|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7966#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 989 fasta sequence
[AGGCAGACAACACAAAAGAACAAGAAAGAGGAGTGGGTTGGCTAAAGGGTGAAGAAACCAAATAAGAAAAAGATAAAAAGGGGAAAAGGTCGCCCAGCGGCTGAAACCGNCCTGCATTGCTCCTCGCTGCTTTGGATTCGCACTTCGCAGCTTGAGACCGGGAGCAGGACGAGCGGCGGAATGGGTTCCGGNTCCGGNTCTTTCCTCAAGGTGGTGGTAAAGAACTTGGATGTTCTTGCGGGGCCTATAGTTTCACTTGCTTATCCACTATATGCATCTNTTTCGAGCGATAGAAACAAAATCTGCTGTAGATGATCAGCAATGGCTCACATACTGGGTGTTGTACTCGTTTTATCACTCTATTTTNAGCTCACTTTTTTCTNCGGTACTTGATTGGCTTCCTTTNATGGTCTTATGCTAAATTGTTTTTCAATTG-CTGGTTGGTCTTGCCCTACTTCAATGGTGCTGCACATGTCTATGAACACTTTGTGAGGCCA-ATGGTTGTCAACCA-GC-AAATAGTTAATATCTGGTACATCCCAAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCAGCTGCGCAGAGATACA-TTGAACAAAATGGATCAAGAGCGTTTGAAAGTCTGGTTAACAAGTTTAAGGCTTCAAACA-CAAGGCGCTCCATTCTGGAGGAGGTAGAGGCTGAAAGAAGAGCCAAGGCTGAACTAGAAGCAGAAGCAAGGGATGAGAATCCCTTCTTCAATCAAAATTATCGGTACTAGAAGTCAGGGTTCATAGGATCAAATTTATGCTCATGGGGTAT-GTGTTCAAACGATCATGGATTAGTGTAAATAGGTTCTAGGATTCGAGTATTCTTGCTACTCTTGTTGATGCA-GGGTTCTTGCCATGAAGTAATAAATA-CTAGTGAACTAGATTTGGCTTCTATCATATGAAAATGCTAGAATGAACAACAGCATCTGC-AGACAACTGATTTGGGAAAAAAAAAA]
[+] EMBL C27438 [AGGCAGACAACACAAAAGAACAAGAAAGAGGAGTGGGTTGGCTAAAGGGTGAAGAAACCAAATAAGAAAAAGATAAAAAGGGGAAAAGGTCGCCCAGCGGCTGAAACCGNCCTGCATTGCTCCTCGCTGCTTTGGATTCGCACTTCGCAGCTTGAGACCGGGAGCAGGACGAGCGGCGGAATGGGTTCCGGNTCCGGNTCTTTCCTCAAGGTGGTGGTAAAGAACTTGGATGTTCTTGCGGGGCCTATAGTTTCACTTGCTTATCCACTATATGCATCTNTTTCGAGCGATAGAAACAAAATCTGCTGTAGATGATCAGCAATGGCTCACATACTGGGTGTTGTACTCGTTTTATCACTCTATTTTNAGCTCACTTTTTTCTNCGGTACTTGATTGGCTTCCTTTNATGGTCTTATGCTAAATTGT ]
[+] EMBL AK108482 [ AAGAAACCAAATAAGAAAAAGATAAAAAGGGGAAAAGGTCGCCCAGCGGCTGAAACCGACCTGCATTGCTCCTCGCTGCTTTGGATTCGCACTTCGCAGCTTGAGACCGGGAGCAGGACGAGCGGCGGAATGGGTTCCGGATCCGGATCTTTCCTCAAGGTGGTGGTAAAGAACTTGGATGTTCTTGCGGGGCCTATAGTTTCACTTGCTTATCCACTATATGCATCT GTTCGAGCGATAGAAACAAAATCTGCTGTAGATGATCAGCAATGGCTCACATACTGGGTGTTGTACTCG TTTATCACTCTA TTTGAGCTCAC TTTTTCTCCGGTACTTGAATGGCTTCCTTT ATGGTCTTATGCTAAATTGTTTTTCAATTG CTGGTTGGTCTTGCCCTACTTCAATGGTGCTGCACATGTCTATGAACACTTTGTGAGGCCA ATGGTTGTCAACCA GC AAATAGTTAATATCTGGTACATCCCAAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCAGCTGCGCAGAGATACA TTGAACAAAATGGATCAAGAGCGTTTGAAAGTCTGGTTAACAAGTTTAAGGCTTCAAACA CAAGGCGCTCCATTCTGGAGGAGGTAGAGGCTGAAAGAAGAGCCAAGGCTGAACTAGAAGCAGAAGCAAGGGATGAGAATCCCTTCTTCAATCAAAATTATCGGTACTAGAAGTCAGGGTTCATAGGATCAAATTTATGCTCATGGGGTAT GTGTTCAAACGATCATGGATTAGTGTAAATAGGTTCTAGGATTCGAGTATTCTTGCTACTCTTGTTGATGCA GGGTTCTTGCCATGAAGTAATAAATA CTAGTGAACTAGATTTGGCTTCTATCATATGAAAATGCTAGAATGAACAACAGCATCTGC AGACAA ]
[+] EMBL BI801870 [ cTATGCTAAATTGTTTTTCAATTGCCTTGTTTGTC TGCCCTACTTCAATGGT CTGCACATGTCTATGAACACTTTGTGA GCCACATGGTTGTCAACCACGCAAAATAGTTAATATCTGGTACATCCCAAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCA CTGCGCAGAGATACACTTGAAC AAATGGATCAAAAGCGTTTGAAAGTCTGGTTAACAAGTTTAAGGCTTCAAACACCAAGGCGCTCCATTCTGGAGGAGGTAGAGGCTGAAAGAAGAGCCAAGGCTGAACTAGAAGCAGAAGCAAGGGATGAGAATCCTTTCTTCAATCAAAATTATCGGTACTAGAAGTCAGGGTTCATAGGATCAAATTTATGCTCATGGGGTATCGTGTTCAAACGATCATGGATTAGTGTAAATAGGTTCAAGGATTCGAGTATTCTTGCTACTCTTGTTGATGCACGGGTTCTTGCCATGAAGTAATAAATACCTAGTGAACTAGATTTGGCTTCTATCATATGAAAATGCTAGAATGAACCACAGCATCTGCAAGACAACTGATTTGGGAAAAAAAAAA]
consensusID : consensus_7966#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 836 fasta sequence
[CGAGACAAGGGGGGGATTCGCACTTCGCAGCTTGAGACCGGGAGCAGAACGAGCGGCGGAATGGGTTCCGGATCCGGATCTTTCCTCAAGGTGGTGGTAAAGAACTTGGATGTTCTTGCGGGGCCTATAGTTTCACTTGCTTATCCACTATATGCATCTGTTCGAGCGATAGAAACAAAATCTGCTGTAGATGATCAGCAATGGCTCACATACTGGGTGTTGTACTCGTTTATCACTCTATTTGAGCTCACTTTTTCTCCGGTACTTGAATGGCTTCCTTTATGGTCTTATGCTAAATTGTTTTTCAATTGCTGGTTGGTCTTGCCCTACTTCAATGGTGCTGCACATGTCTATGAACACTTTGTGAGGCCAATGGTTGTCAACCAGCAAATAGTTAATATCTGGTACATCCCAAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCAGCTGCGCAGAGATACATTGAACAAAATGGATCAAAAGCGTTTGAAAGTCTGGTTAACAAGTTTAAGGCTTCAAACACAAGGCGCTCCATTCTGGAGGAGGTAGAGGCTGAAAGAAGAGCCAAGGCTGAACTAGAAGCAGAAGCAAGGGATGAGAATCCTTTCTTCAATCAAAATTATCGGTACTAGAAGTCAGGGTTCATAGGATCAAATTTATGCTCATGGGGTATGTGTTCAAACGATCATGGATTAGTGTAAATAGGTTCAAGGATTCGAGTATTCCTTGCTACTCTTGGTGATGCAGGGTTCTTGNCATGAAGTAATAAATACTAGNGAACTAGATTTGGGCTTCTATCATATGNAAATGCTAGAATGAACAACAGCAT]
[+] EMBL CA767402 [CGAGACAAGGGGGGGATTCGCACTTCGCAGCTTGAGACCGGGAGCAGAACGAGCGGCGGAATGGGTTCCGGATCCGGATCTTTCCTCAAGGTGGTGGTAAAGAACTTGGATGTTCTTGCGGGGCCTATAGTTTCACTTGCTTATCCACTATATGCATCTGTTCGAGCGATAGAAACAAAATCTGCTGTAGATGATCAGCAATGGCTCACATACTGGGTGTTGTACTCGTTTATCACTCTATTTGAGCTCACTTTTTCTCCGGTACTTGAATGGCTTCCTTTATGGTCTTATGCTAAATTGTTTTTCAATTGCTGGTTGGTCTTGCCCTACTTCAATGGTGCTGCACATGTCTATGAACACTTTGTGAGGCCAATGGTTGTCAACCAGCAAATAGTTAATATCTGGTACATCCCAAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCAGCTGCGCAGAGATACATTGAACAAAATGGATCAAAAGCGTTTGAAAGTCTGGTTAACAAGTTTAAGGCTTCAAACACAAGGCGCTCCATTCTGGAGGAGGTAGAGGCTGAAAGAAGAGCCAAGGCTGAACTAGAAGCAGAAGCAAGGGATGAGAATCCTTTCTTCAATCAAAATTATCGGTACTAGAAGTCAGGGTTCATAGGATCAAATTTATGCTCATGGGGTATGTGTTCAAACGATCATGGATTAGTGTAAATAGGTTCAAGGATTCGAGTATTCCTTGCTACTCTTGGTGATGCAGGGTTCTTGNCATGAAGTAATAAATACTAGNGAACTAGATTTGGGCTTCTATCATATGNAAATGCTAGAATGAACAACAGCAT]
consensusID : consensus_7966#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 754 fasta sequence
[CGAGACNGGGGGGNGCNGAACGAGCGGCGGAATGGGTTCCGGATNCGGATCTTTCCTCAAGGTGGNGGNAAGAACTTGGATGNTCTTGCGGGGCCTACAGTTTACTTGTTTATCCACTATATGCATCNGTTCGAGCGATAGNAACACAATCTGCTGNAGATGATCAGCAATGGCTCACATACTGTGTGGTGNACTCGTTTATCACTCTATTTGAGCTCACTTTTTNTNCGGCACTNGAATGGCTNCCTTTATGGTCTTATGCTAAATTGATTTTCAATTGCTGGTTGGTCTTGCCCTACTTCAATGGTGCTGCACATGTCTATGAACACTTTGTGAGGCCNNTGGTTGTCANCCAGCNNATAGTTAATATCTGGTACATCCCAAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCANTTGCGCAGAGATNCATTGANCAAAATGGATCAAAAGCGTTTGAAAGTCTGGNGTAACAAGTNTAAGGCCTTCAAACACANCGGCGCTCCATTCTGGANGANGNAGAGGCTGAAAGAACAGCCAAGNGCTGAACTAGAAGCAGAAGCANNGGTNTGAGAATCCTTTCTTCAATCAAAATTATNGGTACTAGAAGTNANGCTTCATAGGATCAAATTTATGCTCATGGGGTNNGTACNTAAACGATCATGGGATTACNGTAAATAGGGCCNCAAAGGATTNGAGTATTCTTGCTNCTCTTGTGATNCNGGGATCTTGCCCTGAAGTTNTAAAN]
[+] EMBL CB096580 [CGAGACNGGGGGGNGCNGAACGAGCGGCGGAATGGGTTCCGGATNCGGATCTTTCCTCAAGGTGGNGGNAAGAACTTGGATGNTCTTGCGGGGCCTACAGTTTACTTGTTTATCCACTATATGCATCNGTTCGAGCGATAGNAACACAATCTGCTGNAGATGATCAGCAATGGCTCACATACTGTGTGGTGNACTCGTTTATCACTCTATTTGAGCTCACTTTTTNTNCGGCACTNGAATGGCTNCCTTTATGGTCTTATGCTAAATTGATTTTCAATTGCTGGTTGGTCTTGCCCTACTTCAATGGTGCTGCACATGTCTATGAACACTTTGTGAGGCCNNTGGTTGTCANCCAGCNNATAGTTAATATCTGGTACATCCCAAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCANTTGCGCAGAGATNCATTGANCAAAATGGATCAAAAGCGTTTGAAAGTCTGGNGTAACAAGTNTAAGGCCTTCAAACACANCGGCGCTCCATTCTGGANGANGNAGAGGCTGAAAGAACAGCCAAGNGCTGAACTAGAAGCAGAAGCANNGGTNTGAGAATCCTTTCTTCAATCAAAATTATNGGTACTAGAAGTNANGCTTCATAGGATCAAATTTATGCTCATGGGGTNNGTACNTAAACGATCATGGGATTACNGTAAATAGGGCCNCAAAGGATTNGAGTATTCTTGCTNCTCTTGTGATNCNGGGATCTTGCCCTGAAGTTNTAAAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7966#0 AGGCAGACAACACAAAAGAACAAGAAAGAGGAGTGGGTTGGCTAAAGGGTGAAGAAACCA 60
consensus_7966#1 ------------------------------------------------------------
consensus_7966#2 ------------------------------------------------------------
consensus_7966#0 AATAAGAAAAAGATAAAAAGGGGAAAAGGTCGCCCAGCGGCTGAAACCGNCCTGCATTGC 120
consensus_7966#1 ---------------------------------------------------------CGA 3
consensus_7966#2 ------------------------------------------------------------
consensus_7966#0 TCCTCGCTGCTTTGGATTCGCACTTCGCAGCTTGAGACCGGG---AGCAGGACGAGCGGC 177
consensus_7966#1 GACAAGGGGG---GGATTCGCACTTCGCAGCTTGAGACCGGG---AGCAGAACGAGCGGC 57
consensus_7966#2 --------------------------------CGAGACNGGGGGGNGCNGAACGAGCGGC 28
***** *** ** * *********
consensus_7966#0 GGAATGGGTTCCGGNTCCGGNTCTTTCCTCAAGGTGGTGGTAAAGAACTTGGATGTTCTT 237
consensus_7966#1 GGAATGGGTTCCGGATCCGGATCTTTCCTCAAGGTGGTGGTAAAGAACTTGGATGTTCTT 117
consensus_7966#2 GGAATGGGTTCCGGATNCGGATCTTTCCTCAAGGTGGNGGNAA-GAACTTGGATGNTCTT 87
************** * *** **************** ** ** *********** ****
consensus_7966#0 GCGGGGCCTATAGTTTCACTTGCTTATCCACTATATGCATCTNTTTCGAGCGATAGAAAC 297
consensus_7966#1 GCGGGGCCTATAGTTTCACTTGCTTATCCACTATATGCATCTGTT-CGAGCGATAGAAAC 176
consensus_7966#2 GCGGGGCCTACAGTTT-ACTTGTTTATCCACTATATGCATCNGTT-CGAGCGATAGNAAC 145
********** ***** ***** ****************** ** ********** ***
consensus_7966#0 AAAATCTGCTGTAGATGATCAGCAATGGCTCACATACTGGGTGTTGTACTCGTTTTATCA 357
consensus_7966#1 AAAATCTGCTGTAGATGATCAGCAATGGCTCACATACTGGGTGTTGTACTCGTTT-ATCA 235
consensus_7966#2 ACAATCTGCTGNAGATGATCAGCAATGGCTCACATACTGTGTGGTGNACTCGTTT-ATCA 204
* ********* *************************** *** ** ******** ****
consensus_7966#0 CTCTATTTTNAGCTCACTTTTTTCTNCGGTACTTGATTGGCTTCCTTTNATGGTCTTATG 417
consensus_7966#1 CTCTATTT-GAGCTCACTTTTT-CTCCGGTACTTGAATGGCTTCCTTTA-TGGTCTTATG 292
consensus_7966#2 CTCTATTT-GAGCTCACTTTTT-NTNCGGCACTNGAATGGCTNCCTTTA-TGGTCTTATG 261
******** ************ * *** *** ** ***** ***** **********
consensus_7966#0 CTAAATTGTTTTTCAATTGCTGGTTGGTCTTGCCCTACTTCAATGGTGCTGCACATGTCT 477
consensus_7966#1 CTAAATTGTTTTTCAATTGCTGGTTGGTCTTGCCCTACTTCAATGGTGCTGCACATGTCT 352
consensus_7966#2 CTAAATTGATTTTCAATTGCTGGTTGGTCTTGCCCTACTTCAATGGTGCTGCACATGTCT 321
******** ***************************************************
consensus_7966#0 ATGAACACTTTGTGAGGCCAATGGTTGTCAACCAGCAAATAGTTAATATCTGGTACATCC 537
consensus_7966#1 ATGAACACTTTGTGAGGCCAATGGTTGTCAACCAGCAAATAGTTAATATCTGGTACATCC 412
consensus_7966#2 ATGAACACTTTGTGAGGCCNNTGGTTGTCANCCAGCNNATAGTTAATATCTGGTACATCC 381
******************* ********* ***** **********************
consensus_7966#0 CAAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCAGCTGCGCAGAGATACATTG 597
consensus_7966#1 CAAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCAGCTGCGCAGAGATACATTG 472
consensus_7966#2 CAAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCANTTGCGCAGAGATNCATTG 441
***************************************** *********** *****
consensus_7966#0 AACAAAATGGATCAAGAGCGTTTGAAAGTCTGGT-TAACAAGTTTAAGGC-TTCAAACAC 655
consensus_7966#1 AACAAAATGGATCAAAAGCGTTTGAAAGTCTGGT-TAACAAGTTTAAGGC-TTCAAACAC 530
consensus_7966#2 ANCAAAATGGATCAAAAGCGTTTGAAAGTCTGGNGTAACAAGTNTAAGGCCTTCAAACAC 501
* ************* ***************** ******** ****** *********
consensus_7966#0 AA-GGCGCTCCATTCTGGAGGAGGTAGAGGCTGAAAGAAGAGCCAAGG-CTGAACTAGAA 713
consensus_7966#1 AA-GGCGCTCCATTCTGGAGGAGGTAGAGGCTGAAAGAAGAGCCAAGG-CTGAACTAGAA 588
consensus_7966#2 ANCGGCGCTCCATTCTGGANGANGNAGAGGCTGAAAGAACAGCCAAGNGCTGAACTAGAA 561
* **************** ** * ************** ******* ***********
consensus_7966#0 GCAGAAGCAAGGG-ATGAGAATCCCTTCTTCAATCAAAATTATCGGTACTAGAAGTCAGG 772
consensus_7966#1 GCAGAAGCAAGGG-ATGAGAATCCTTTCTTCAATCAAAATTATCGGTACTAGAAGTCAGG 647
consensus_7966#2 GCAGAAGCANNGGTNTGAGAATCCTTTCTTCAATCAAAATTATNGGTACTAGAAGTNANG 621
********* ** ********* ****************** ************ * *
consensus_7966#0 GTTCATAGGATCAAATTTATGCTCATGGGGTATGTGTTCAAACGATCATGG-ATTAGTGT 831
consensus_7966#1 GTTCATAGGATCAAATTTATGCTCATGGGGTATGTGTTCAAACGATCATGG-ATTAGTGT 706
consensus_7966#2 CTTCATAGGATCAAATTTATGCTCATGGGGTNNGTACNTAAACGATCATGGGATTACNGT 681
****************************** ** ************ **** **
consensus_7966#0 AAATAGGTTCT---AGGATTCGAGTATTC-TTGCTACTCTTGTTGATGCAGGGTTCTTGC 887
consensus_7966#1 AAATAGGTTCA---AGGATTCGAGTATTCCTTGCTACTCTTGGTGATGCAGGGTTCTTGN 763
consensus_7966#2 AAATAGGGCCNCAAAGGATTNGAGTATTC-TTGCTNCTCTTG-TGATNCNGGGATCTTGC 739
******* * ****** ******** ***** ****** **** * *** *****
consensus_7966#0 CATGAAGTAATAAATACTAGTGAACTAGATTTGG-CTTCTATCATATGAAAATGCTAGAA 946
consensus_7966#1 CATGAAGTAATAAATACTAGNGAACTAGATTTGGGCTTCTATCATATGNAAATGCTAGAA 823
consensus_7966#2 CCTGAAGTTNTAAAN--------------------------------------------- 754
* ****** ****
consensus_7966#0 TGAACAACAGCATCTGCAGACAACTGATTTGGGAAAAAAAAAA 989
consensus_7966#1 TGAACAACAGCAT------------------------------ 836
consensus_7966#2 -------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||