cluster # 7962

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Oryza sativa
cluster # 7962 cluster # 7962 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7962#0 length = 441 sequences # 3

consensus_7962#1 length = 344 sequences # 1
consensus_7962#2 length = 172 sequences # 1

consensusID : consensus_7962#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 441
fasta sequence

                              [TGAAAAAGAATGCACTGCTGTGTTAGACTTCCTT-T-TCTTTTGTAGATCACAAACATCACCATTTTATAGTGTTTGTTTGGTCAAACACAAGTGCAGAACTGCAAGTTCAATGCCGCGCACATCCCATTTACAGTGTCCAGCTTGCTAATTTTTCATGGTGCAAAAAGTCTTATTAATACCTGAGTAAAATTCGATAACTTGCCGCAATCTGCAGTTTTTTTTCTACCAAATACAAATGCTAGGACGGTAGGCAAGCCTACAAGGTAATGTTATTATTTTGCTGTATTATGTGGTGTTGGTTTATATCCCATAAATATGGGAAAACACATTCTTTGTTGTACACTCAACGCTTACAAGTTGATGAGAAGGGCATGGATTGATAGACTGGCAAGCCACGCCACAGAAACACCCTGCAGATCTTGCAAGGTTACATTAGTTCTG]

[-] EMBL AU063429             [TGAAAAAGAATGCACTGCTGTGTTAGACTTCCTT T TCTTTTGTAGATCACAAACATCACCATTTTATAGTGTTTGTTTGGTCAAACACAAGTGCAGAACTGCAAGTTCAATGCCGCGCACATCCCATTTACAGTGTCCAGCTTGCTAATTTTTCATGGTGCAAAAAGTCTTATTAATACCTGAGTAAAATTCGATAACTTGCCGCAATCTGCAGTTTTTTTTCTACCAAATACAAATGCTAGGACGGTAGGCAAGCCTACAAGGTAATGTTATT                                                                                                                                                                       ]
[+] EMBL CB660060             [  AAAAAGAATGCACTGCTGTGTTAGACTTCCTTCTCTCTTTTGTAGATCACAAACATCACCATTTTATAGTGTTTGTTTGGTCAAACACAAGTGCAGAACTGCAAGTTCAATGCCGCGCACATCCCATTTACAGTGTCCAGCTTGCTAATTTTTCATGGTGCAAAAAGTCTTATTAATACCTGAGTAAAATTCGATAACTTGCCGCAATCTGCAGTTTTTTTTCTACCAAATACAAATGCTAGGACGGTAGGCAAGCCTACAAGGTAATGTTATTATTTTGCTGTATTATGTGGTGTTGGTTTATATCCCATAAATATGGGAAAACACATTCTTTGTTGTACACTCAACGCTTACAAGTTGATGAGAAGGGCATGGATTGATAGACTGGCAAGCCACGCCACAGAAACACCCTGCAGATCTTGCAAGGTTACATTAGTTCTG]
[-] EMBL AU063586             [  AAAAAGAATGCACTGCTGTGTTAGACTTCCTT T TCTTTTGTAGATNACAAACATCACCATTTTATAGTGTTTGTTTGGTCAAANACAAGTGCAGAACTGCAAGTTCAATGCCGCGCACATCCCATTTACAGTGTCCAGCTTGCTAATTTTTCATGGTGCAAAAAGTCTTATTAATACCTGAGTTAAANTCGATAACTTGCCGCAATCTGCAGTTTTTTTTCTACCAAATACAAATGCTAGGACGGTAGGCAAGCCTACAAGGTAATGTTATT                                                                                                                                                                       ]




>consensus_7962#0
TGAAAAAGAATGCACTGCTGTGTTAGACTTCCTTTTCTTTTGTAGATCACAAACATCACC
ATTTTATAGTGTTTGTTTGGTCAAACACAAGTGCAGAACTGCAAGTTCAATGCCGCGCAC
ATCCCATTTACAGTGTCCAGCTTGCTAATTTTTCATGGTGCAAAAAGTCTTATTAATACC
TGAGTAAAATTCGATAACTTGCCGCAATCTGCAGTTTTTTTTCTACCAAATACAAATGCT
AGGACGGTAGGCAAGCCTACAAGGTAATGTTATTATTTTGCTGTATTATGTGGTGTTGGT
TTATATCCCATAAATATGGGAAAACACATTCTTTGTTGTACACTCAACGCTTACAAGTTG
ATGAGAAGGGCATGGATTGATAGACTGGCAAGCCACGCCACAGAAACACCCTGCAGATCT
TGCAAGGTTACATTAGTTCTG

consensusID : consensus_7962#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence

                              [ATTAATACCTGAGTAAAATTCGATAACTCTGCCGCAATCTGCAGTTTTTTTCTACAAAATACAAATGCTAGGACGGTAGGCAAGCCTACAAGGGAATGTTATTATTTTGCTGTATTATGTGGTGTTGGTTTATATCCCATAAATATGGGAAAACACATTCTTTGTTGTACACACAACGCTTACAAGTTGATGAAAAGGGCATGGATTGATAAACTGGCAAGCCACGCCACAAAAACACCCTGATGGCTCCAAAGAGTTAGCTTAAAGAAGCAGGAAAATAAAGGTCAAGTTGTATATGGGGAACTAAACGTACCTGCAGATCTTGCAAGGCTACATTAGTTCTG]

[+] EMBL CB619216             [ATTAATACCTGAGTAAAATTCGATAACTCTGCCGCAATCTGCAGTTTTTTTCTACAAAATACAAATGCTAGGACGGTAGGCAAGCCTACAAGGGAATGTTATTATTTTGCTGTATTATGTGGTGTTGGTTTATATCCCATAAATATGGGAAAACACATTCTTTGTTGTACACACAACGCTTACAAGTTGATGAAAAGGGCATGGATTGATAAACTGGCAAGCCACGCCACAAAAACACCCTGATGGCTCCAAAGAGTTAGCTTAAAGAAGCAGGAAAATAAAGGTCAAGTTGTATATGGGGAACTAAACGTACCTGCAGATCTTGCAAGGCTACATTAGTTCTG]




>consensus_7962#1
ATTAATACCTGAGTAAAATTCGATAACTCTGCCGCAATCTGCAGTTTTTTTCTACAAAAT
ACAAATGCTAGGACGGTAGGCAAGCCTACAAGGGAATGTTATTATTTTGCTGTATTATGT
GGTGTTGGTTTATATCCCATAAATATGGGAAAACACATTCTTTGTTGTACACACAACGCT
TACAAGTTGATGAAAAGGGCATGGATTGATAAACTGGCAAGCCACGCCACAAAAACACCC
TGATGGCTCCAAAGAGTTAGCTTAAAGAAGCAGGAAAATAAAGGTCAAGTTGTATATGGG
GAACTAAACGTACCTGCAGATCTTGCAAGGCTACATTAGTTCTG

consensusID : consensus_7962#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 172
fasta sequence

                              [TTTTTTAAATTGTTATTATTTTGCTTGTATTATGTGGTGTTGGTTTATATCCCATAAATATGGGAAAAACATTCTTTGTTTGTACACTCAAGCTTACAAGTTGATGAAAGGGATGGATTGATATGACTTGGCAATGCCACTGCCACAGAAAACACCCTGATGGCTCCAAAGA]

[-] EMBL BI813497             [TTTTTTAAATTGTTATTATTTTGCTTGTATTATGTGGTGTTGGTTTATATCCCATAAATATGGGAAAAACATTCTTTGTTTGTACACTCAAGCTTACAAGTTGATGAAAGGGATGGATTGATATGACTTGGCAATGCCACTGCCACAGAAAACACCCTGATGGCTCCAAAGA]




>consensus_7962#2
TTTTTTAAATTGTTATTATTTTGCTTGTATTATGTGGTGTTGGTTTATATCCCATAAATA
TGGGAAAAACATTCTTTGTTTGTACACTCAAGCTTACAAGTTGATGAAAGGGATGGATTG
ATATGACTTGGCAATGCCACTGCCACAGAAAACACCCTGATGGCTCCAAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7962#1      ------------------------------------------------------------
consensus_7962#2      ------------------------------------------------------------
consensus_7962#0      TGAAAAAGAATGCACTGCTGTGTTAGACTTCCTTTTCTTTTGTAGATCACAAACATCACC 60
                                                                                  

consensus_7962#1      ------------------------------------------------------------
consensus_7962#2      ------------------------------------------------------------
consensus_7962#0      ATTTTATAGTGTTTGTTTGGTCAAACACAAGTGCAGAACTGCAAGTTCAATGCCGCGCAC 120
                                                                                  

consensus_7962#1      ---------------------------------------------------ATTAATACC 9
consensus_7962#2      ------------------------------------------------------------
consensus_7962#0      ATCCCATTTACAGTGTCCAGCTTGCTAATTTTTCATGGTGCAAAAAGTCTTATTAATACC 180
                                                                                  

consensus_7962#1      TGAGTAAAATTCGATAACTCTGCCGCAATCTGCAGTTTTTTT-CTACAAAATACAAATGC 68
consensus_7962#2      ------------------------------------------------------------
consensus_7962#0      TGAGTAAAATTCGATAACT-TGCCGCAATCTGCAGTTTTTTTTCTACCAAATACAAATGC 239
                                                                                  

consensus_7962#1      TAGGACGGTAGGCAAGCCTACAAGGGAATGTTATTATTTTGCT-GTATTATGTGGTGTTG 127
consensus_7962#2      ------------------TTTTTTAAATTGTTATTATTTTGCTTGTATTATGTGGTGTTG 42
consensus_7962#0      TAGGACGGTAGGCAAGCCTACAAGGTAATGTTATTATTTTGCT-GTATTATGTGGTGTTG 298
                                        *       * *************** ****************

consensus_7962#1      GTTTATATCCCATAAATATGGGAAAACACATTCTTTGTT-GTACACACAACGCTTACAAG 186
consensus_7962#2      GTTTATATCCCATAAATATGGGAAAA-ACATTCTTTGTTTGTACACTCAA-GCTTACAAG 100
consensus_7962#0      GTTTATATCCCATAAATATGGGAAAACACATTCTTTGTT-GTACACTCAACGCTTACAAG 357
                      ************************** ************ ****** *** *********

consensus_7962#1      TTGATGAAAAGGGCATGGATTGATA--AACTGGCAA-GCCAC-GCCACA-AAAACACCCT 241
consensus_7962#2      TTGATGAAAGGG--ATGGATTGATATGACTTGGCAATGCCACTGCCACAGAAAACACCCT 158
consensus_7962#0      TTGATGAGAAGGGCATGGATTGATA--GACTGGCAA-GCCAC-GCCACA-GAAACACCCT 412
                      ******* * **  ***********     ****** ***** ******  *********

consensus_7962#1      GATGGCTCCAAAGAGTTAGCTTAAAGAAGCAGGAAAATAAAGGTCAAGTTGTATATGGGG 301
consensus_7962#2      GATGGCTCCAAAGA---------------------------------------------- 172
consensus_7962#0      GCAGATCTTGCAAGGTTACATTAGTTCTG------------------------------- 441
                      *  *       *                                                

consensus_7962#1      AACTAAACGTACCTGCAGATCTTGCAAGGCTACATTAGTTCTG 344
consensus_7962#2      -------------------------------------------
consensus_7962#0      -------------------------------------------