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Oryza sativa
cluster # 7940 cluster # 7940       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7940#0 length = 1006 sequences # 5  

consensusID : consensus_7940#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1006
fasta sequence
                              [CCCAAGTCCAACCAAGAGTGGAGCAGAGACTCACTGGAGACCAAACCCTAGCTGCCATGGCAATGGCGACGTCGATCTCCGCCGGCTTCGGCGGCGAGCCCGGCGCGGTGCTCGCCCCGTCCGCCTCCGTCCTCCCCGCCCCGCGCCGGCGCAACCCCGCCACCAGCTCCAAGGCACAGTTTAGTTCATTTCCTCGTGGACGATCTTGCAACATCATGCTTACTCCTAAGCATCTAGGCATTGAGCACCAAAGCTGTTCAAAGAGCTCCATTCAGACTTTTGCTCTTTCAAGGAATGACTTCTCTCCTATTGCTCAAGAGGTGGAAGGCTTTCTTCACAACATTGTTAACATGGGGTTTCTTGATCGTCTGAAATTAGCATGGAAGATAATCTTCCCAGCACCAAGCATTAA-GGAGAACTCTAATGCAAACATCGCAAAGCAGAGGCTTAAGATGATACTGTTCTCCGACAGGTGTGAAGTGAGTGACGAGGCAAAGAAGAAGATTGTTGAGAACATCGTTGAGGCACTCTCTGAATTCGTGGAGATAGAATCACGAGACAACGTCCAGGTGGATATCTCAACTGATGCTGGCCTTGGCACAGTATATTCTGTGACCGTTCCTGTTCGCCGTGTCAAGCCTGAGTACCAGGAATCTGAAGAGCAGTACAGAGGGAAGATCGTAGGTGTTGACTTCAAGGACA-CTGGAGAAACATCAGGCAGCGTCGACGTTACGTTCGATTTCTTCGTGCCCAACAAGAACTACTGACCGTTGTATTCCCCTTTTGCTTCCGAGTATCCCAGAACTCCTTGGTTAGAATGTTCAATTTGTTGAAGGCTTTCTTCGCAATCTTGGTTAGTCTAATGTACATATCTAGGCTTTTGTTTGTCTCTGCGTTTCATGTAATTTTATTTTGAATTTTTGTTCTGAAGGTGGCAAATATCAGTACCGTGGGGTTAGTCCAACTTGGATTTTCCGAAGAAATGTTTATTTATAAGAAAATAACG]

[+] EMBL AK070044             [CCCAAGTCCAACCAAGAGTGGAGCAGAGACTCACTGGAGACCAAACCCTAGCTGCCATGGCAATGGCGACGTCGATCTCCGCCGGCTTCGGCGGCGAGCCCGGCGCGGTGCTCGCCCCGTCCGCCTCCGTCCTCCCCGCCCCGCGCCGGCGCAACCCCGCCACCAGCTCCAAGGCACAGTTTAGTTCATTTCCTCGTGGACGATCTTGCAACATCATGCTTACTCCTAAGCATCTAGGCATTGAGCACCAAAGCTGTTCAAAGAGCTCCATTCAGACTTTTGCTCTTTCAAGGAATGACTTCTCTCCTATTGCTCAAGAGGTGGAAGGCTTTCTTCACAACATTGTTAACATGGGGTTTCTTGATCGTCTGAAATTAGCATGGAAGATAATCTTCCCAGCACCAAGCATTAA GGAGAACTCTAATGCAAACATCGCAAAGCAGAGGCTTAAGATGATACTGTTCTCCGACAGGTGTGAAGTGAGTGACGAGGCAAAGAAGAAGATTGTTGAGAACATCGTTGAGGCACTCTCTGAATTCGTGGAGATAGAATCACGAGACAACGTCCAGGTGGATATCTCAACTGATGCTGGCCTTGGCACAGTATATTCTGTGACCGTTCCTGTTCGCCGTGTCAAGCCTGAGTACCAGGAATCTGAAGAGCAGTACAGAGGGAAGATCGTAGGTGTTGACTTCAAGGACA CTGGAGAAACATCAGGCAGCGTCGACGTTACGTTCGATTTCTTCGTGCCCAACAAGAACTACTGACCGTTGTATTCCCCTTTTGCTTCCGAGTATCCCAGAACTCCTTGGTTAGAATGTTCAATTTGTTGAAGGCTTTCTTCGCAATCTTGGTTAGTCTAATGTACATATCTAGGCTTTTGTTTGTCTCTGCGTTTCATGTAATTTTATTTTGAATTTTTGTTCTGAAGGTGGCAAATATCAGTACCGTGGGGTTAGTCCAACTTGGATTTTCCGAAGAAAT                      ]
[+] EMBL AK058897             [                            ACTCACTGGAGACCAAACCCTAGCTGCCATGGCAATGGCGACGTCGATCTCCGCCGGCTTCGGCGGCGAGCCCGGCGCGGTGCTCGCCCCGTCCGCCTCCGTCCTCCCCGCCCCGCGCCGGCGCAACCCCGCCACCAGCTCCAAGGCACAGTTTAGTTCATTTCCTCGTGGACGATCTTGCAACATCATGCTTACTCCTAAGCATCTAGGCATTGAGCACCAAAGCTGTTCAAAGAGCTCCATTCAGACTTTTGCTCTTTCAAGGAATGACTTCTCTCCTATTGCTCAAGAGGTGGAAGGCTTTCTTCACAACATTGTTAACATGGGGTTTCTTGATCGTCTGAAATTAGCATGGAAGATAATCTTCCCAGCACCAAGCATTAA GGAGAACTCTAATGCAAACATCGCAAAGCAGAGGCTTAAGATGATACTGTTCTCCGACAGGTGTGAAGTGAGTGACGAGGCAAAGAAGAAGATTGTTGAGAACATCGTTGAGGCACTCTCTGAATTCGTGGAGATAGAATCACGAGACAACGTCCAGGTGGATATCTCAACTGATGCTGGCCTTGGCACAGTATATTCTGTGACCGTTCCTGTTCGCCGTGTCAAGCCTGAGTACCAGGAATCTGAAGAGCAGTACAGAGGGAAGATCGTAGGTGTTGACTTCAAGGACA CTGGAGAAACATCAGGCAGCGTCGACGTTACGTTCGATTTCTTCGTGCCCAACAAGAACTACTGACCGTTGTATTCCCCTTTTGCTTCCGAGTATCCCAGAACTCCTTGGTTAGAATGTTCAATTTGTTGAAGGCTTTCTTCGCAATCTTGGTTAGTCTAATGTACATATCTAGGCTTTTGTTTGTCTCTGCGTTTCATGTAATTTTATTTTGAATTTTTGTTCTGAAGGTGGCAAATATCAGTACCGTGGGGTTAGTCCAACTTGGATTTTCCGAAGAAATGTTTATTTATAAGAAAATAACG]
[+] EMBL CF303273             [                                          AAACCCTAGCTGCCATGGCAATGGCGACGTCGATCTCCGCCGGCTTCGGCGGCGAGCCCGGCGCGGTGCTCGCCCCGTCCGCCTCCGTCCTCCCCGCCCCGCGCCGGCGCAACCCCGCCACCAGCTCCAAGGCACAGTTTATTTCATTTCCTCGTGGACGATCTTGCAACATCATGCTTACTCCTAAGCATCTATGCATTGAGCACCAAAGCTGTTCAAAGAGCTCCATTCAGACTTTTGCTCTTTCAAGGAATGACTTCTCTCCTATTGCTCAAGAGGTGGAAGGCTTTCTTCACAACATTGTTAACATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BI805532             [                                                                                                                                                                                                                                                                                                                                                                   GTTTC TGATCGTCTAAATTTACCATGGAAGATAATCTTCCCA CCCCAA CCTTAAGGGAGAACTCTAATGC AACATCGCAA  CAGAGGCTTAAGATGATACTGTTCTCC ACAGGTGTGAAGTGAGTGACGA GCCAAGAAGAAGATTGTTGAGAACATCGTTGA GCACTCTCTGAATTCGTGGAGATAGAATCACGAGAC ACGTCCAGGTGGATATCTCAACTGATGCTGGCCTTGGCACAGTATATTCTGTGACCGTTCCTGTTCGCCGTGTCAAGCCTGAGTACCAGGAATCTGAAGAGCAGTACAGAGGGAAGATCGTAGGTGTTGACTTCAAGGACACCTGGAGAAACATCAGGCAGCGTCGACGTTACGTTCGATTTCTTCGTGCCCCAC AGAACTACTGACCGTTGTATTCCCCTTTTGCTTCCGAGTATCCCAGAACTCCTTGGTTAGAATGTTC ATTTGTTGAAGGCTTTCTTCGC ATCTTGGTTAGTCTAATGTACATATCTAGGCTTTAGTTTGTCTCTGCGTTTCATGTAATTTTATTTTGAATTTTTGTTCTGAAGGTGGC AATATCAGTACCGTGGGGTTAGTCC ACTTGGATTTTCCGAAGAAATGTTTATTTATA           ]
[+] EMBL CA767352             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTAAGATGATACTGTTCTCCGACAGGTGTGAAGTGAGTGACGAGGCAAAGAAGAAGATTGTTGAGAACATCGTTGAGGCACTCTCTGAATTCGTGGAGATAGAATCACGAGACAACGTCCAGGTGGATATCTCAACTGATCCTGGCCTTGGCACAGTATATTCTGTGACCGTTCCTGTTCGCCGTGTCAAGCCTGAGTACCAGGAATCTGAAGAGCAGTACAGAGGGAAGATCGTAGGTGTTGACTTCAAGGACA CTGGAGAAACATCAGGCCGCGTCGATGTTACGTTCGATTTCTTCGTGCCCAACAAGAACTACTGACCGTTGTATTCCCCTTTTGCTTCCGAGTATCCCAGAACTCCTTGGTTAGAATGTTCAATTTGTTGAAGGCTTTCTTCGCAATCTTGGTTAGTCTAATGTACATATCTAGGCTTTTGTTTGTCTCTGCGTTTCATGTAATTTTATTTTGAATTTTTGTTCTGAAGGTGGCAAATATCAGTACCGTGGGGTTAGTCCAACTTGGATTTTCCGAAGAAATGTTTATTT              ]


>consensus_7940#0 CCCAAGTCCAACCAAGAGTGGAGCAGAGACTCACTGGAGACCAAACCCTAGCTGCCATGG CAATGGCGACGTCGATCTCCGCCGGCTTCGGCGGCGAGCCCGGCGCGGTGCTCGCCCCGT CCGCCTCCGTCCTCCCCGCCCCGCGCCGGCGCAACCCCGCCACCAGCTCCAAGGCACAGT TTAGTTCATTTCCTCGTGGACGATCTTGCAACATCATGCTTACTCCTAAGCATCTAGGCA TTGAGCACCAAAGCTGTTCAAAGAGCTCCATTCAGACTTTTGCTCTTTCAAGGAATGACT TCTCTCCTATTGCTCAAGAGGTGGAAGGCTTTCTTCACAACATTGTTAACATGGGGTTTC TTGATCGTCTGAAATTAGCATGGAAGATAATCTTCCCAGCACCAAGCATTAAGGAGAACT CTAATGCAAACATCGCAAAGCAGAGGCTTAAGATGATACTGTTCTCCGACAGGTGTGAAG TGAGTGACGAGGCAAAGAAGAAGATTGTTGAGAACATCGTTGAGGCACTCTCTGAATTCG TGGAGATAGAATCACGAGACAACGTCCAGGTGGATATCTCAACTGATGCTGGCCTTGGCA CAGTATATTCTGTGACCGTTCCTGTTCGCCGTGTCAAGCCTGAGTACCAGGAATCTGAAG AGCAGTACAGAGGGAAGATCGTAGGTGTTGACTTCAAGGACACTGGAGAAACATCAGGCA GCGTCGACGTTACGTTCGATTTCTTCGTGCCCAACAAGAACTACTGACCGTTGTATTCCC CTTTTGCTTCCGAGTATCCCAGAACTCCTTGGTTAGAATGTTCAATTTGTTGAAGGCTTT CTTCGCAATCTTGGTTAGTCTAATGTACATATCTAGGCTTTTGTTTGTCTCTGCGTTTCA TGTAATTTTATTTTGAATTTTTGTTCTGAAGGTGGCAAATATCAGTACCGTGGGGTTAGT CCAACTTGGATTTTCCGAAGAAATGTTTATTTATAAGAAAATAACG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)