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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7948#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1308 fasta sequence
[CGCCGCCGCACCCGCCTCCACCATGGCGGCCGTCTCGAGGGGCCTCCTCGCGCGCCTCCGCCACCTCTCCATCGCGGGCCCACGCCTGCCCCCTTGCTGCCGCCCCTTCTCCGCCGAGCCCCTCGTCTCCCACCCCGACGACGACGACGCCGCCGCCGGGGGCGGCGGCGGCGGCGGCGAGGGATCGGGAGGGGGACGGATCATAGAGGCTCGGGCGGGGGTGATGGGCCCGGACTCGCGGCGGACCGGCGTGATCGGCGTCAAGTGCGGCATGTCGGCGATGTGGGACAAGTGGGGCGCCAAGGTGCCCATCACCGTCCTCTGGGTCGACGACAACGTCGTCTGCCAGGTCAAGACCGCCGAGAAGGAGGGGTTCTTCGCGCTTCAGCTTGGAGCAGGCCAAAAGAAGGAAAAACATCTAACAAAACCTGAAGTGGGCCACTTCAGAGCACAAGGAGTCCCTCTAAAGAGAAAACTAAGGGAGTTTCCTGTTACTGAAGATGCACTTATTCCTCTTGGAACAACAATCACAGTTCGCCATTTTGTGCCCGGACAATTTGTGGATGTTACTGGAATCACAAAGGGCAAAGGTTTTGCGGGTGGTATGAAAAGACATGGTTTTAGTGGGATGCCTGCATCACATGGTGCATCTCTATCACATCGGAGCATCGGTTCTACTGGTCAAAGAGATGCTCCTGGAAGGGTCTTCAAAAACAGAAAGATGCCTGGACGTATGGGTGGTGTACAGCGCACCGTGAAAAATGTATGGGTTTATCAAATAGACCCTGCCAGGAACTTATTGTATCTGAAAGGCCAGGTTCCTGGTCCTCAAGGCAGCTTTGTTTTTGTTAAGGACTCAATATACAAGAAACCCGACATAGCTAAGCTGCCTTTCCCAACATATTTCTCACAAGAAGGTGAGTCGGAGGAGCTCCTCGTCGCTGATCTTGGTGACATCGACCCATTCATGGTAGCGGATTAAGATTAGGGCCTACTTTGGAAGGGTCCTTTTGTTTTCTGTGCACTTCAGCTTGACCATCCGACAAAATTGTTAAATTTTGCATGGATATATGAGTAGTTGCTGGATTGCGAGTCATCCCATTACTGGCCCGCCTCTGATCAATGTTGTTCCATGTACACTACTTGGCAAATGTGCCAGGGCCCTAACTCGATTAGGGTTTTGAGCTGATTGTTTGACAAAATGGAACTTTTTTGTTCAATAATTTGTGTAATCTAAGCTTCAGATAGATATATAAAATGGGAAAGATTCACCGCAGAGATAGAAAAAAAAAAAANAAAAAAAAAAAA]
[+] EMBL AK073778 [CGCCGCCGCACCCGCCTCCACCATGGCGGCCGTCTCGAGGGGCCTCCTCGCGCGCCTCCGCCACCTCTCCATCGCGGGCCCACGCCTGCCCCCTTGCTGCCGCCCCTTCTCCGCCGAGCCCCTCGTCTCCCACCCCGACGACGACGACGCCGCCGCCGGGGGCGGCGGCGGCGGCGGCGAGGGATCGGGAGGGGGACGGATCATAGAGGCTCGGGCGGGGGTGATGGGCCCGGACTCGCGGCGGACCGGCGTGATCGGCGTCAAGTGCGGCATGTCGGCGATGTGGGACAAGTGGGGCGCCAAGGTGCCCATCACCGTCCTCTGGGTCGACGACAACGTCGTCTGCCAGGTCAAGACCGCCGAGAAGGAGGGGTTCTTCGCGCTTCAGCTTGGAGCAGGCCAAAAGAAGGAAAAACATCTAACAAAACCTGAAGTGGGCCACTTCAGAGCACAAGGAGTCCCTCTAAAGAGAAAACTAAGGGAGTTTCCTGTTACTGAAGATGCACTTATTCCTCTTGGAACAACAATCACAGTTCGCCATTTTGTGCCCGGACAATTTGTGGATGTTACTGGAATCACAAAGGGCAAAGGTTTTGCGGGTGGTATGAAAAGACATGGTTTTAGTGGGATGCCTGCATCACATGGTGCATCTCTATCACATCGGAGCATCGGTTCTACTGGTCAAAGAGATGCTCCTGGAAGGGTCTTCAAAAACAGAAAGATGCCTGGACGTATGGGTGGTGTACAGCGCACCGTGAAAAATGTATGGGTTTATCAAATAGACCCTGCCAGGAACTTATTGTATCTGAAAGGCCAGGTTCCTGGTCCTCAAGGCAGCTTTGTTTTTGTTAAGGACTCAATATACAAGAAACCCGACATAGCTAAGCTGCCTTTCCCAACATATTTCTCACAAGAAGGTGAGTCGGAGGAGCTCCTCGTCGCTGATCTTGGTGACATCGACCCATTCATGGTAGCGGATTAAGATTAGGGCCTACTTTGGAAGGGTCCTTTTGTTTTCTGTGCACTTCAGCTTGACCATCCGACAAAATTGTTAAATTTTGCATGGATATATGAGTAGTTGCTGGATTGCGAGTCATCCCATTACTGGCCCGCCTCTGATCAATGTTGTTCCATGTACACTACTTGGCAAATGTGCCAGGGCCCTAACTCGATTAGGGTTTTGAGCTGATTGTTTGACAAAATGGAACTTTTTTGTTCAATAATTTGTGTAATCTAAGCTTCAGATAGATATATAAAATGGGAAA ]
[+] EMBL AK101781 [ CGCACCCGCCTCCACCATGGCGGCCGTCTCGAGGGGCCTCCTCGCGCGCCTCCGCCACCTCTCCATCGCGGGCCCACGCCTGCCCCCTTGCTGCCGCCCCTTCTCCGCCGAGCCCCTCGTCTCCCACCCCGACGACGACGACGCCGCCGCCGGGGGCGGCGGCGGCGGCGGCGAGGGATCGGGAGGGGGACGGATCATAGAGGCTCGGGCGGGGGTGATGGGCCCGGACTCGCGGCGGACCGGCGTGATCGGCGTCAAGTGCGGCATGTCGGCGATGTGGGACAAGTGGGGCGCCAAGGTGCCCATCACCGTCCTCTGGGTCGACGACAACGTCGTCTGCCAGGTCAAGACCGCCGAGAAGGAGGGGTTCTTCGCGCTTCAGCTTGGAGCAGGCCAAAAGAAGGAAAAACATCTAACAAAACCTGAAGTGGGCCACTTCAGAGCACAAGGAGTCCCTCTAAAGAGAAAACTAAGGGAGTTTCCTGTTACTGAAGATGCACTTATTCCTCTTGGAACAACAATCACAGTTCGCCATTTTGTGCCCGGACAATTTGTGGATGTTACTGGAATCACAAAGGGCAAAGGTTTTGCGGGTGGTATGAAAAGACATGGTTTTAGTGGGATGCCTGCATCACATGGTGCATCTCTATCACATCGGAGCATCGGTTCTACTGGTCAAAGAGATGCTCCTGGAAGGGTCTTCAAAAACAGAAAGATGCCTGGACGTATGGGTGGTGTACAGCGCACCGTGAAAAATGTATGGGTTTATCAAATAGACCCTGCCAGGAACTTATTGTATCTGAAAGGCCAGGTTCCTGGTCCTCAAGGCAGCTTTGTTTTTGTTAAGGACTCAATATACAAGAAACCCGACATAGCTAAGCTGCCTTTCCCAACATATTTCTCACAAGAAGGTGAGTCGGAGGAGCTCCTCGTCGCTGATCTTGGTGACATCGACCCATTCATGGTAGCGGATTAAGATTAGGGCCTACTTTGGAAGGGTCCTTTTGTTTTCTGTGCACTTCAGCTTGACCATCCGACAAAATTGTTAAATTTTGCATGGATATATGAGTAGTTGCTGGATTGCGAGTCATCCCATTACTGGCCCGCCTCTGATCAATGTTGTTCCATGTACACTACTTGGCAAATGTGCCAGGGCCCTAACTCGATTAGGGTTTTGAGCTGATTGTTTGACAAAATGGAACTTTTTTGTTCAATAATTTGTGTAATCTAAGCTTCAGATAGATATATAAAATGGGAAAG ]
[+] EMBL CA766052 [ TGGTCAAAGAGATGCTCCTGGAAGGGTCTTCAAAAACAGAAAGATGCCTGGACGTATGGGTGGTGTACAGCGCACCGTGAAAAATGTATGGGTTTATCAAATAGACCCTGCCAGGAACTTATTGTATCTGAAAGGCCAGGTTCCTGGTCCTCAAGGCAGCTTTGTTTTTGTTAAGGACTCAATATACAAGAAACCCGACATAGCTAAGCTGCCTTTCCCAACATATTTCTCACAAGAAGGTGAGTCGGAGGAGCTCCTCGTCGCTGATCTTGGTGACATCGACCCATTCATGGTAGCGGATTAAGATTAGGGCCTACTTTGGAAGGGTCCTTTTGTTTTCTGTGCACTTCAGCTTGACCATCCGACAAAATTGTTAAATTTTGCATGGATATATGAGTAGTTGCTGGATTGCGAGTCATCCCATTACTGGCCCGCCTCTGATCAATGTTGTTCCATGTACACTACTTGGCAAATGTGCCAGGGCCCTAACTCGATTAGGGTTTTGAGCTGATTGTTTGACAAAATGGAACTTTTTTGTTCAATAATTTGTGTAATCTAAGCTTCAGATAGATATATAAAATGGGAAAGATTCACCGCAGAGATAG ]
[+] EMBL AU082474 [ AATTTTGCATGGATATATGAGTAGTTGCTGGATTGCGAGTCATCCCATTACTGGCCCGCCTCTGATCAATGTTGTTCCATGTACACTACTTGGCAAATGTGCCAGGGCCCTAACTCGATTAGGGTTTTGAGCTGATTGTTTGACAAAATGGAACTTTTTTGTTCAATAATTTGTGTAATCTAAGCTTCAGATAGATATATAAAATGGGAAAGATTCACCGCAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAA]
consensusID : consensus_7948#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence
[CGCACCCGCCTCCACCATGGCGGCCGTCTCGAGGGGCCTCCTCGCGCGCCTCCGCCACCTCTCCATCGCGGGCCCACGCCTGCCCCCTTGCTGNCGCCCCTTCTCCGCCGAGCCCCTCGTNTCCCACCCCGACGACGACGAGNCNGCCGCCGGGGGGGGGNGCNGNGNANGNGTNATCGGAAGGGGGACGGTTCATAGAGGCTCGGGCGGGGGTAATGGGCCCGGACTCGCGGCGGACCGGCNTGATCGGNGTCAAGTNCGGA]
[+] EMBL AU069389 [CGCACCCGCCTCCACCATGGCGGCCGTCTCGAGGGGCCTCCTCGCGCGCCTCCGCCACCTCTCCATCGCGGGCCCACGCCTGCCCCCTTGCTGNCGCCCCTTCTCCGCCGAGCCCCTCGTNTCCCACCCCGACGACGACGAGNCNGCCGCCGGGGGGGGGNGCNGNGNANGNGTNATCGGAAGGGGGACGGTTCATAGAGGCTCGGGCGGGGGTAATGGGCCCGGACTCGCGGCGGACCGGCNTGATCGGNGTCAAGTNCGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7948#0 CGCCGCCGCACCCGCCTCCACCATGGCGGCCGTCTCGAGGGGCCTCCTCGCGCGCCTCCG 60
consensus_7948#1 ------CGCACCCGCCTCCACCATGGCGGCCGTCTCGAGGGGCCTCCTCGCGCGCCTCCG 54
******************************************************
consensus_7948#0 CCACCTCTCCATCGCGGGCCCACGCCTGCCCCCTTGCTGCCGCCCCTTCTCCGCCGAGCC 120
consensus_7948#1 CCACCTCTCCATCGCGGGCCCACGCCTGCCCCCTTGCTGNCGCCCCTTCTCCGCCGAGCC 114
*************************************** ********************
consensus_7948#0 CCTCGTCTCCCACCCCGACGACGACGACGCCGCCGCCGGGGGCGGCGGCGGCGGCGGCGA 180
consensus_7948#1 CCTCGTNTCCCACCCCGACGACGACGAGNCNGCCGCCGGGGGGGGGNGCNGNG--NANGN 172
****** ******************** * *********** ** ** * * *
consensus_7948#0 GGGATCGGGAGGGGGACGGATCATAGAGGCTCGGGCGGGGGTGATGGGCCCGGACTCGCG 240
consensus_7948#1 GTNATCGGAAGGGGGACGGTTCATAGAGGCTCGGGCGGGGGTAATGGGCCCGGACTCGCG 232
* ***** ********** ********************** *****************
consensus_7948#0 GCGGACCGGCGTGATCGGCGTCAAGTGCGGCATGTCGGCGATGTGGGACAAGTGGGGCGC 300
consensus_7948#1 GCGGACCGGCNTGATCGGNGTCAAGTNCGGA----------------------------- 263
********** ******* ******* ***
consensus_7948#0 CAAGGTGCCCATCACCGTCCTCTGGGTCGACGACAACGTCGTCTGCCAGGTCAAGACCGC 360
consensus_7948#1 ------------------------------------------------------------
consensus_7948#0 CGAGAAGGAGGGGTTCTTCGCGCTTCAGCTTGGAGCAGGCCAAAAGAAGGAAAAACATCT 420
consensus_7948#1 ------------------------------------------------------------
consensus_7948#0 AACAAAACCTGAAGTGGGCCACTTCAGAGCACAAGGAGTCCCTCTAAAGAGAAAACTAAG 480
consensus_7948#1 ------------------------------------------------------------
consensus_7948#0 GGAGTTTCCTGTTACTGAAGATGCACTTATTCCTCTTGGAACAACAATCACAGTTCGCCA 540
consensus_7948#1 ------------------------------------------------------------
consensus_7948#0 TTTTGTGCCCGGACAATTTGTGGATGTTACTGGAATCACAAAGGGCAAAGGTTTTGCGGG 600
consensus_7948#1 ------------------------------------------------------------
consensus_7948#0 TGGTATGAAAAGACATGGTTTTAGTGGGATGCCTGCATCACATGGTGCATCTCTATCACA 660
consensus_7948#1 ------------------------------------------------------------
consensus_7948#0 TCGGAGCATCGGTTCTACTGGTCAAAGAGATGCTCCTGGAAGGGTCTTCAAAAACAGAAA 720
consensus_7948#1 ------------------------------------------------------------
consensus_7948#0 GATGCCTGGACGTATGGGTGGTGTACAGCGCACCGTGAAAAATGTATGGGTTTATCAAAT 780
consensus_7948#1 ------------------------------------------------------------
consensus_7948#0 AGACCCTGCCAGGAACTTATTGTATCTGAAAGGCCAGGTTCCTGGTCCTCAAGGCAGCTT 840
consensus_7948#1 ------------------------------------------------------------
consensus_7948#0 TGTTTTTGTTAAGGACTCAATATACAAGAAACCCGACATAGCTAAGCTGCCTTTCCCAAC 900
consensus_7948#1 ------------------------------------------------------------
consensus_7948#0 ATATTTCTCACAAGAAGGTGAGTCGGAGGAGCTCCTCGTCGCTGATCTTGGTGACATCGA 960
consensus_7948#1 ------------------------------------------------------------
consensus_7948#0 CCCATTCATGGTAGCGGATTAAGATTAGGGCCTACTTTGGAAGGGTCCTTTTGTTTTCTG 1020
consensus_7948#1 ------------------------------------------------------------
consensus_7948#0 TGCACTTCAGCTTGACCATCCGACAAAATTGTTAAATTTTGCATGGATATATGAGTAGTT 1080
consensus_7948#1 ------------------------------------------------------------
consensus_7948#0 GCTGGATTGCGAGTCATCCCATTACTGGCCCGCCTCTGATCAATGTTGTTCCATGTACAC 1140
consensus_7948#1 ------------------------------------------------------------
consensus_7948#0 TACTTGGCAAATGTGCCAGGGCCCTAACTCGATTAGGGTTTTGAGCTGATTGTTTGACAA 1200
consensus_7948#1 ------------------------------------------------------------
consensus_7948#0 AATGGAACTTTTTTGTTCAATAATTTGTGTAATCTAAGCTTCAGATAGATATATAAAATG 1260
consensus_7948#1 ------------------------------------------------------------
consensus_7948#0 GGAAAGATTCACCGCAGAGATAGAAAAAAAAAAAANAAAAAAAAAAAA 1308
consensus_7948#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||