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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7952#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2009 fasta sequence
[TAAACCCGTGCTGCTCCTCCGACGAGCGCCGCCGCCGCCGCCGCCCTCGCCATCGCCTCCGCGAGCGCGCGTCTCCCTGCTCCATGGGCCGCGGGGCCCAGACGACCAGCCGGTGCGCGCCGTAGATCCCGCGCGCCAGATCCGATGGGGGAGACCGGGGTGGCCGTCGCCTCCTCCCCGCGCGCCGCGGCCTCCTCCCCGCGCGCCGCCGCCTCCTCGGCGTCGGTCGCGTCGTCGCCGCGGGCGGGCGGGGTGGGCGGGCGGCACCACCACAGGCGGTGGGGTGGCGCGGCGGCGATCTCGCCGTCGTACAGGGCGGTGCTGCTCGCGCTGTGGCTGGTCGGGTTCGCGCTCGTGTTCCTGTGGCAGAGCACCTCGGTGGGCCGCGCGCGGCTCTACACCCGCCCGCCGCTGCTGCCGAAGCGCGCGCCGTCCGCCCAGGGGATGGGGCAGTGGGTGGCCGCGCCGCCGGTCTACGATCTGAGGGAGTTCGGGGGCGTCGGGGACGGGCGGACGCTCAACACCGAGGCGTTCGTGGCGGCGGTGGCGTCCATCGCGGAGAGAGGCGGCGGGAGGCTCGTCGTGCCCGCCGGGAGGTGGCTGACCGCGCCGTTCAACCTCACCAGTAGGATGACGCTATTCCTCGCCGCCGGCGCTGAGATCCTCGGGGTCCAGGATGAAAGATATTGGCCGTTGATGTCTCCGTTACCATCATATGGGTACGGAAGAGAGCACAGGGGGCCTAGGTATGGGAGCCTTATACATGGTCAAGACCTCAAGGATGTGACTATAACTGGACAAAATGGAACCATAAATGGGCAAGGTCAAAGTTGGTGGAGCAAATTTCGGAAGAAAGTCCTCAATCACACAAGGGGTCCTCTTGTGCAACTCATGCGGTCAAGTAACATTACCATTTCTAACATCACTCTACGGGATTCTCCCTTCTGGACACTTCATATATATGACTGCAAGGATGTTACTATATCAGATACCACCATCCTGGCTCCAATTGTTGGAGCTCCAAACACTGATGGGATAGATCCAGATTCTTGTGAGAATGTAGTGATTAAAAACTGCTATATTTCTGTTGGTGATGATGGGATTGCTATAAAGAGTGGTTGGGACCAATATGGAATTGCTTATGGGCGTCCATCTACTAACATTATTATTCACAACGTCACAATCCGCTCCATGGTCAGTGCTGGTGTATCTATAGGAAGTGAGATGTCTGGCGGTGTTTCAAATGTCTTGGTAGAGAATGTCCATATCTGGGATTCACGGCGAGGTGTGAGGATAAAGACTGCCCCTGGAAGAGGGGCCTATGTAAGCAACATCACGTACCGGAACATAACCCTAGAACACATCCGAGTTGGCATTGTGATCAAGACCGACTACAATGAGCACCCGGACGAAGGCTTCGACCCCAAGGCAGTTCCCATCATAGAGAACATCTCGTACAGTTCAATCCATGGACATGGGGTGCGTGTACCAGTCAGGATACAGGGGAGCGCAGAGATCCCCGTGAAGAATGTTACTTTCCATGATATGTCAGTCGGTTTGGTGGACAGGAAGAACCACGTTTTCCAGTGCTCCTTCGTCCAGGGGCAGGTCATTGGCTATGTTTTCCCTGTACCGTGCAAGAACCTGGATCTGTACAACGAGCGGCGTGAGCTGGTTAAACAATCAGCACTGCAGAATATCTCTGATATCGACTACAGTTTTTGACAAGGCGGCACCCTCTTTTTTTCGGTTCACTGTACCATTGCTGTAGGAGTATTCACTGCTCAGTTAACAGTTACAGAGAATTTTTTGGGTAGCTTTTTACAGCTTTCACTCTCAGAGTCTCAGGAATGTATTTAAGGATGTTCCACCTGTCTATACTGCCTCACAAAAGGACACTGATGTTTCCACTTCAGTCATGTATTTGTACACACTAAATCAGGCCCATAGCTCAATTGTACACCTTTTTAGCAACAAATTTCTCTGTTGAGAGCAATAAAGTTCTTCGT]
[+] EMBL AK121407 [TAAACCCGTGCTGCTCCTCCGACGAGCGCCGCCGCCGCCGCCGCCCTCGCCATCGCCTCCGCGAGCGCGCGTCTCCCTGCTCCATGGGCCGCGGGGCCCAGACGACCAGCCGGTGCGCGCCGTAGATCCCGCGCGCCAGATCCGATGGGGGAGACCGGGGTGGCCGTCGCCTCCTCCCCGCGCGCCGCGGCCTCCTCCCCGCGCGCCGCCGCCTCCTCGGCGTCGGTCGCGTCGTCGCCGCGGGCGGGCGGGGTGGGCGGGCGGCACCACCACAGGCGGTGGGGTGGCGCGGCGGCGATCTCGCCGTCGTACAGGGCGGTGCTGCTCGCGCTGTGGCTGGTCGGGTTCGCGCTCGTGTTCCTGTGGCAGAGCACCTCGGTGGGCCGCGCGCGGCTCTACACCCGCCCGCCGCTGCTGCCGAAGCGCGCGCCGTCCGCCCAGGGGATGGGGCAGTGGGTGGCCGCGCCGCCGGTCTACGATCTGAGGGAGTTCGGGGGCGTCGGGGACGGGCGGACGCTCAACACCGAGGCGTTCGTGGCGGCGGTGGCGTCCATCGCGGAGAGAGGCGGCGGGAGGCTCGTCGTGCCCGCCGGGAGGTGGCTGACCGCGCCGTTCAACCTCACCAGTAGGATGACGCTATTCCTCGCCGCCGGCGCTGAGATCCTCGGGGTCCAGGATGAAAGATATTGGCCGTTGATGTCTCCGTTACCATCATATGGGTACGGAAGAGAGCACAGGGGGCCTAGGTATGGGAGCCTTATACATGGTCAAGACCTCAAGGATGTGACTATAACTGGACAAAATGGAACCATAAATGGGCAAGGTCAAAGTTGGTGGAGCAAATTTCGGAAGAAAGTCCTCAATCACACAAGGGGTCCTCTTGTGCAACTCATGCGGTCAAGTAACATTACCATTTCTAACATCACTCTACGGGATTCTCCCTTCTGGACACTTCATATATATGACTGCAAGGATGTTACTATATCAGATACCACCATCCTGGCTCCAATTGTTGGAGCTCCAAACACTGATGGGATAGATCCAGATTCTTGTGAGAATGTAGTGATTAAAAACTGCTATATTTCTGTTGGTGATGATGGGATTGCTATAAAGAGTGGTTGGGACCAATATGGAATTGCTTATGGGCGTCCATCTACTAACATTATTATTCACAACGTCACAATCCGCTCCATGGTCAGTGCTGGTGTATCTATAGGAAGTGAGATGTCTGGCGGTGTTTCAAATGTCTTGGTAGAGAATGTCCATATCTGGGATTCACGGCGAGGTGTGAGGATAAAGACTGCCCCTGGAAGAGGGGCCTATGTAAGCAACATCACGTACCGGAACATAACCCTAGAACACATCCGAGTTGGCATTGTGATCAAGACCGACTACAATGAGCACCCGGACGAAGGCTTCGACCCCAAGGCAGTTCCCATCATAGAGAACATCTCGTACAGTTCAATCCATGGACATGGGGTGCGTGTACCAGTCAGGATACAGGGGAGCGCAGAGATCCCCGTGAAGAATGTTACTTTCCATGATATGTCAGTCGGTTTGGTGGACAGGAAGAACCACGTTTTCCAGTGCTCCTTCGTCCAGGGGCAGGTCATTGGCTATGTTTTCCCTGTACCGTGCAAGAACCTGGATCTGTACAACGAGCGGCGTGAGCTGGTTAAACAATCAGCACTGCAGAATATCTCTGATATCGACTACAGTTTTTGACAAGGCGGCACCCTCTTTTTTTCGGTTCACTGTACCATTGCTGTAGGAGTATTCACTGCTCAGTTAACAGTTACAGAGAATTTTTTGGGTAGCTTTTTACAGCTTTCACTCTCAGAGTCTCAGGAATGTATTTAAGGATGTTCCACCTGTCTATACTGCCTCACAAAAGGACACTGATGTTTCCACTTCAGTCATGTATTTGTACACACTAAATCAGGCCCATAGCTCAATTGTACACCTTTTTAGCAACAAATTTCTCTGTTGAGAGCAATAAAGTTCTTCGT]
[+] EMBL CB651836 [ GCGGCCGGAGGCTCGTCGTGCCCGCCGGGAGGTGGCTGACCGCGCCGTTCAACCTCACCAGTAGGATGACGCTATTCCTCGCCGCCGGCGCTGAGATCCTCGGGGTCCAGGATGAAAGATATTGGCCGTTGATGTCTCCGTTACCATCATATGGGTACGGAAGAGAGCACAGGGGGCCTAGGTATGGGAGCCTTATACATGGTCAAGACCTCAAGGATGTGACTATAACTGGACAAAATGGAACCATAAATGGGCAAGGTCAAAGTTGGTGGAGCAAATTTCGGAAGAAAGTCCTCAATCACACAAGGGGTCCTCTTGTGCAACTCATGCGGTCAAGTAACATTACCATTTCTAACATCACTCTACGGGATTCTCCCTTCTGGACACTTCATATATATGACTGCAAGGATGTTACTATATCAGATACCACCATCCTGGCTCCAATTGTTGGAGCTCCAAACACTGATGGGATAGATCCAGATTCTTGTGAGAATGTAGTGATTAAAAACTGCTATATTTCTGTTGGTGATGATGGGATTGCTATAAAGAGTGGTTGGGACCAATATGGAATTGCTTATGGGCGTCCATCTACTAACATTATTATTCACAACGTCACAATCCGCTCCATGGTCAGTGCTGGTGTATCTATAGGAAGTGAGATGTCTGGCGGTGTTTCAAATGTCTTGGTAGAGAATGTCCATATCTGGGATTCACGGCGAGGTGTGAGGATAAAGACTGCCCCTGGAAGAGGGGCCTATGTAAGCAACATCACGTACCGGAACATAACCCTAGAACACATCCGAGTTG ]
[-] EMBL CB651837 [ ATGTCTGGCGGTGTTTCAAATGTCTTGGTAGAGAATGTCCATATCTGGGATTCACGGCGAGGTGTGAGGATAAAGACTGCCCCTGGAAGAGGGGCCTATGTAAGCAACATCACGTACCGGAACATAACCCTAGAACACATCCGAGTTGGCATTGTGATCAAGACCGACTACAATGAGCACCCGGACGAAGGCTTCGACCCCAAGGCAGTTCCCATCATAGAGAACATCTCGTACAGTTCAATCCATGGACATGGGGTGCGTGTACCAGTCAGGATACAGGGGAGCGCAGAGATCCCCGTGAAGAATGTTACTTTCCATGATATGTCAGTCGGTTTGGTGGACAGGAAGAACCACGTTTTCCAGTGCTCCTTCGTCCAGGGGCAGGTCATTGGCTATGTTTTCCCTGTACCGTGCAAGAACCTGGATCTGTACAACGAGCGGCGTGAGCTGGTTAAACAATCAGCACTGCAGAATATCTCTGATATCGACTACAGTTTTTGACAAGGCGGCACCCTCTTTTTTTCGGTTCACTGTACCATTGCTGTAGGAGTATTCACTGCTCAGTTAACAGTTACAGAGAATTTTTTGGGTAGCTTTTTACAGCTTTCACTCTCAGAGTCTCAGGAATGTATTTAAGGATGTTCCACCTGTCTATACTGCCTCACAAAAGGACACTGATGTTTCCACTTCAGTCATGTATTTGTACACACTAAATCAGGCCCATAGCTCAATTGTACACCTTTTTAGCAACAAATTTCTCTGTTGAGAGCAATAAAGTTCTT ]
[+] EMBL CA882869 [ GTAGGAGTATTCACTGCTCAGTTAACAGTTACAGAGAATTTTTTGGGTAGCTTTTTACAGCTTTCACTCTCAGAGTCTCAGGAATGTATTTAAGGATGTTCCACCTGTCTATACTGCCTCACAAAAGGACACTGATGTTTCCACTTCAGTC ]
consensusID : consensus_7952#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence
[GGGCCTATGTAAGCAACATCACGTACCGGAACATAACCCTAGAACACATCCGAGTTGGCATTGTGATCAAGACCGACTACAATGAGCACCCGGANGNAGGCTTCNGNCCCAAGGGCAGTTCCATAATAGAGANCATCTCGTACAGTTCAATCCATGGACATGGGGTGCGTGTACCANTCAGGCTACAGGGGAGCGCAGAGATCCCNGTGANGNATTGTTACTTTCCATGATATNNCAGTCG]
[+] EMBL D43375 [GGGCCTATGTAAGCAACATCACGTACCGGAACATAACCCTAGAACACATCCGAGTTGGCATTGTGATCAAGACCGACTACAATGAGCACCCGGANGNAGGCTTCNGNCCCAAGGGCAGTTCCATAATAGAGANCATCTCGTACAGTTCAATCCATGGACATGGGGTGCGTGTACCANTCAGGCTACAGGGGAGCGCAGAGATCCCNGTGANGNATTGTTACTTTCCATGATATNNCAGTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7952#0 TAAACCCGTGCTGCTCCTCCGACGAGCGCCGCCGCCGCCGCCGCCCTCGCCATCGCCTCC 60
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 GCGAGCGCGCGTCTCCCTGCTCCATGGGCCGCGGGGCCCAGACGACCAGCCGGTGCGCGC 120
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 CGTAGATCCCGCGCGCCAGATCCGATGGGGGAGACCGGGGTGGCCGTCGCCTCCTCCCCG 180
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 CGCGCCGCGGCCTCCTCCCCGCGCGCCGCCGCCTCCTCGGCGTCGGTCGCGTCGTCGCCG 240
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 CGGGCGGGCGGGGTGGGCGGGCGGCACCACCACAGGCGGTGGGGTGGCGCGGCGGCGATC 300
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 TCGCCGTCGTACAGGGCGGTGCTGCTCGCGCTGTGGCTGGTCGGGTTCGCGCTCGTGTTC 360
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 CTGTGGCAGAGCACCTCGGTGGGCCGCGCGCGGCTCTACACCCGCCCGCCGCTGCTGCCG 420
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 AAGCGCGCGCCGTCCGCCCAGGGGATGGGGCAGTGGGTGGCCGCGCCGCCGGTCTACGAT 480
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 CTGAGGGAGTTCGGGGGCGTCGGGGACGGGCGGACGCTCAACACCGAGGCGTTCGTGGCG 540
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 GCGGTGGCGTCCATCGCGGAGAGAGGCGGCGGGAGGCTCGTCGTGCCCGCCGGGAGGTGG 600
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 CTGACCGCGCCGTTCAACCTCACCAGTAGGATGACGCTATTCCTCGCCGCCGGCGCTGAG 660
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 ATCCTCGGGGTCCAGGATGAAAGATATTGGCCGTTGATGTCTCCGTTACCATCATATGGG 720
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 TACGGAAGAGAGCACAGGGGGCCTAGGTATGGGAGCCTTATACATGGTCAAGACCTCAAG 780
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 GATGTGACTATAACTGGACAAAATGGAACCATAAATGGGCAAGGTCAAAGTTGGTGGAGC 840
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 AAATTTCGGAAGAAAGTCCTCAATCACACAAGGGGTCCTCTTGTGCAACTCATGCGGTCA 900
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 AGTAACATTACCATTTCTAACATCACTCTACGGGATTCTCCCTTCTGGACACTTCATATA 960
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 TATGACTGCAAGGATGTTACTATATCAGATACCACCATCCTGGCTCCAATTGTTGGAGCT 1020
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 CCAAACACTGATGGGATAGATCCAGATTCTTGTGAGAATGTAGTGATTAAAAACTGCTAT 1080
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 ATTTCTGTTGGTGATGATGGGATTGCTATAAAGAGTGGTTGGGACCAATATGGAATTGCT 1140
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 TATGGGCGTCCATCTACTAACATTATTATTCACAACGTCACAATCCGCTCCATGGTCAGT 1200
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 GCTGGTGTATCTATAGGAAGTGAGATGTCTGGCGGTGTTTCAAATGTCTTGGTAGAGAAT 1260
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 GTCCATATCTGGGATTCACGGCGAGGTGTGAGGATAAAGACTGCCCCTGGAAGAGGGGCC 1320
consensus_7952#1 -------------------------------------------------------GGGCC 5
*****
consensus_7952#0 TATGTAAGCAACATCACGTACCGGAACATAACCCTAGAACACATCCGAGTTGGCATTGTG 1380
consensus_7952#1 TATGTAAGCAACATCACGTACCGGAACATAACCCTAGAACACATCCGAGTTGGCATTGTG 65
************************************************************
consensus_7952#0 ATCAAGACCGACTACAATGAGCACCCGGACGAAGGCTTCGACCCCAAGGCAGTTCCCATC 1440
consensus_7952#1 ATCAAGACCGACTACAATGAGCACCCGGANGNAGGCTTCNGNCCCAAGGGCAGTTCCATA 125
***************************** * ******* ******* * ****
consensus_7952#0 ATAGAGAACATCTCGTACAGTTCAATCCATGGACATGGGGTGCGTGTACCAGTCAGGATA 1500
consensus_7952#1 ATAGAGANCATCTCGTACAGTTCAATCCATGGACATGGGGTGCGTGTACCANTCAGGCTA 185
******* ******************************************* ***** **
consensus_7952#0 CAGGGGAGCGCAGAGATCCCCGTGAAGAAT-GTTACTTTCCATGATATGTCAGTCGGTTT 1559
consensus_7952#1 CAGGGGAGCGCAGAGATCCCNGTGANGNATTGTTACTTTCCATGATATNNCAGTCG---- 241
******************** **** * ** ***************** ******
consensus_7952#0 GGTGGACAGGAAGAACCACGTTTTCCAGTGCTCCTTCGTCCAGGGGCAGGTCATTGGCTA 1619
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 TGTTTTCCCTGTACCGTGCAAGAACCTGGATCTGTACAACGAGCGGCGTGAGCTGGTTAA 1679
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 ACAATCAGCACTGCAGAATATCTCTGATATCGACTACAGTTTTTGACAAGGCGGCACCCT 1739
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 CTTTTTTTCGGTTCACTGTACCATTGCTGTAGGAGTATTCACTGCTCAGTTAACAGTTAC 1799
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 AGAGAATTTTTTGGGTAGCTTTTTACAGCTTTCACTCTCAGAGTCTCAGGAATGTATTTA 1859
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 AGGATGTTCCACCTGTCTATACTGCCTCACAAAAGGACACTGATGTTTCCACTTCAGTCA 1919
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 TGTATTTGTACACACTAAATCAGGCCCATAGCTCAATTGTACACCTTTTTAGCAACAAAT 1979
consensus_7952#1 ------------------------------------------------------------
consensus_7952#0 TTCTCTGTTGAGAGCAATAAAGTTCTTCGT 2009
consensus_7952#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||