These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_794#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 779 fasta sequence [TCTAATATTCAAAATATTTCTGAACAATACCACATGCATCCACAACATTGACTACAGAAGTAGTTAGATCTAGCAAAATACAATTACAATAATCCATATGTCAAATAAGATCATCCAGGGAAAAAATCCATATGTCAAATATAATTACATTTAAATCAACAAATATATCCAAAGGCAAAGGCTATGGTTGTGATTCAAGGCAGTAGCCTATTTAGATGTGAATCTTTTGACATTTTAATACATTCATGGCATTTACAGTAATTAATAAGCCATTGTTTGTTCAATGTAAGGCTTCAACTTGACATGGTATTTGATATCGCAGTGTCGCCATGTTGTCAGGTCCATTTTTCCTATAGTAGTGGAATCAGGCAATATGTTGAAGGGCACTACCAAGTGATAACAGTGGAGTTTTAAGAAAGGGACATAACAGAAGCAAAAGATCTTCAGGTGCATGATCTCCTTGAGATTCCATCCGAAACCAGTGAACCAGATCCATCATTTGAGGTTGTAGCTGTGTAAGCCGGCACTGATGTACCATTAGCATCCATACAAGGAGTTGGGATACCAGCAAGTTTAGACACAACACTGTGCAACCAATCAAGTTGTTTTTGTTGAGATTCAAGCTGGTTTTGTTGTACTGCAAGTTGGTTTTGCTGTACTGCAACAGTTTGTTTTGTAGAAGCCAACTCTTCTTCCATCTGTTGATAGGTCCTTGTTGAAGTTGATGTAGCTCTTCTATTAGGTTTTGGGCCATGACCTCTCCCTCTAATATACCCATA] [+] EMBL CB632437 [TCTAATATTCAAAATATTTCTGAACAATACCACATGCATCCACAACATTGACTACAGAAGTAGTTAGATCTAGCAAAATACAATTACAATAATCCATATGTCAAATAAGATCATCCAGGGAAAAAATCCATATGTCAAATATAATTACATTTAAATCAACAAATATATCCAAAGGCAAAGGCTATGGTTGTGATTCAAGGCAGTAGCCTATTTAGATGTGAATCTTTTGACATTTTAATACATTCATGGCATTTACAGTAATTAATAAGCCATTGTTTGTTCAATGTAAGGCTTCAACTTGACATGGTATTTGATATCGCAGTGTCGCCATGTTGTCAGGTCCATTTTTCCTATAGTAGTGGAATCAGGCAATATGTTGAAGGGCACTACCAAGTGATAACAGTGGAGTTTTAAGAAAGGGACATAACAGAAGCAAAAGATCTTCAGGTGCATGATCTCCTTGAGATTCCATCCGAAACCAGTGAACCAGATCCATCATTTGAGGTTGTAGCTGTGTAAGCCGGCACTGATGTACCATTAGCATCCATACAAGGAGTTGGGATACCAGCAAGTTTAGACACAACACTGTGCAACCAATCAAGTTGTTTTTGTTGAGATTCAAGCTGGTTTTGTTGTACTGCAAGTTGGTTTTGCTGTACTGCAACAGTTTGTTTTGTAGAAGCCAACTCTTCTTCCATCTGTTGATAGGTCCTTGTTGAAGTTGATGTAGCTCTTCTATTAGGTTTTGGGCCATGACCTCTCCCTCTAATATACCCATA] consensusID : consensus_794#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [TTTTTTTTTTTTTTTAGTTAGATCTAGCAAAATACAATTACAATAATCCATATGTCAAATAAGATCATCCAGGGAAAAAATCCATATGTCAAATATAATTACATTTAAATCAACAAATATATCCAAAGGCAAAGGCTATGGTTGTGATTCAAGGCAGTAGCCTATTTAGATGTGAATCTTTTGACATTTTAATACATTCATGGCATTTACAGTAATTAATAAGCCATTGTTTGTTCAATGTAAGGCTTCAACTTGACATGGTATTTGATATCGCAGTGTCGCCATGTTGTCAGGTCCATTTTTCCTATAGTAGTGGAATCAGGCAATATGTTGAAGGGCACTACCAAGTGATAACAGTGGAGTTTTAAGAAAGGGACATAACAGAAGCAAAAGATCTTCAGGTGCATGATCTCCTTGAGATTCCATCCGAAACCAGTGAACCAGATCCATCATTTGAGGTTGTAGCTGTGTAAGCCGGCACTGATGTACCATTAGCATCCATACAAGGAGTTGGGATACCAGCAAGTTTAGACACAACACTGTGCAACCAATCAAGTTGTTTTTGTTGAGATTCAAGCTGGTTTTGTTGTACTGCAAGTTGGGTTTGCTGGACTGCAACAGTTTGTTTTGTAGAAGCCAACTCTTCTTCCATCTGTTGATAGGTCCTTGGTGAAAGTGATGTAACTCTTTTATTAGT] [+] EMBL CA759189 [TTTTTTTTTTTTTTTAGTTAGATCTAGCAAAATACAATTACAATAATCCATATGTCAAATAAGATCATCCAGGGAAAAAATCCATATGTCAAATATAATTACATTTAAATCAACAAATATATCCAAAGGCAAAGGCTATGGTTGTGATTCAAGGCAGTAGCCTATTTAGATGTGAATCTTTTGACATTTTAATACATTCATGGCATTTACAGTAATTAATAAGCCATTGTTTGTTCAATGTAAGGCTTCAACTTGACATGGTATTTGATATCGCAGTGTCGCCATGTTGTCAGGTCCATTTTTCCTATAGTAGTGGAATCAGGCAATATGTTGAAGGGCACTACCAAGTGATAACAGTGGAGTTTTAAGAAAGGGACATAACAGAAGCAAAAGATCTTCAGGTGCATGATCTCCTTGAGATTCCATCCGAAACCAGTGAACCAGATCCATCATTTGAGGTTGTAGCTGTGTAAGCCGGCACTGATGTACCATTAGCATCCATACAAGGAGTTGGGATACCAGCAAGTTTAGACACAACACTGTGCAACCAATCAAGTTGTTTTTGTTGAGATTCAAGCTGGTTTTGTTGTACTGCAAGTTGGGTTTGCTGGACTGCAACAGTTTGTTTTGTAGAAGCCAACTCTTCTTCCATCTGTTGATAGGTCCTTGGTGAAAGTGATGTAACTCTTTTATTAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_794#0 TCTAATATTCAAAATATTTCTGAACAATACCACATGCATCCACAACATTGACTACAGAAG 60 consensus_794#1 ----------------------------------------------TTTTTTTTTTTTTT 14 ** * consensus_794#0 TAGTTAGATCTAGCAAAATACAATTACAATAATCCATATGTCAAATAAGATCATCCAGGG 120 consensus_794#1 TAGTTAGATCTAGCAAAATACAATTACAATAATCCATATGTCAAATAAGATCATCCAGGG 74 ************************************************************ consensus_794#0 AAAAAATCCATATGTCAAATATAATTACATTTAAATCAACAAATATATCCAAAGGCAAAG 180 consensus_794#1 AAAAAATCCATATGTCAAATATAATTACATTTAAATCAACAAATATATCCAAAGGCAAAG 134 ************************************************************ consensus_794#0 GCTATGGTTGTGATTCAAGGCAGTAGCCTATTTAGATGTGAATCTTTTGACATTTTAATA 240 consensus_794#1 GCTATGGTTGTGATTCAAGGCAGTAGCCTATTTAGATGTGAATCTTTTGACATTTTAATA 194 ************************************************************ consensus_794#0 CATTCATGGCATTTACAGTAATTAATAAGCCATTGTTTGTTCAATGTAAGGCTTCAACTT 300 consensus_794#1 CATTCATGGCATTTACAGTAATTAATAAGCCATTGTTTGTTCAATGTAAGGCTTCAACTT 254 ************************************************************ consensus_794#0 GACATGGTATTTGATATCGCAGTGTCGCCATGTTGTCAGGTCCATTTTTCCTATAGTAGT 360 consensus_794#1 GACATGGTATTTGATATCGCAGTGTCGCCATGTTGTCAGGTCCATTTTTCCTATAGTAGT 314 ************************************************************ consensus_794#0 GGAATCAGGCAATATGTTGAAGGGCACTACCAAGTGATAACAGTGGAGTTTTAAGAAAGG 420 consensus_794#1 GGAATCAGGCAATATGTTGAAGGGCACTACCAAGTGATAACAGTGGAGTTTTAAGAAAGG 374 ************************************************************ consensus_794#0 GACATAACAGAAGCAAAAGATCTTCAGGTGCATGATCTCCTTGAGATTCCATCCGAAACC 480 consensus_794#1 GACATAACAGAAGCAAAAGATCTTCAGGTGCATGATCTCCTTGAGATTCCATCCGAAACC 434 ************************************************************ consensus_794#0 AGTGAACCAGATCCATCATTTGAGGTTGTAGCTGTGTAAGCCGGCACTGATGTACCATTA 540 consensus_794#1 AGTGAACCAGATCCATCATTTGAGGTTGTAGCTGTGTAAGCCGGCACTGATGTACCATTA 494 ************************************************************ consensus_794#0 GCATCCATACAAGGAGTTGGGATACCAGCAAGTTTAGACACAACACTGTGCAACCAATCA 600 consensus_794#1 GCATCCATACAAGGAGTTGGGATACCAGCAAGTTTAGACACAACACTGTGCAACCAATCA 554 ************************************************************ consensus_794#0 AGTTGTTTTTGTTGAGATTCAAGCTGGTTTTGTTGTACTGCAAGTTGGTTTTGCTGTACT 660 consensus_794#1 AGTTGTTTTTGTTGAGATTCAAGCTGGTTTTGTTGTACTGCAAGTTGGGTTTGCTGGACT 614 ************************************************ ******* *** consensus_794#0 GCAACAGTTTGTTTTGTAGAAGCCAACTCTTCTTCCATCTGTTGATAGGTCCTTGTTGAA 720 consensus_794#1 GCAACAGTTTGTTTTGTAGAAGCCAACTCTTCTTCCATCTGTTGATAGGTCCTTGGTGAA 674 ******************************************************* **** consensus_794#0 GTTGATGTAGCTCTTCTATTAGGTTTTGGGCCATGACCTCTCCCTCTAATATACCCATA 779 consensus_794#1 AGTGATGTAACTCTTTTATTAGT------------------------------------ 697 ******* ***** ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||