These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7969#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 850 fasta sequence [AAATCCACCCACCCAAACTCACGAATTCGATGGACACCGACCTCGGCGGCGGCGGCGGCGCGTCGGGGATGGACGAAGCGGAGGCGGCCTTCTTCGCGCGGCGCGGGCGGCGGTGCTGCTGCTTCCCCTGGCCCTCGTCGGCGTCGTCCCACCAGCGGGTCGGCGGGGCGGAGGAGGAGAGCTGGTGGCAGCGCGCCGTGGACGCGGTGCTCAAGGTGCGGGAGTGGTCGGAGCTGGTGGCCGGGCCGCGGTGGAAGACCTTCATCCGGCGGTTCGGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGCCGCGGCCGCACAACTACGGCCGGAAGCTCAACTACGACGCGCTCAGCTACGCGCTCAACTTCGACGAGGGCCACGGCGCCAGCCCCGAGGGCGACTACACCGGCTACCGCGACTTCTCCGCCCGCTTCGCCGCCCCGCCGGCCTCCGCCAAGTCGTCCATGGACCTCGGCGGCCGCGACGCCCCGCCGCTCTTCAACCCGCCGCCGCCCCACGACGGCGCCGGCCGGGCTTGACCTCTCGTTCCTCTCCCCCACAATCACTTCACCGGATCAAACGAGAACACGGCGTCCTGTCCTCGATTTGCTTCGGGTTGCAATGTCGTGATTTGGTGAGAAGCGAGATCGATCGTTGTTTCGGTTCGGTTCCCCTCTCATCTTCTGTTTCCTTCAATTGAGTTCGTTCGTTACTGTACAAAAAAGAACATAGATTTGTTTAATTCGTTCTCTGTCATCGAATTGTCGCCGTGAATTCGTCGATCGTGTCGTGCCACAGTTTTGTCCCGATTGAAGCAAACACGTTTGAAGTTTTTTGATCAAAA] [+] EMBL AK108304 [AAATCCACCCACCCAAACTCACGAATTCGATGGACACCGACCTCGGCGGCGGCGGCGGCGCGTCGGGGATGGACGAAGCGGAGGCGGCCTTCTTCGCGCGGCGCGGGCGGCGGTGCTGCTGCTTCCCCTGGCCCTCGTCGGCGTCGTCCCACCAGCGGGTCGGCGGGGCGGAGGAGGAGAGCTGGTGGCAGCGCGCCGTGGACGCGGTGCTCAAGGTGCGGGAGTGGTCGGAGCTGGTGGCCGGGCCGCGGTGGAAGACCTTCATCCGGCGGTTCGGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGCCGCGGCCGCACAACTACGGCCGGAAGCTCAACTACGACGCGCTCAGCTACGCGCTCAACTTCGACGAGGGCCACGGCGCCAGCCCCGAGGGCGACTACACCGGCTACCGCGACTTCTCCGCCCGCTTCGCCGCCCCGCCGGCCTCCGCCAAGTCGTCCATGGACCTCGGCGGCCGCGACGCCCCGCCGCTCTTCAACCCGCCGCCGCCCCACGACGGCGCCGGCCGGGCTTGACCTCTCGTTCCTCTCCCCCACAATCACTTCACCGGATCAAACGAGAACACGGCGTCCTGTCCTCGATTTGCTTCGGGTTGCAATGTCGTGATTTGGTGAGAAGCGAGATCGATCGTTGTTTCGGTTCGGTTCCCCTCTCATCTTCTGTTTCCTTCAATTGAGTTCGTTCGTTACTGTACAAAAAAGAACATAGATTTGTTTAATTCGTTCTCTGTCATCGAATTGTCGCCGTGAATTCGTCGATCGTGTCGTGCCACAGTTTTGTCCCGATTGAAGCAAACACGTTTGAAGTTTT ] [+] EMBL AU174409 [ CCGCTCTTCAACCCGCCGCCGCCCCACGACGGCGCCGGCCGGGCTTGACCTCTCGTTCCTCTCCCCCACAATCACTTCACCGGATCAAACGAGAACACGGCGTCCTGTCCTCGATTTGCTTCGGGTTGCAATGTCGTGATTTGGTGAGAAGCGAGATCGATCGTTGTTTCGGTTCGGTTCCCCTCTCATCTTCTGTTTCCTTCAATTGAGTTCGTTCGTTACTGTACAAAAAAGAACATAGATTTGTTTAATTCGTTCTCTGTCATCGAATTGTCGCCGTGAATTCGTCGATCGTGTCGTGCCACAGTTTTGTCCCGATTGAAGCAAACACGTTTGAAGTTTTTTGATCAAAA] [-] EMBL OS1321896 [ TTCNGTTCNGTTCCCCTCTCATCTTCTGTTTCCTTCAATTGAGTTCGTTCGTTACTGTACAAAAAAGAACATAGATTTGTTTAATTCGTTCTCTGTCATCGNATTGTCGCCGTGAATTCGTCGNTCGTGTCGTGCCACAGTTTTGTCCCGATTGAAGCAAANACGTTTGA ] consensusID : consensus_7969#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 337 fasta sequence [CCGCGTCGGGGGAGGGGGAGGGGAGAGGCGGCGGTGGTGGCGGCGGGAGGAAGCTCAACTACGACCCGCTCAGCTACGCGCTCAATTTCGACGAGGGCCACGGCGGCGCGTGCAGCC-CGGAGGGC-GACTACGCCGGCGCACCGACCGAATCTTTTTGTTATTGCTGGGCGGCGGAGGCGATAAGGGTGGACGTCATTTTCTCTCATTTGCTGCTGGTCGATGGTGTCCATAGAAGATGCGCTTGTTTTTGTTTGTATTTTTTTTGTTGCCTTTTTAAAATTTTGTTCACTGTAAATAAAAAAATAGAACTCTATCTATATATATGTATGGATCAAAT] [+] EMBL AK063118 [CCGCGTCGGGGGAGGGGGAGGGGAGAGGCGGCGGTGGTGGCGGCGGGAGGAAGCTCAACTACGACCCGCTCAGCTACGCGCTCAATTTCGACGAGGGCCACGGCGGCGCGTGCAGCC CGGAGGGC GACTACGCCGGCGCACCGACCGAATCTTTTTGTTATTGCTGGGCGGCGGAGGCGATAAGGGTGGACGTCATTTTCTCTCATTTGCTGCTGGTCGATGGTGTCCATAGAAGATGCGCTTGTTTTTGTTTGTATTTTTTTTGTTGCCTTTTTAAAATTTTGTTCACTGTAAATAAAAAAATAGAACTCTATCTATATATATGTATGGATCAAAT] [+] EMBL CB680776 [ accctcCCCCGCCGTCTCCCTCCGCCGCGCGGGGCTGACGTCGCCGGCGCACCGACCGAATCTTTTTGTTATTGCTGGGCGGCGGAGGCGATAAGGGTGGACGTCATTTTCTCTCATTTGCTGCTGGTCGATGGTGTCCATAGAAGATGCGCTTGTTTTTGTTTGTATTTTTTTTGTTGCCTTTTTAAAATTTTGTTCACTGTAAATAAAAAAATAGAACTCTAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7969#0 AAATCCACCCACCCAAACTCACGAATTCGATGGACACCGACCTCGGCGGCGGCGGCGGCG 60 consensus_7969#1 ------------------------------------------------------------ consensus_7969#0 CGTCGGGGATGGACGAAGCGGAGGCGGCCTTCTTCGCGCGGCGCGGGCGGCGGTGCTGCT 120 consensus_7969#1 ------------------------------------------------------------ consensus_7969#0 GCTTCCCCTGGCCCTCGTCGGCGTCGTCCCACCAGCGGGTCGGCGGGGCGGAGGAGGAGA 180 consensus_7969#1 ------------------------------------------------------------ consensus_7969#0 GCTGGTGGCAGCGCGCCGTGGACGCGGTGCTCAAGGTGCGGGAGTGGTCGGAGCTGGTGG 240 consensus_7969#1 ------------------------------------------------------------ consensus_7969#0 CCGGGCCGCGGTGGAAGACCTTCATCCGGCGGTTCGGCCGCGGCGGCGGCGGCGGCGGCG 300 consensus_7969#1 -------------------------------------------CCGCGTCGGGGGAGGGG 17 * *** *** ** ** * consensus_7969#0 GCGGCGGCGGGCCGCGGCCGCACAACTACGGCCGGAAGCTCAACTACGACGCGCTCAGCT 360 consensus_7969#1 GAGGGGAGAGGCGGCGGTGGTG--GCGGCGGGAGGAAGCTCAACTACGACCCGCTCAGCT 75 * ** * *** **** * * *** ***************** ********* consensus_7969#0 ACGCGCTCAACTTCGACGAGGGCCACGGCGCC------AGCCCCGAGGGCGACTACACCG 414 consensus_7969#1 ACGCGCTCAATTTCGACGAGGGCCACGGCGGCGCGTGCAGCCCGGAGGGCGACTACGCCG 135 ********** ******************* * ***** ************ *** consensus_7969#0 GCTACCGCGACTTCTCCGCCCGCTTCGCCGCCCCGCCGGCCTCCGCCAAGTCGTCCATGG 474 consensus_7969#1 GC-GCACCGAC----CGAATCTTTTTGTTAT--TGCTGGGC--GGCGGAGGCGATAAGGG 186 ** * **** * * ** * ** ** * ** ** ** * ** consensus_7969#0 ACCTCGGCGGCCGCGACGCCCCGCCGCTCTTCAACCCGCCGCCGCCCCACGACGGCGCCG 534 consensus_7969#1 TGGACGTCATTTTCTCTCATTTGCTGCTGGTCGA--TGGTGTCCATAGAAGATG-CGCTT 243 ** * * ** *** ** * * * * * ** * *** consensus_7969#0 GCCGGGCTTGACCTCTCGTTCCTCTCCCCCACAATCACTTCACCGGATCAAACGAGAACA 594 consensus_7969#1 GTTTTTGTTTGTATTTTTTTTGTTGCCTTTTTAAAATTTTGTTCACTGTAAATAAAAAAA 303 * ** * * ** * ** ** ** * *** * ** * consensus_7969#0 CGGCGTCCTGTCCTCGATTTGCTTCGGGTTGCAATGTCGTGATTTGGTGAGAAGCGAGAT 654 consensus_7969#1 TAGAACTCTATC-TATATATATGTATGGATCAAAT------------------------- 337 * ** ** * ** * * ** * *** consensus_7969#0 CGATCGTTGTTTCGGTTCGGTTCCCCTCTCATCTTCTGTTTCCTTCAATTGAGTTCGTTC 714 consensus_7969#1 ------------------------------------------------------------ consensus_7969#0 GTTACTGTACAAAAAAGAACATAGATTTGTTTAATTCGTTCTCTGTCATCGAATTGTCGC 774 consensus_7969#1 ------------------------------------------------------------ consensus_7969#0 CGTGAATTCGTCGATCGTGTCGTGCCACAGTTTTGTCCCGATTGAAGCAAACACGTTTGA 834 consensus_7969#1 ------------------------------------------------------------ consensus_7969#0 AGTTTTTTGATCAAAA 850 consensus_7969#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||