cluster # 7959

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Oryza sativa
cluster # 7959 cluster # 7959 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7959#0 length = 930 sequences # 2
consensus_7959#1 length = 573 sequences # 1

consensus_7959#2 length = 367 sequences # 1
consensus_7959#3 length = 220 sequences # 1

consensusID : consensus_7959#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 930
fasta sequence

                              [GACGCAAGGGCGGCGCTGCTGCCTTCTGCACGCTGCGGCTGCGACGGCCGACGGCGACGGGCGAGGGGCGCTCGCTGCTTGGGCGCCTGGGTGGTCGGCGTGACGCCGCCGAGCCGAGGTCGCCAAGACGCCATCGCCGACACCGAGGCTGCCGGCCGCAGCGCCGCCGAGCAGCCGAGGTCGCGAACTCGCGAGGCGTCGACGGCATTTGCCGATTTGCGGCGTTGGCGGCGAGCCGGCGACGGCGCGATGGCGTTCAGGCATTGGCGGCTGGTCTGCTACTGCTACCCGTGCTGCTGCCTGCTAGCCCGTGGTAAGATTTCTAAACACGGAGTTGCTTCTTTGCATGGCATCCTTCAATCCTATCGATTCATTTGCTGCTTATAACAAGGAAAACTTGGTTAGCTTGCTCAGTTTTATCCAAAGGACTTCACAGAAACAGAGTTGTTACATCTTCCCTTTCAGCTTACTCTCTTTATCAATTTTGTTCGTAAAGATGAAAGGTTTAAAAATGTGAAAAATCTGGTTGAGCTTTCCACCATGCTTGTTGCAACAAAGAAGCACACCGCTTATGAATTTGTTTACAAGCTTCTCAAATTGGTCTTAATTCTTCCTGTGGCAACTGCTAGTGTAGAGAGGGTGTTTTCTTCCATGAATTATGTCAAGAACAAGCTAAGAAATAGAATGGGAGAACAATATTTGAATGTTGTTTAGTAACCTTTCTGGAGCGTGATCTTTTTGTGCAAGTAACAGATGATGACATCATTTCTCGCTTCCAAGCCATGGCTACCCGCAAAGTTAAATTGTAATTTGTTTCAGTTTTCATGTAATTCATTCAAACCATTTTATAATTTAGACATTTTTACCATTGTGCTACTGTTTGTACCTTTAAACATGTCATTATCAGTTTACTACTATATTGTTAAAAAA]

[+] EMBL AK111274             [GACGCAAGGGCGGCGCTGCTGCCTTCTGCACGCTGCGGCTGCGACGGCCGACGGCGACGGGCGAGGGGCGCTCGCTGCTTGGGCGCCTGGGTGGTCGGCGTGACGCCGCCGAGCCGAGGTCGCCAAGACGCCATCGCCGACACCGAGGCTGCCGGCCGCAGCGCCGCCGAGCAGCCGAGGTCGCGAACTCGCGAGGCGTCGACGGCATTTGCCGATTTGCGGCGTTGGCGGCGAGCCGGCGACGGCGCGATGGCGTTCAGGCATTGGCGGCTGGTCTGCTACTGCTACCCGTGCTGCTGCCTGCTAGCCCGTGGTAAGATTTCTAAACACGGAGTTGCTTCTTTGCATGGCATCCTTCAATCCTATCGATTCATTTGCTGCTTATAACAAGGAAAACTTGGTTAGCTTGCTCAGTTTTATCCAAAGGACTTCACAGAAACAGAGTTGTTACATCTTCCCTTTCAGCTTACTCTCTTTATCAATTTTGTTCGTAAAGATGAAAGGTTTAAAAATGTGAAAAATCTGGTTGAGCTTTCCACCATGCTTGTTGCAACAAAGAAGCACACCGCTTATGAATTTGTTTACAAGCTTCTCAAATTGGTCTTAATTCTTCCTGTGGCAACTGCTAGTGTAGAGAGGGTGTTTTCTTCCATGAATTATGTCAAGAACAAGCTAAGAAATAGAATGGGAGAACAATATTTGAATGTTGTTTAGTAACCTTTCTGGAGCGTGATCTTTTTGTGCAAGTAACAGATGATGACATCATTTCTCGCTTCCAAGCCATGGCTACCCGCAAAGTTAAATTGTAATTTGTTTCAGTTTTCATGTAATTCATTCAAACCATTTTATAATTTAGACATTTTTA                                                                 ]
[+] EMBL AU174365             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GAGGGTGTTTTCTTCCATGAATTATGTCAAGANCAAGNTAAGAAATAGAATGGGAGAACAATATTTGAATGTTGTTTAGTAACCTTTTTGGAGCGTGATCTTTTTGTGCAAGTAACAGATGATGACATCATTTNTCGCTTCCAAGCCATGGCTACCCGCAAAGTTAAATTGTAATTTGTTTCAGTTTTCATGTAATTCATTCAAACCATTTTATAATTTAGACATTTTTACCATTGTGCTACTGTTTGTACCTTTAAACATGTCATTATCAGTTTACTACTATATTGTTAAAAAA]




>consensus_7959#0
GACGCAAGGGCGGCGCTGCTGCCTTCTGCACGCTGCGGCTGCGACGGCCGACGGCGACGG
GCGAGGGGCGCTCGCTGCTTGGGCGCCTGGGTGGTCGGCGTGACGCCGCCGAGCCGAGGT
CGCCAAGACGCCATCGCCGACACCGAGGCTGCCGGCCGCAGCGCCGCCGAGCAGCCGAGG
TCGCGAACTCGCGAGGCGTCGACGGCATTTGCCGATTTGCGGCGTTGGCGGCGAGCCGGC
GACGGCGCGATGGCGTTCAGGCATTGGCGGCTGGTCTGCTACTGCTACCCGTGCTGCTGC
CTGCTAGCCCGTGGTAAGATTTCTAAACACGGAGTTGCTTCTTTGCATGGCATCCTTCAA
TCCTATCGATTCATTTGCTGCTTATAACAAGGAAAACTTGGTTAGCTTGCTCAGTTTTAT
CCAAAGGACTTCACAGAAACAGAGTTGTTACATCTTCCCTTTCAGCTTACTCTCTTTATC
AATTTTGTTCGTAAAGATGAAAGGTTTAAAAATGTGAAAAATCTGGTTGAGCTTTCCACC
ATGCTTGTTGCAACAAAGAAGCACACCGCTTATGAATTTGTTTACAAGCTTCTCAAATTG
GTCTTAATTCTTCCTGTGGCAACTGCTAGTGTAGAGAGGGTGTTTTCTTCCATGAATTAT
GTCAAGAACAAGCTAAGAAATAGAATGGGAGAACAATATTTGAATGTTGTTTAGTAACCT
TTCTGGAGCGTGATCTTTTTGTGCAAGTAACAGATGATGACATCATTTCTCGCTTCCAAG
CCATGGCTACCCGCAAAGTTAAATTGTAATTTGTTTCAGTTTTCATGTAATTCATTCAAA
CCATTTTATAATTTAGACATTTTTACCATTGTGCTACTGTTTGTACCTTTAAACATGTCA
TTATCAGTTTACTACTATATTGTTAAAAAA

consensusID : consensus_7959#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 573
fasta sequence

                              [GGCGGCGCTGCTGCCTTCTGCACGCTGCGGCTGCGACGGCCGACGGCGACGGGCGAGGGGCGCTCGCTGCTTGGGCGCCTGGGTGGTCGGCGTGACGCCGCCGAGCCGAGGTCGCCAAGACGCCATCGCCGACACCGAGGCTGCCGGCCGCAGCGCCGCCGAGCAGCCGAGGTCGCGAACTCGCGAGGCGTCGACGGCATTTGCCGATTTGCGGCGTTGGCGGCGAGCCGGCGACGGCGCGATGGCGTTCAGGCATTGGCGGCTGGTCTGCTACTGCTACCCGTGCTGCTGCCTGCTAGCCCGTGGCTCAAGATTGGGTACTTCTAAGTTGTCGAGTTTGGGGGAGACTCCACCACGCTTTCGTACCTCTGAGATATATGGAACATTATTTTGATATGGGATAAAAGTAATTCCTTGCTCATGTATTACTGTGGTTTGTACTGATTGTTGAAGGAACCTTAGGCCAATTATTATGTCATCATTAATCATTGACAAATCTCTTATTGTAATCTCATCTATTATATATTTAGTTGCATTAATGTAAACCTCCATATTATAAGCTAACTGATTATG]

[+] EMBL AK062971             [GGCGGCGCTGCTGCCTTCTGCACGCTGCGGCTGCGACGGCCGACGGCGACGGGCGAGGGGCGCTCGCTGCTTGGGCGCCTGGGTGGTCGGCGTGACGCCGCCGAGCCGAGGTCGCCAAGACGCCATCGCCGACACCGAGGCTGCCGGCCGCAGCGCCGCCGAGCAGCCGAGGTCGCGAACTCGCGAGGCGTCGACGGCATTTGCCGATTTGCGGCGTTGGCGGCGAGCCGGCGACGGCGCGATGGCGTTCAGGCATTGGCGGCTGGTCTGCTACTGCTACCCGTGCTGCTGCCTGCTAGCCCGTGGCTCAAGATTGGGTACTTCTAAGTTGTCGAGTTTGGGGGAGACTCCACCACGCTTTCGTACCTCTGAGATATATGGAACATTATTTTGATATGGGATAAAAGTAATTCCTTGCTCATGTATTACTGTGGTTTGTACTGATTGTTGAAGGAACCTTAGGCCAATTATTATGTCATCATTAATCATTGACAAATCTCTTATTGTAATCTCATCTATTATATATTTAGTTGCATTAATGTAAACCTCCATATTATAAGCTAACTGATTATG]




>consensus_7959#1
GGCGGCGCTGCTGCCTTCTGCACGCTGCGGCTGCGACGGCCGACGGCGACGGGCGAGGGG
CGCTCGCTGCTTGGGCGCCTGGGTGGTCGGCGTGACGCCGCCGAGCCGAGGTCGCCAAGA
CGCCATCGCCGACACCGAGGCTGCCGGCCGCAGCGCCGCCGAGCAGCCGAGGTCGCGAAC
TCGCGAGGCGTCGACGGCATTTGCCGATTTGCGGCGTTGGCGGCGAGCCGGCGACGGCGC
GATGGCGTTCAGGCATTGGCGGCTGGTCTGCTACTGCTACCCGTGCTGCTGCCTGCTAGC
CCGTGGCTCAAGATTGGGTACTTCTAAGTTGTCGAGTTTGGGGGAGACTCCACCACGCTT
TCGTACCTCTGAGATATATGGAACATTATTTTGATATGGGATAAAAGTAATTCCTTGCTC
ATGTATTACTGTGGTTTGTACTGATTGTTGAAGGAACCTTAGGCCAATTATTATGTCATC
ATTAATCATTGACAAATCTCTTATTGTAATCTCATCTATTATATATTTAGTTGCATTAAT
GTAAACCTCCATATTATAAGCTAACTGATTATG

consensusID : consensus_7959#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence

                              [GTCAGCCAGAGGACCAGACGCAAGGGCGGCGCTGCTGCCTTCTGCACGCTGCGGCTGCNACGGCCGACGNGACGGGCGAGGGGCGCTCGCTGCTTGGGCGCCTGGGTGGTCGGCGTGACGNCCGAGCCGAGGTCGCCAAGACGCCATCGCCGACACCNAGGCTGCCGGCCGCAGGNCGCCGAGCAGCCGAGGTCGCNAACTCGNAGGNGTCGACGGCATTTCCGATTTGCGGCGTTGGCGGCGAGCGGCGACGGCGATGGCGTTCAGGCATTTGCGGCTGGTCTGCTACTTCTANCCGTGCTTCTNCCTTCTAGCCCGTGGTAAGATTTNTAAAAACGGGTTGCTTCTTTGAATGGAATCCTTAAAT]

[+] EMBL C27254               [GTCAGCCAGAGGACCAGACGCAAGGGCGGCGCTGCTGCCTTCTGCACGCTGCGGCTGCNACGGCCGACGNGACGGGCGAGGGGCGCTCGCTGCTTGGGCGCCTGGGTGGTCGGCGTGACGNCCGAGCCGAGGTCGCCAAGACGCCATCGCCGACACCNAGGCTGCCGGCCGCAGGNCGCCGAGCAGCCGAGGTCGCNAACTCGNAGGNGTCGACGGCATTTCCGATTTGCGGCGTTGGCGGCGAGCGGCGACGGCGATGGCGTTCAGGCATTTGCGGCTGGTCTGCTACTTCTANCCGTGCTTCTNCCTTCTAGCCCGTGGTAAGATTTNTAAAAACGGGTTGCTTCTTTGAATGGAATCCTTAAAT]




>consensus_7959#2
GTCAGCCAGAGGACCAGACGCAAGGGCGGCGCTGCTGCCTTCTGCACGCTGCGGCTGCNA
CGGCCGACGNGACGGGCGAGGGGCGCTCGCTGCTTGGGCGCCTGGGTGGTCGGCGTGACG
NCCGAGCCGAGGTCGCCAAGACGCCATCGCCGACACCNAGGCTGCCGGCCGCAGGNCGCC
GAGCAGCCGAGGTCGCNAACTCGNAGGNGTCGACGGCATTTCCGATTTGCGGCGTTGGCG
GCGAGCGGCGACGGCGATGGCGTTCAGGCATTTGCGGCTGGTCTGCTACTTCTANCCGTG
CTTCTNCCTTCTAGCCCGTGGTAAGATTTNTAAAAACGGGTTGCTTCTTTGAATGGAATC
CTTAAAT

consensusID : consensus_7959#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence

                              [NCGGCGCTGCTGCNTTCTGCACGCTGCGGCTGCNACGGCCGACGGCGACGGGCGAGGGGCGCTCGCTGCTTGGNCGCCTGGTTGGTCGGCGTGACGATCCGAGCCGAGGTCGCCAAGACGCCATCNCNGACACCNAGGCTGCCGGCCGCAGCNCCGCCGAGCAGCCGAGGTCGCNAACTCGCNAGGAGTCGACGGCATTTCCCGATTTCCGGCGTTNGCG]

[+] EMBL OS1321692            [NCGGCGCTGCTGCNTTCTGCACGCTGCGGCTGCNACGGCCGACGGCGACGGGCGAGGGGCGCTCGCTGCTTGGNCGCCTGGTTGGTCGGCGTGACGATCCGAGCCGAGGTCGCCAAGACGCCATCNCNGACACCNAGGCTGCCGGCCGCAGCNCCGCCGAGCAGCCGAGGTCGCNAACTCGCNAGGAGTCGACGGCATTTCCCGATTTCCGGCGTTNGCG]




>consensus_7959#3
NCGGCGCTGCTGCNTTCTGCACGCTGCGGCTGCNACGGCCGACGGCGACGGGCGAGGGGC
GCTCGCTGCTTGGNCGCCTGGTTGGTCGGCGTGACGATCCGAGCCGAGGTCGCCAAGACG
CCATCNCNGACACCNAGGCTGCCGGCCGCAGCNCCGCCGAGCAGCCGAGGTCGCNAACTC
GCNAGGAGTCGACGGCATTTCCCGATTTCCGGCGTTNGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7959#1      ------------------------GGCGGCGCTGCTGCCTTCTGCACGCTGCGGCTGCGA 36
consensus_7959#3      -------------------------NCGGCGCTGCTGCNTTCTGCACGCTGCGGCTGCNA 35
consensus_7959#0      ----------------GACGCAAGGGCGGCGCTGCTGCCTTCTGCACGCTGCGGCTGCGA 44
consensus_7959#2      GTCAGCCAGAGGACCAGACGCAAGGGCGGCGCTGCTGCCTTCTGCACGCTGCGGCTGCNA 60
                                                ************ ******************* *

consensus_7959#1      CGGCCGACGGCGACGGGCGAGGGGCGCTCGCTGCTTGGGCGCCTGGGTGGTCGGCGTGAC 96
consensus_7959#3      CGGCCGACGGCGACGGGCGAGGGGCGCTCGCTGCTTGGNCGCCTGGTTGGTCGGCGTGAC 95
consensus_7959#0      CGGCCGACGGCGACGGGCGAGGGGCGCTCGCTGCTTGGGCGCCTGGGTGGTCGGCGTGAC 104
consensus_7959#2      CGGCCGACGN-GACGGGCGAGGGGCGCTCGCTGCTTGGGCGCCTGGGTGGTCGGCGTGAC 119
                      *********  *************************** ******* *************

consensus_7959#1      GCCGCCGAGCCGAGGTCGCCAAGACGCCATCGCCGACACCGAGGCTGCCGGCCGCAGCGC 156
consensus_7959#3      GAT-CCGAGCCGAGGTCGCCAAGACGCCATCNCNGACACCNAGGCTGCCGGCCGCAGCNC 154
consensus_7959#0      GCCGCCGAGCCGAGGTCGCCAAGACGCCATCGCCGACACCGAGGCTGCCGGCCGCAGCGC 164
consensus_7959#2      GN--CCGAGCCGAGGTCGCCAAGACGCCATCGCCGACACCNAGGCTGCCGGCCGCAG-GN 176
                      *   *************************** * ****** ****************   

consensus_7959#1      CGCCGAGCAGCCGAGGTCGCGAACTCGCGAGGCGTCGACGGCATTTGCCGATTTGCGGCG 216
consensus_7959#3      CGCCGAGCAGCCGAGGTCGCNAACTCGCNAGGAGTCGACGGCATTTCCCGATTTCCGGCG 214
consensus_7959#0      CGCCGAGCAGCCGAGGTCGCGAACTCGCGAGGCGTCGACGGCATTTGCCGATTTGCGGCG 224
consensus_7959#2      CGCCGAGCAGCCGAGGTCGCNAACTCGN-AGGNGTCGACGGCATTT-CCGATTTGCGGCG 234
                      ******************** ******  *** ************* ******* *****

consensus_7959#1      TTGGCGGCGAGCCGGCGACGGCGCGATGGCGTTCAGGCATTGGCGGCTGGTCTGCTACTG 276
consensus_7959#3      TTNGCG------------------------------------------------------ 220
consensus_7959#0      TTGGCGGCGAGCCGGCGACGGCGCGATGGCGTTCAGGCATTGGCGGCTGGTCTGCTACTG 284
consensus_7959#2      TTGGCGGCGAGC-GGCGACGGCG--ATGGCGTTCAGGCATTTGCGGCTGGTCTGCTACTT 291
                      ** ***                                                      

consensus_7959#1      CTACCCGTGCTGCTGCCTGCTAGCCCGTGGCTCAAGATTGGGTACTTCTAAGTTGTCGAG 336
consensus_7959#3      ------------------------------------------------------------
consensus_7959#0      CTACCCGTGCTGCTGCCTGCTAGCCCGTGGT--AAGATTTCTAAACACGGAGTTG-CTTC 341
consensus_7959#2      CTANCCGTGCTTCTNCCTTCTAGCCCGTGGT--AAGATTTNTAAAAACGG-GTTG-CTTC 347
                                                                                  

consensus_7959#1      TTTGGGGGAGACTCCACCACGCTTTCG-TACCTCTGAGATATAT-----GGAACA----- 385
consensus_7959#3      ------------------------------------------------------------
consensus_7959#0      TTTGCATGGCATCCTTCAATCCTATCGATTCATTTGCTGCTTATAACAAGGAAAACTTGG 401
consensus_7959#2      TTTGAATGGAATCCTTAAAT---------------------------------------- 367
                                                                                  

consensus_7959#1      TTATTTTGATATGGGATAAAAGTAATTCCTTGCTCATGTATTACTGTGGTTTGTACTGAT 445
consensus_7959#3      ------------------------------------------------------------
consensus_7959#0      TTAGCTTGCTCAGTTTTATCCAAAGGACTTCACAGAAACAGAGTTGTTACATCTTCCCTT 461
consensus_7959#2      ------------------------------------------------------------
                                                                                  

consensus_7959#1      TGTTGAAGGAACCTTAGGCCAATTATTATGTCATCATTAATCATTGACAAATCTCTTATT 505
consensus_7959#3      ------------------------------------------------------------
consensus_7959#0      TCAGCTTACTCTCTTTATCAATTTTGTTCGTAAAGATGAAAGGTTTAAAAATGTGAAAAA 521
consensus_7959#2      ------------------------------------------------------------
                                                                                  

consensus_7959#1      GTAATCTCATCTATTATATAT-TTAGTTGCATTAATGTAAACCTCCATATTATAAGCTAA 564
consensus_7959#3      ------------------------------------------------------------
consensus_7959#0      TCTGGTTGAGCTTTCCACCATGCTTGTTGCAACAAAGAAGCACACCGC-TTATGAATTTG 580
consensus_7959#2      ------------------------------------------------------------
                                                                                  

consensus_7959#1      CTGATTATG--------------------------------------------------- 573
consensus_7959#3      ------------------------------------------------------------
consensus_7959#0      TTTACAAGCTTCTCAAATTGGTCTTAATTCTTCCTGTGGCAACTGCTAGTGTAGAGAGGG 640
consensus_7959#2      ------------------------------------------------------------
                                                                                  

consensus_7959#1      ------------------------------------------------------------
consensus_7959#3      ------------------------------------------------------------
consensus_7959#0      TGTTTTCTTCCATGAATTATGTCAAGAACAAGCTAAGAAATAGAATGGGAGAACAATATT 700
consensus_7959#2      ------------------------------------------------------------
                                                                                  

consensus_7959#1      ------------------------------------------------------------
consensus_7959#3      ------------------------------------------------------------
consensus_7959#0      TGAATGTTGTTTAGTAACCTTTCTGGAGCGTGATCTTTTTGTGCAAGTAACAGATGATGA 760
consensus_7959#2      ------------------------------------------------------------
                                                                                  

consensus_7959#1      ------------------------------------------------------------
consensus_7959#3      ------------------------------------------------------------
consensus_7959#0      CATCATTTCTCGCTTCCAAGCCATGGCTACCCGCAAAGTTAAATTGTAATTTGTTTCAGT 820
consensus_7959#2      ------------------------------------------------------------
                                                                                  

consensus_7959#1      ------------------------------------------------------------
consensus_7959#3      ------------------------------------------------------------
consensus_7959#0      TTTCATGTAATTCATTCAAACCATTTTATAATTTAGACATTTTTACCATTGTGCTACTGT 880
consensus_7959#2      ------------------------------------------------------------
                                                                                  

consensus_7959#1      --------------------------------------------------
consensus_7959#3      --------------------------------------------------
consensus_7959#0      TTGTACCTTTAAACATGTCATTATCAGTTTACTACTATATTGTTAAAAAA 930
consensus_7959#2      --------------------------------------------------