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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7954#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1393 fasta sequence
[TCGGCGGCGGCGAGCAATCCCACCGCCGGTTGCCGTCTCCACCTTCCGCGGCGGCCGCGCGTCGGCTGCGAGTTTCTCTGGAATCTCTGGAATCCCTCGTCTGACCGAGGAAGAGCGGCGGGGGTGACGAGATGTCGGGGTTCGGGGACGGGTACGTCGGCACGGCTCAGGACGCCGTGAAGATCCGGCGGCTGGAGAAGCAGCGGGAGGCGGAGCGCCGCAAGATCGAGGAGCTCAAGAACAAGTCCTCCGATGGCCAGCCCGGCCTGCTCCAGTTCGGCTCCAGCACCTCCGAGATTCTTGAGACTGCGTTTAAGAAGGAAACAGTCGGTTTAGTTACAAGGGAGCAGTATGTCGAGAAGAGGGTTAATATACGGACCAAAATTGAGGAAGAAGAGAAGGAGAAGCTTCAAAAGTTGCAACAAGAGGAAGAAGAATTGCAAATGCAAAAGCGGAAAAAGAGGAGAGTGAGGGGAGATCCACGGTTATCTTTCTGTGATGAGATTGAGAATGGAAGTGATGAGGATGAATTTGAGAATCAAGAACCTCAAAAGAAACATGGTCCTGTCAAACTTGGGAAGGACCCTACTGTTGAGACAAGTTTTCTTCCTGACAGGGAGAGAGAAGCAGAGGAACAAGCAGAGCGAGAGCGTTTGAAGAAACAATGGTCGCGTGAGCAGGAACTGATTAAAAATGAACCTCTGACAATTACTTACAGTTACTGGGATGGCACTGGGCATAGGAGAGTTATCCAGGTCCGTAAAGGTGACTCCATTGGAGAATTCCTAAGGGCTGTTCAGCAGCAGCTTGCCCCTGAGTTCCGTGAAGTGCGGACAACATCAGTTGAGAATCTTCTTTATGTGAAGGAAGATCTTATTATCCCTCATCAACATAGCTTCTATGAGTTGATTATCAACAAAGCAAGGGGCAAGAGTGGACCGCTTTTCCACTTTGATGTTCATGAGGATGTGCGGACCATTGCTGATGCAACAAAAGAAAAGGACGAGTCTCATGCGGGAAAAGTCGTAGAGAGACACTGGTATGAGAAAAACAAACATATATTTCCTGCATCAAGATGGGAGATCTATGATCCTACCAAGAAGTGGGAGCGTTACACGATCCATGGAGATTAAAAATCATAATAATATACAGCAGAAATTGAGAGCCTTGAACCTGCGCATGTTTCTACTTTGGATTTCTGCAACAGTTATTACAGTAATTGTA-CGGTTGTGCCAAAGATCATTAGTGTTTGGAAAGAATTCACACTCTAACTGTATGCTTTTTACCA-TTTTGTGGAACGCCAATTCCATGTAACTGAACTAATGTTCAAATCAACTAGCTGTGAATGTTTTCATACTCGTTTTGGATATCCGTTTGCGTGGGAGTATGGGAG]
[+] EMBL CB653059 [TCGGCGGCGGCGAGCAATCCCACCGCCGGTTGCCGTCTCCACCTTCCGCGGCGGCCGCGCGTCGGCTGCGAGTTTCTCTGGAATCTCTGGAATCCCTCGTCTGACCGAGGAAGAGCGGCGGGGGTGACGAGATGTCGGGGTTCGGGGACGGGTACGTCGGCACGGCTCAGGACGCCGTGAAGATCCGGCGGCTGGAGAAGCAGCGGGAGGCGGAGCGCCGCAAGATCGAGGAGCTCAAGAACAAGTCCTCCGATGGCCAGCCCGGCCTGCTCCAGTTCGGCTCCAGCACCTCCGAGATTCTTGAGACTGCGTTTAAGAAGGAAACAGTCGGTTTAGTTACAAGGGAGCAGTATGTCGAGAAGAGGGTTAATATACGGACCAAAATTGAGGAAGAAGAGAAGGAGAAGCTTCAAAAGTTGCAACAAGAGGAAGAAGAATTGCAAATGCAAAAGCGGAAAAAGAGGAGAGTGAGGGGAGATCCACGGTTATCTTTCTGTGATGAGATTGAGAATGGAAGTGATGAGGATGAATTTGAGAATCAAGAACCTCAAAAGAAACATGGTCCTGTCAAACTTGGGAAGGACCCTACTGTTGAGACAAGTTTTCTTCCTGACAGGGAGAGAGAAGCAGAGGAACAAGCAGAGCGAGAGCGTTTGAAGAAACAATGGTCGCGTGAGCAGGAACTGATTAAAAATGAACCTCTGACAATTACTTACAGTTACTGGGATGGCACTGNGCATAGGAGAGT ]
[+] EMBL AK071211 [ ATCCCACCGCCGGTTGCCGTCTCCACCTTCCGCGGCGGCCGCGCGTCGGCTGCGAGTTTCTCTGGAATCTCTGGAATCCCTCGTCTGACCGAGGAAGAGCGGCGGGGGTGACGAGATGTCGGGGTTCGGGGACGGGTACGTCGGCACGGCTCAGGACGCCGTGAAGATCCGGCGGCTGGAGAAGCAGCGGGAGGCGGAGCGCCGCAAGATCGAGGAGCTCAAGAACAAGTCCTCCGATGGCCAGCCCGGCCTGCTCCAGTTCGGCTCCAGCACCTCCGAGATTCTTGAGACTGCGTTTAAGAAGGAAACAGTCGGTTTAGTTACAAGGGAGCAGTATGTCGAGAAGAGGGTTAATATACGGACCAAAATTGAGGAAGAAGAGAAGGAGAAGCTTCAAAAGTTGCAACAAGAGGAAGAAGAATTGCAAATGCAAAAGCGGAAAAAGAGGAGAGTGAGGGGAGATCCACGGTTATCTTTCTGTGATGAGATTGAGAATGGAAGTGATGAGGATGAATTTGAGAATCAAGAACCTCAAAAGAAACATGGTCCTGTCAAACTTGGGAAGGACCCTACTGTTGAGACAAGTTTTCTTCCTGACAGGGAGAGAGAAGCAGAGGAACAAGCAGAGCGAGAGCGTTTGAAGAAACAATGGTCGCGTGAGCAGGAACTGATTAAAAATGAACCTCTGACAATTACTTACAGTTACTGGGATGGCACTGGGCATAGGAGAGTTATCCAGGTCCGTAAAGGTGACTCCATTGGAGAATTCCTAAGGGCTGTTCAGCAGCAGCTTGCCCCTGAGTTCCGTGAAGTGCGGACAACATCAGTTGAGAATCTTCTTTATGTGAAGGAAGATCTTATTATCCCTCATCAACATAGCTTCTATGAGTTGATTATCAACAAAGCAAGGGGCAAGAGTGGACCGCTTTTCCACTTTGATGTTCATGAGGATGTGCGGACCATTGCTGATGCAACAAAAGAAAAGGACGAGTCTCATGCGGGAAAAGTCGTAGAGAGACACTGGTATGAGAAAAACAAACATATATTTCCTGCATCAAGATGGGAGATCTATGATCCTACCAAGAAGTGGGAGCGTTACACGATCCATGGAGATTAAAAATCATAATAATATACAGCAGAAATTGAGAGCCTTGAACCTGCGCATGTTTCTACTTTGGATTTCTGCAACAGTTATTACAGTAATTGTA CGGTTGTGCCAAAGATCATTAGTGTTTGGAAAGAATTCACACTCTAACTGTATGCTTTTTACCA TTTTGTGGAACGCCAATTCCATGTAACTGAACTAATGTTCAAATCAACTAGCTGTGAATGTTTTCATACTCGTTTTGGATATCCGTTTGCGTGGGAGTATGGGAG]
[+] EMBL CA763974 [ CGAGAGCGTTTGAAGAAACAATGGTCGCGTGAGCAGGTACTGATTAAAAATGAACCTCTGACAATTACTTACAGTTACTGGGATGGCACTGGGCATAGGAGAGTTATCCAGGTCCGTAAAGGTGACTCCATTGGAGAATTCCTAAGGGCTGTTCAGCAGCAGCTTGCCCCTGAGTTCCGTGAAGTGCGGACAACATCAGTTGAGAATCTTCTTTATGTGAAGGAAGATCTTATTATCCCTCATCAACATAGCTTCTATGAGTTGATTATCAACAAAGCAAGGGGCAAGAGTGGACCGCTTTTCCACTTTGATGTTCATGAGGATGTGCGGACCATTGCTGATGCAACAAAAGAAAAGGACGAGTCTCATGCGGGAAAAGTCGTAGAGAGACACTGGTATGAGAAAAACAAACATATATTTCCTGCATCAAGATGGGAGATCTATGATCCTACCAAGAAGTGGGAGCGTTACACGATCCATGGAGATTAAAAATCATAATAATATACAGCAGAAATTGAGAGCCTTGAACCTGCGCATGTTTCTACTTTGGATTTCTGCAACAGTTATTACAGTAATTGTACCGGNTGTGCCAAAGATCATTAGTGNTTGGAAAGAATTCACACTCTAACTGTATGCTTTTTACCATTTTTGTGGAACGNCAATTNCATGTAACTGAACTAACGGTCAAATCAACTAGCTGNGGATGGTTTCATAC ]
consensusID : consensus_7954#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence
[GGAGGAGAAGCTTCAAAAGTTGCAACAAGAGGAAGAAGAATTGCAAATGCAAAAGCGGAAAAAGAGGAGAGTGAGGGGAGATCCACGGTTATCTTTCTGTGATGAGATTGAGAATGGAAGTGATGAGGATGAATTTGATTTTTTTATGGTCCTCTTAACCTTTCTAGGGTCTTGTGATATCCTATTTTGTATTACCATGTTCTAACTTTTTTGTTAATGTTTGAACATCTCATGTGACGTCCCTTAAATGAATCAACTCGACAAACTAATTTAGTCAAAGCATCTAAGCAAAGATTGGGTCCTGGGCAGGGTTTCATTCAGAATGAACATTCTCTCTCTATTGTTTACGTTATGAATTGGCAGTTTAGTGCCATGGGGTTTGTGTTTGTACTGTCCTTTTTTTGTGTGTGTGTCCTGAATCTTGATTTGTTTAAGTTTGTGAAGTTACCTTACCTGTAAAGCAAGTATGGACATTATGCTTTAAATTGTTTTACAGAAGAACCTCANAAGAAACATGGTCCTGTCAAACTTGNGAAGGACCCTACTGTTGAGACAAGTTTTCTTCCTGACAGGTATTCTTTTAGTTTATGATTATCTTTCTGTGATG]
[+] EMBL CF307471 [GGAGGAGAAGCTTCAAAAGTTGCAACAAGAGGAAGAAGAATTGCAAATGCAAAAGCGGAAAAAGAGGAGAGTGAGGGGAGATCCACGGTTATCTTTCTGTGATGAGATTGAGAATGGAAGTGATGAGGATGAATTTGATTTTTTTATGGTCCTCTTAACCTTTCTAGGGTCTTGTGATATCCTATTTTGTATTACCATGTTCTAACTTTTTTGTTAATGTTTGAACATCTCATGTGACGTCCCTTAAATGAATCAACTCGACAAACTAATTTAGTCAAAGCATCTAAGCAAAGATTGGGTCCTGGGCAGGGTTTCATTCAGAATGAACATTCTCTCTCTATTGTTTACGTTATGAATTGGCAGTTTAGTGCCATGGGGTTTGTGTTTGTACTGTCCTTTTTTTGTGTGTGTGTCCTGAATCTTGATTTGTTTAAGTTTGTGAAGTTACCTTACCTGTAAAGCAAGTATGGACATTATGCTTTAAATTGTTTTACAGAAGAACCTCANAAGAAACATGGTCCTGTCAAACTTGNGAAGGACCCTACTGTTGAGACAAGTTTTCTTCCTGACAGGTATTCTTTTAGTTTATGATTATCTTTCTGTGATG]
consensusID : consensus_7954#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence
[AGAGCCTTGAACCTGCGCATGTTTCTACTTTGGATTTCTGCAACAGTTATTACAGTAATTGTACGGTTGTGCCAAAGATCATTAGTGTTTGGAAAGAATTCACACTCTAACTGTATGCTTTTTACCATTTTGTGGAACGCCAATTCCATGTAACTGAACTAATGTTCAAATCAACTAGCTGTGAATGTTTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU058068 [AGAGCCTTGAACCTGCGCATGTTTCTACTTTGGATTTCTGCAACAGTTATTACAGTAATTGTACGGTTGTGCCAAAGATCATTAGTGTTTGGAAAGAATTCACACTCTAACTGTATGCTTTTTACCATTTTGTGGAACGCCAATTCCATGTAACTGAACTAATGTTCAAATCAACTAGCTGTGAATGTTTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7954#0 TCGGCGGCGGCGAGCAATCCCACCGCCGGTTGCCGTCTCCACCTTCCGCGGCGGCCGCGC 60
consensus_7954#2 ------------------------------------------------------------
consensus_7954#1 ------------------------------------------------------------
consensus_7954#0 GTCGGCTGCGAGTTTCTCTGGAATCTCTGGAATCCCTCGTCTGACCGAGGAAGAGCGGCG 120
consensus_7954#2 ------------------------------------------------------------
consensus_7954#1 ------------------------------------------------------------
consensus_7954#0 GGGGTGACGAGATGTCGGGGTTCGGGGACGGGTACGTCGGCACGGCTCAGGACGCCGTGA 180
consensus_7954#2 ------------------------------------------------------------
consensus_7954#1 ------------------------------------------------------------
consensus_7954#0 AGATCCGGCGGCTGGAGAAGCAGCGGGAGGCGGAGCGCCGCAAGATCGAGGAGCTCAAGA 240
consensus_7954#2 ------------------------------------------------------------
consensus_7954#1 ------------------------------------------------------------
consensus_7954#0 ACAAGTCCTCCGATGGCCAGCCCGGCCTGCTCCAGTTCGGCTCCAGCACCTCCGAGATTC 300
consensus_7954#2 ------------------------------------------------------------
consensus_7954#1 ------------------------------------------------------------
consensus_7954#0 TTGAGACTGCGTTTAAGAAGGAAACAGTCGGTTTAGTTACAAGGGAGCAGTATGTCGAGA 360
consensus_7954#2 ------------------------------------------------------------
consensus_7954#1 ------------------------------------------------------------
consensus_7954#0 AGAGGGTTAATATACGGACCAAAATTGAGGAAGAAGAGAAGGAGAAGCTTCAAAAGTTGC 420
consensus_7954#2 ------------------------------------------------------------
consensus_7954#1 ------------------------------------------------------------
consensus_7954#0 AACAAGAGGAAGAAGAATTGCAAATGCAAAAGCGGAAAAAGAGGAGAGTGAGGGGAGATC 480
consensus_7954#2 ------------------------------------------------------------
consensus_7954#1 ------------------------------------------------------------
consensus_7954#0 CACGGTTATCTTTCTGTGATGAGATTGAGAATGGAAGTGATGAGGATGAATTTGAGAATC 540
consensus_7954#2 ------------------------------------------------------------
consensus_7954#1 ------------------------------------------------------------
consensus_7954#0 AAGAACCTCAAAAGAAACATGGTCCTGTCAAACTTGGGAAGGACCCTACTGTTGAGACAA 600
consensus_7954#2 ------------------------------------------------------------
consensus_7954#1 ------------------------------------------------------------
consensus_7954#0 GTTTTCTTCCTGACAGGGAGAGAGAAGCAGAGGAACAAGCAGAGCGAGAGCGTTTGAAGA 660
consensus_7954#2 ------------------------------------------------------------
consensus_7954#1 ------------------------------------------------------------
consensus_7954#0 AACAATGGTCGCGTGAGCAGGAACTGATTAAAAATGAACCTCTGACAATTACTTACAGTT 720
consensus_7954#2 ------------------------------------------------------------
consensus_7954#1 ------------------------------------------------------------
consensus_7954#0 ACTGGGATGGCACTGGGCATAGGAGAGTTATCCAGGTCCGTAAAGGTGACTCCATTGGAG 780
consensus_7954#2 ------------------------------------------------------------
consensus_7954#1 -------------------------------------------GGAGGAGAAGCTTCAAA 17
consensus_7954#0 AATTCCTAAGGGCTGTTCAGCAGCAGCTTGCCCCTGAGTTCCGTGAAGTGCGGACAACAT 840
consensus_7954#2 ------------------------------------------------------------
consensus_7954#1 AGTTGCAACAAGAGGAAGAAGAATTGCAAATGCAAAAGCGGAAAAAGAGGAGAGTGAGGG 77
consensus_7954#0 CAG-TTGAGAATCTTCTTTATGTGAAGGAAGATCTTATTATCCCTCATCAACATAGCTTC 899
consensus_7954#2 ------------------------------------------------------------
consensus_7954#1 GAGATCCACGGTTATCTTTCTGTGATGAGAT-TGAGAATGGAAGTGATGAGGATGAATTT 136
consensus_7954#0 TATGAGTTGATTATCAACAAAGCAAGGGGCAAGAGTGGACCGCTTTTCCACTTTGATGTT 959
consensus_7954#2 ------------------------------------------------------------
consensus_7954#1 GATTTTTTTATGGTCCTCTTAACCTTT--CTAGGGTCTTGTGATATCCTATTTTG----- 189
consensus_7954#0 CATGAGGATGTGCGGACCATTGCTGATGCAACAAAAGAAAAGGACGAGTCTCATGCGGGA 1019
consensus_7954#2 ------------------------------------------------------------
consensus_7954#1 TATTACCATGTTCTAACT-TTTTTGTTAATGTTTGAACATCTCATGTGACGTCCCTTAAA 248
consensus_7954#0 AAAGTCGTAGAGAGACACTGGTATGAGAAAAACAAACATATATTTCCTGCATCAAGATGG 1079
consensus_7954#2 ------------------------------------------------------------
consensus_7954#1 TGAATCAACTCGACAAACTAATTTAGTCAAAGCATCTAAGCAAAGATTGGGTCC---TGG 305
consensus_7954#0 GAGATCTATGATCCTACCAAGAAGTGGGAGCGTTACACGATCCATGGAGATTAAAAATCA 1139
consensus_7954#2 ------------------------------------------------------------
consensus_7954#1 GCAGGGTTTCATTCAGAATGAACATTCTCTCTCTATTGTTTACGTTATGAATTGGCAGTT 365
consensus_7954#0 TAATAATATACAGCAGAAATTGAGA--GCCTTGAACCTGCGCATGTTTCT--ACTTTGGA 1195
consensus_7954#2 ----------------------AGA--GCCTTGAACCTGCGCATGTTTCT--ACTTTGGA 34
consensus_7954#1 TAGTGCCATGGGGTTTGTGTTTGTACTGTCCTTTTTTTGTGTGTGTGTCCTGAATCTTGA 425
* * * * ** * *** ** * * * **
consensus_7954#0 TTTCTGCAACAGTTATTACAGTAATTGTACGGTTGTGCCAAAGAT---CATTAGTGTTTG 1252
consensus_7954#2 TTTCTGCAACAGTTATTACAGTAATTGTACGGTTGTGCCAAAGAT---CATTAGTGTTTG 91
consensus_7954#1 TTTGTTTAA--GTTTGTGAAGTTACCTTACCTGTAAAGCAAGTATGGACATTA-TGCTTT 482
*** * ** *** * *** * *** * *** ** ***** ** **
consensus_7954#0 GAAAGAATTCACACTCTAACTGTATGCTTTTTACCATTTTGTGGAACGCCAATTCCATGT 1312
consensus_7954#2 GAAAGAATTCACACTCTAACTGTATGCTTTTTACCATTTTGTGGAACGCCAATTCCATGT 151
consensus_7954#1 AAATTGTTTTACAGAAGAACCTCANAAGAAACATGGTCCTGTCAAAC-----TTGNGAAG 537
** ** *** *** * * * *** *** **
consensus_7954#0 AACTGAACTAATGTT-CAAATCAACTAGCTGTGAATGTTTTCATACTCGTTTTGGATATC 1371
consensus_7954#2 AACTGAACTAATGTT-CAAATCAACTAGCTGTGAATGTTTTCATAAAAAAAAAAAAAAAA 210
consensus_7954#1 GACCCTACTGTTGAGACAAGTTTTCTTCCTG-ACAGGTATTCTTTTAGTTTATGATTATC 596
** *** ** *** * ** *** * ** *** * *
consensus_7954#0 CGTTTGCGTGGGAGTATGGGAG 1393
consensus_7954#2 AAAAAAAAAAAAAAAAAA---- 228
consensus_7954#1 TTTCTGTGATG----------- 607
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||