATATCGCAGTGGCAGCCCCGCTCATGGCATTGCTCCAAGAGGCAGAGCAACGATCGGGTGATCGACGACTCAGGGGAGTACAAGAACTCGAATCACGACTGGCAGTTGGCCAAGCCAGAGGACAGCTACAGCATATCGAGATGCGTCCAGATCCTCAACGGCATGGCCGAGCTATCTCAGGTGGAGAAATCGGTTGCCCCCCATGTGTTCCTCCCGGCGGGGAACCGGGAAATATTCATCTCGCTTAACGGTGACGTCCGGGCCCTGTGGCTGAAACGCAAGATCCAGAACCTGACTTAGGGCATGCCATCTGTCCCCTTAGTGTTGTTTTGGAGGCTGAGATTGGAGACCCCATTGGATCATCAATCCATTTGGGCTATGCATGTCCTGCTGGTCGGTTGAAAATGTGCAGGATCTTAGGCTCTTCTTGTATACTGAGTTGTATCCCAAATTTCCGTCATCTTTTCTTTGTAGAGAGCTAGCAGCAGATGCGAACTTTGGTAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA762746 [GGCGCAGACTGGGGCCCCAGTGAGGATGACCAAGACTTTATCGTGGAACGTTCACCTTGCCTGCAGTCACCAATCTCAAAAGAGTCCTCCTTCCAGCAAACTCCCCCGCAGTATTAGAGCCACGAACAGAGATACACACATGTTCCCGCAGGCGATATCGCAGTGGCAGCCCCGCTCATGGCATTGCTCCAAGAGGCAGAGCAACGATCGGGTGATCGACGACTCAGGGGAGTACAAGAACTCGAATCACGACTGGCAGTTGGCCAAGCCAGAGGACAGCTACAGCATATCGAGATGCGTCCAGATCCTCAACGGCATGGCCGAGCTATCTCAGGTGGAGAAATCGGTTGCCCCCCATGTGTTCCTCCCGGCGGGGAACCGGGAAATATTCATCTCGCTTAACGGTGACGTCCGGGCCCTGTGGCTGAAACGCAAGATCCAGAACCTGACTTAGGGCATGCCATCTGTCCCCTTAGTGTTGTTTTGGAGGCTGAGATTGGAGACCCCATTGGATCATCAATCCATTTGGGCTATGCATGTCCTGCTGGTCGGTTGAAAATGTGCAGGATCTTAGGCTCTTCTTGTATACTGAGTTGTATCCCAAATTTCCGTCATCTTTTCTTTGTAGAGAGCTAGCAGCAGATGCGAACTTTGGTAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7931#0 CCCTGTAGCATGAACCAGCTGGCGCTCACTCCCACCCCCAAGCGGCAGAAGGTGGAGGAG 60
consensus_7931#1 ------------------------------------------------------------
consensus_7931#0 AGCGCGGATGGGAACGGGTGCAAGCATTGCGCCTGCAAGAAGTCGAGATGCTTGAAGCTC 120
consensus_7931#1 ------------------------------------------------------------
consensus_7931#0 TATTGCCCATGCTTTGCTGGTGGAGGTTATTGTTCTGAAAAGTGTGGATGCCAACCATGC 180
consensus_7931#1 ------------------------------------------------------------
consensus_7931#0 TTCAACAAGGCCTTATATGCAGAAACAGTTCAGACCACTCGCAAGGTGCTTCTTTCACGG 240
consensus_7931#1 ------------------------------------------------------------
consensus_7931#0 CAGAAACGGATGTCACTGAAAATTAATCGAAGATCTGAGGCAAATGCGGAAGCTGTGGAA 300
consensus_7931#1 ------------------------------------------------------------
consensus_7931#0 GATGCTCATCATTCTTCTTCTTCAACTCCGCCTAGGCGAGGTTGCAATTGCAAGAAATCA 360
consensus_7931#1 ------------------------------------------------------------
consensus_7931#0 AGTTGCCTAAAGAAATACTGTGATTGCTACCAGGATGGGACTGGTTGCTCTTTGTTTTGC 420
consensus_7931#1 ------------------------------------------------------------
consensus_7931#0 CGATGTGAGGACTGCAGGAATCCTTTCGGGAAAAATGAAGGCATAATGGCAGAAGAAAGT 480
consensus_7931#1 ------------------------------------------------------------
consensus_7931#0 AAGCGCTTTTTATACACTGGCGCAGACCTGGACCACAGTGAGGATGAACAAGACTTTATC 540
consensus_7931#1 ------------------GGCGCAGACTGGGGCCCCAGTGAGGATGACCAAGACTTTATC 42
********* ** ** ************ ************
consensus_7931#0 GTGGAACGTTCACCTCGCCTGCAGTCACCAATCTCAAAAGAGTCCTCCTTCCAGCAAACT 600
consensus_7931#1 GTGGAACGTTCACCTTGCCTGCAGTCACCAATCTCAAAAGAGTCCTCCTTCCAGCAAACT 102
*************** ********************************************
consensus_7931#0 CCCCCGCA-TATCAGAGCCACGAACAGAGATACACACATGTTCCCGCAGGCGATATCGCA 659
consensus_7931#1 CCCCCGCAGTATTAGAGCCACGAACAGAGATACACACATGTTCCCGCAGGCGATATCGCA 162
******** *** ***********************************************
consensus_7931#0 GTGGCAGCCCCGCTCATGGCATTGCTCCAAGAGGCAGAGCAACGACCGGGTGATCGACGA 719
consensus_7931#1 GTGGCAGCCCCGCTCATGGCATTGCTCCAAGAGGCAGAGCAACGATCGGGTGATCGACGA 222
********************************************* **************
consensus_7931#0 CTCAGGGGAGTACAAGAACTCGAATCACGACTGGCAGTTGGCCAAGCCAGAGGACAGCTA 779
consensus_7931#1 CTCAGGGGAGTACAAGAACTCGAATCACGACTGGCAGTTGGCCAAGCCAGAGGACAGCTA 282
************************************************************
consensus_7931#0 CAGCATATCGAGATGCGTCCAGATCCTCAACGGCATGGCCGAGCTATCTCAGGTGGAGAA 839
consensus_7931#1 CAGCATATCGAGATGCGTCCAGATCCTCAACGGCATGGCCGAGCTATCTCAGGTGGAGAA 342
************************************************************
consensus_7931#0 ATCGGTTGCCCCCGATGTGTTCCTCCAGGCGGGGAACCGGGAAATATTCATCTCGCTTAA 899
consensus_7931#1 ATCGGTTGCCCCCCATGTGTTCCTCCCGGCGGGGAACCGGGAAATATTCATCTCGCTTAA 402
************* ************ *********************************
consensus_7931#0 CGGTGACGTCCGGGCCCTGTGGCTGAAACGCAAGATCCAGAACCTGACTTAGGGCATGCC 959
consensus_7931#1 CGGTGACGTCCGGGCCCTGTGGCTGAAACGCAAGATCCAGAACCTGACTTAGGGCATGCC 462
************************************************************
consensus_7931#0 ATTTGTCACCTTAGTGTTGTTTTGGAGGCTGAGATTGGAGACACCATTGGATCATCAATC 1019
consensus_7931#1 ATCTGTCCCCTTAGTGTTGTTTTGGAGGCTGAGATTGGAGACCCCATTGGATCATCAATC 522
** **** ********************************** *****************
consensus_7931#0 CATTTAGGCTATGCATGTCCTGCTGGTCGGTTGAAAATGTGCAGGATCTTAGGCTCTTCT 1079
consensus_7931#1 CATTTGGGCTATGCATGTCCTGCTGGTCGGTTGAAAATGTGCAGGATCTTAGGCTCTTCT 582
***** ******************************************************
consensus_7931#0 TGTATACTGAGTTGTATCCCAAATTTCCGTCATCTTTTCTTTGTAGAGAGCTAGCAGCAG 1139
consensus_7931#1 TGTATACTGAGTTGTATCCCAAATTTCCGTCATCTTTTCTTTGTAGAGAGCTAGCAGCAG 642
************************************************************
consensus_7931#0 ATGCGAACTTTGGTAACCGGTTATAATAATAAA----- 1172
consensus_7931#1 ATGCGAACTTTGGTAAAAAAAAAAAAAAAAAAAAAAAA 680
**************** * ** ** ***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||