cluster # 7975

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Oryza sativa
cluster # 7975 cluster # 7975 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7975#0 length = 699 sequences # 3

consensus_7975#1 length = 676 sequences # 1
consensus_7975#2 length = 295 sequences # 1

consensusID : consensus_7975#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 699
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAGAAAACGTTTTATTGCAGGTTTATTTTTTTAAAAAAAATGGACCAAATTATATACAAAGCTCATTTTATACCACTAGGCACTAGCGTACAAGGATCATCGCAAAAACAAGAGGCAATGATCACATAACCCGTACTCAAT-CCAT-CCCATAAAGTACATAGCTAGAAGTTGATATTTTTTTTACAAGACGGAGGATGTACGTTGCATGAGGGATGTGACTGAGTCTCCCATAGCTGGTTATTTTGTGGGCCGAGCCAGATTCCCCAAAGAGAAGGCCCGGTTCGTTTCTTGGTTGGCCCTTGTGGCCCAAGAACAGCCTGGTAATGTAACAAGACGTTTGCTCTAACCACACCATGTCCACGGGAAAAGTACATCGATATGTACAGCATGTACAGTTAATATGAGGAACTTTCNA-CNGCGTTGCTGTATATATGGTCCCAATTCTGAGACTGAGCTTGAAATCATGTGTCCCCTGCAGGTTCAAGCAGTGAAAAGTCATAGAGATTTGTACTTCTCGATAAGATGCGACGCGTGCAGGCGAGACGTGGGTGTGATGGTGCACCCCAGGTTCCGGAGGTACGATATCTGCTTAGGTGTAGGTTCTGAGGAACCCATGGAGTTCTCTATCCTCTGCTTTTGGAAATGTTCCTGTCTCTCTCTCATCAAA]

[-] EMBL AU091912             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAGAAAACGTTTTATTGCAGGTTTATTTTTTTAAAAAAAATGGACCAAATTATATACAAAGCTCATTTTATACCACTAGGCACTAGCGTACAAGGATCATCGCAAAAACAAGAGGCAATGATCACATAACCCGTACTCAAT CCAT CCCATAAAGTACATAGCTAGAAGTTGATATTTTTTTTACAAGACGGAGGATGTACGTTGCATGAGGGATGTGACTGAGTCTCCCATAGCTGGTTATTTTGTGGGCCGAGCCAGATTCCCCAAAGAGAAGGCCCGGTTCGTTTCTTGGTTGGCCCTTGTGGCCCAAGAACAGCCTGGTAATGTAACAAGACGTTTGCTCTAACCACACCATGTCCACGGGAAAAGTACATCGATATGTACAGCATGTACAGTTAATATGAGGgaa                                                                                                                                                                                                                                                                   ]
[-] EMBL C73665               [                                                             TTTAAAAAAAATGGNCCAAATTATATACAAAGCTCATTTTATACCACTAGGCACTAGCGTACAAGGATCATCGCAAAAACAAGAGGCAATGATCACATAACCCGTACTCAATCCCATCCCCATAAAGTACATAGCTAGAAGTTGATATTTTTTTTACAAGACGGAGGATGTACGTTGCATGAGGGATGTGACTGAGTCTCCCATAGCTGGTTATTTTGT GGCCGAGCCAGATTCCCCAAAGAGAAGGCCCGGTTCGTTTCTTGGTT GCCCTTGTGGCCCAAGAACAGCCTGGTAATGTAACAAGACGTTTGCTCTAACCACACCATGTCCACGGGAAAAGTACATCGATATGTACAGCATGTACAGTTAATATGAGGAACTTTCNA CNGCGTTGCTGTATATATGGTCCCAATTCTGAGACTGAGCTTGAAATCATGTGT                                                                                                                                                                                                      ]
[-] EMBL OS1421A              [                                                                                                                                                                                                                                                                                                          CAAAGAGAA GCCCGG TCG TTCTTGGTTGGCCCTTGTGGCCCAAGAACACCCTGGTAATGTAACAAGACGTTTGCTCTAACCACACCATGTCCACGGGAAAAGTACATCGATATGTACAGCATGTACAGTTAATATGAGGAACTTTCAACCAGCGTTGCTGTATATATGGTCCCAATTCTGAGACTGAGCTTGAAATCATGTGTCCCCTGCAGGTTCAAGCAGTGAAAAGTCATAGAGATTTGTACTTCTCGATAAGATGCGACGCGTGCAGGCGAGACGTGGGTGTGATGGTGCACCCCAGGTTCCGGAGGTACGATATCTGCTTAGGTGTAGGTTCTGAGGAACCCATGGAGTTCTCTATCCTCTGCTTTTGGAAATGTTCCTGTCTCTCTCTCATCAAA]




>consensus_7975#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAGAAAACGTTTTATTGCAGGTTTATTT
TTTTAAAAAAAATGGACCAAATTATATACAAAGCTCATTTTATACCACTAGGCACTAGCG
TACAAGGATCATCGCAAAAACAAGAGGCAATGATCACATAACCCGTACTCAATCCATCCC
ATAAAGTACATAGCTAGAAGTTGATATTTTTTTTACAAGACGGAGGATGTACGTTGCATG
AGGGATGTGACTGAGTCTCCCATAGCTGGTTATTTTGTGGGCCGAGCCAGATTCCCCAAA
GAGAAGGCCCGGTTCGTTTCTTGGTTGGCCCTTGTGGCCCAAGAACAGCCTGGTAATGTA
ACAAGACGTTTGCTCTAACCACACCATGTCCACGGGAAAAGTACATCGATATGTACAGCA
TGTACAGTTAATATGAGGAACTTTCNACNGCGTTGCTGTATATATGGTCCCAATTCTGAG
ACTGAGCTTGAAATCATGTGTCCCCTGCAGGTTCAAGCAGTGAAAAGTCATAGAGATTTG
TACTTCTCGATAAGATGCGACGCGTGCAGGCGAGACGTGGGTGTGATGGTGCACCCCAGG
TTCCGGAGGTACGATATCTGCTTAGGTGTAGGTTCTGAGGAACCCATGGAGTTCTCTATC
CTCTGCTTTTGGAAATGTTCCTGTCTCTCTCTCATCAAA

consensusID : consensus_7975#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence

                              [TTTTTTTTTTTTTTTATACAAAGCTCATTTTATACCACTAGGCACTAGCGTACAAGGATCATCGCAAAAACAAGAGGCAATGATCACATAACCCGTACTCAATCCATCCCATAAAGTACATAGCTAGAAGTTGATATTTTTTTTACAAGACGGAGGATGTACGTTGCATGAGGGATGTGACTGAGTCTCCCATAGCTGGTTATTTTGTGGGCCGAGCCAGATTCCCCAAAGAGAAGGCCCGGTTCGTTTCTTGGTTGGCCCTTGTGGCCCAAGAACAGCCTGGTAATGTAACAAGACGTTTGCTCTAACCACACCATGTCCACGGGAAAAGTACATCGATATGTACAGCATGTACAGTTAATATGAGGAACTTTCACCAGCGTTGCTGTATATATGGCCCCAATTCTGAGACTGAGCTTGAAATCATGTGTCCCCTGCAGGTTCAAGCAGTGAAAAGTCATAGAGATTTGCACTTCTCGATAAGATGCGACCCGTGCAGGCAAGACGTGCGTGAGATGGTGCCCCCCAGGGTTCCGGAGGTACCAAATTCTGCTAAGGTGGAGGGGTCGAAGGAACCCATGCAGTTTTCTATTCCCCCGCTTTTTGGAAAGGGTCCTGGTTTCTCTATAAAAAAAAGGGGTCCCCTTTGGCTTGTGCCCTGGGCAACAAGCCTTAT]

[+] EMBL CA761055             [TTTTTTTTTTTTTTTATACAAAGCTCATTTTATACCACTAGGCACTAGCGTACAAGGATCATCGCAAAAACAAGAGGCAATGATCACATAACCCGTACTCAATCCATCCCATAAAGTACATAGCTAGAAGTTGATATTTTTTTTACAAGACGGAGGATGTACGTTGCATGAGGGATGTGACTGAGTCTCCCATAGCTGGTTATTTTGTGGGCCGAGCCAGATTCCCCAAAGAGAAGGCCCGGTTCGTTTCTTGGTTGGCCCTTGTGGCCCAAGAACAGCCTGGTAATGTAACAAGACGTTTGCTCTAACCACACCATGTCCACGGGAAAAGTACATCGATATGTACAGCATGTACAGTTAATATGAGGAACTTTCACCAGCGTTGCTGTATATATGGCCCCAATTCTGAGACTGAGCTTGAAATCATGTGTCCCCTGCAGGTTCAAGCAGTGAAAAGTCATAGAGATTTGCACTTCTCGATAAGATGCGACCCGTGCAGGCAAGACGTGCGTGAGATGGTGCCCCCCAGGGTTCCGGAGGTACCAAATTCTGCTAAGGTGGAGGGGTCGAAGGAACCCATGCAGTTTTCTATTCCCCCGCTTTTTGGAAAGGGTCCTGGTTTCTCTATAAAAAAAAGGGGTCCCCTTTGGCTTGTGCCCTGGGCAACAAGCCTTAT]




>consensus_7975#1
TTTTTTTTTTTTTTTATACAAAGCTCATTTTATACCACTAGGCACTAGCGTACAAGGATC
ATCGCAAAAACAAGAGGCAATGATCACATAACCCGTACTCAATCCATCCCATAAAGTACA
TAGCTAGAAGTTGATATTTTTTTTACAAGACGGAGGATGTACGTTGCATGAGGGATGTGA
CTGAGTCTCCCATAGCTGGTTATTTTGTGGGCCGAGCCAGATTCCCCAAAGAGAAGGCCC
GGTTCGTTTCTTGGTTGGCCCTTGTGGCCCAAGAACAGCCTGGTAATGTAACAAGACGTT
TGCTCTAACCACACCATGTCCACGGGAAAAGTACATCGATATGTACAGCATGTACAGTTA
ATATGAGGAACTTTCACCAGCGTTGCTGTATATATGGCCCCAATTCTGAGACTGAGCTTG
AAATCATGTGTCCCCTGCAGGTTCAAGCAGTGAAAAGTCATAGAGATTTGCACTTCTCGA
TAAGATGCGACCCGTGCAGGCAAGACGTGCGTGAGATGGTGCCCCCCAGGGTTCCGGAGG
TACCAAATTCTGCTAAGGTGGAGGGGTCGAAGGAACCCATGCAGTTTTCTATTCCCCCGC
TTTTTGGAAAGGGTCCTGGTTTCTCTATAAAAAAAAGGGGTCCCCTTTGGCTTGTGCCCT
GGGCAACAAGCCTTAT

consensusID : consensus_7975#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence

                              [TTTTTTTTTTGATCACATAACCCGTACTCAATCCATCCCATAAAGTACATAGCTAGAAGTTGATATTTTTTTACAAGACGGAGGATGTACTGTTGCATGAGGGATGTGACTGAGTCTCCCATAGCTGGTTATTATTTGTGGGCCGAGCCAGATTCCGCCAAAGAGAATGGCCGGTTCGTTTCTTGGTTGGCCCTTGTGGCCCAATGAACAGCCTGTGTCAATGTAACAGAGACGTTTGCGTCGTAACCGNAACCCAGTGGTCCCACGTGGAACACATGTACATCGATCATGTACC]

[-] EMBL BQ906177             [TTTTTTTTTTGATCACATAACCCGTACTCAATCCATCCCATAAAGTACATAGCTAGAAGTTGATATTTTTTTACAAGACGGAGGATGTACTGTTGCATGAGGGATGTGACTGAGTCTCCCATAGCTGGTTATTATTTGTGGGCCGAGCCAGATTCCGCCAAAGAGAATGGCCGGTTCGTTTCTTGGTTGGCCCTTGTGGCCCAATGAACAGCCTGTGTCAATGTAACAGAGACGTTTGCGTCGTAACCGNAACCCAGTGGTCCCACGTGGAACACATGTACATCGATCATGTACC]




>consensus_7975#2
TTTTTTTTTTGATCACATAACCCGTACTCAATCCATCCCATAAAGTACATAGCTAGAAGT
TGATATTTTTTTACAAGACGGAGGATGTACTGTTGCATGAGGGATGTGACTGAGTCTCCC
ATAGCTGGTTATTATTTGTGGGCCGAGCCAGATTCCGCCAAAGAGAATGGCCGGTTCGTT
TCTTGGTTGGCCCTTGTGGCCCAATGAACAGCCTGTGTCAATGTAACAGAGACGTTTGCG
TCGTAACCGNAACCCAGTGGTCCCACGTGGAACACATGTACATCGATCATGTACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7975#1      ------------------------------------------------------------
consensus_7975#2      ------------------------------------------------------------
consensus_7975#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAGAAAACGTTTTATTGCAGGTTTATTT 60
                                                                                  

consensus_7975#1      ----------TTTTTTTTTTTTTTTATACAAAGCTCATTTTATACCACTAGGCACTAGCG 50
consensus_7975#2      ------------------------------------------------------------
consensus_7975#0      TTTTAAAAAAAATGGACCAAATTATATACAAAGCTCATTTTATACCACTAGGCACTAGCG 120
                                                                                  

consensus_7975#1      TACAAGGATCATCGCAAAAACAAGAGGCAATGATCACATAACCCGTACTCAATCCATCCC 110
consensus_7975#2      ---------------------TTTTTTTTTTGATCACATAACCCGTACTCAATCCATCCC 39
consensus_7975#0      TACAAGGATCATCGCAAAAACAAGAGGCAATGATCACATAACCCGTACTCAATCCATCCC 180
                                                    ******************************

consensus_7975#1      ATAAAGTACATAGCTAGAAGTTGATATTTTTTTTACAAGACGGAGGATGTAC-GTTGCAT 169
consensus_7975#2      ATAAAGTACATAGCTAGAAGTTGATATTTTTTT-ACAAGACGGAGGATGTACTGTTGCAT 98
consensus_7975#0      ATAAAGTACATAGCTAGAAGTTGATATTTTTTTTACAAGACGGAGGATGTAC-GTTGCAT 239
                      ********************************* ****************** *******

consensus_7975#1      GAGGGATGTGACTGAGTCTCCCATAGCTGGTTAT--TTTGTGGGCCGAGCCAGATTCC-C 226
consensus_7975#2      GAGGGATGTGACTGAGTCTCCCATAGCTGGTTATTATTTGTGGGCCGAGCCAGATTCCGC 158
consensus_7975#0      GAGGGATGTGACTGAGTCTCCCATAGCTGGTTAT--TTTGTGGGCCGAGCCAGATTCC-C 296
                      **********************************  ********************** *

consensus_7975#1      CAAAGAGAAGGCCCGGTTCGTTTCTTGGTTGGCCCTTGTGGCCCAA-GAACAGCCTGG-- 283
consensus_7975#2      CAAAGAGAATGGCCGGTTCGTTTCTTGGTTGGCCCTTGTGGCCCAATGAACAGCCTGTGT 218
consensus_7975#0      CAAAGAGAAGGCCCGGTTCGTTTCTTGGTTGGCCCTTGTGGCCCAA-GAACAGCCTGG-- 353
                      ********* * ********************************** **********   

consensus_7975#1      TAATGTAACA-AGACGTTTGCTC--TAACCACACC---ATGTCCACGGGAAAAGTACATC 337
consensus_7975#2      CAATGTAACAGAGACGTTTGCGTCGTAACCGNAACCCAGTGGTCCCACGTGGAACACAT- 277
consensus_7975#0      TAATGTAACA-AGACGTTTGCTC--TAACCACACC---ATGTCCACGGGAAAAGTACATC 407
                       ********* **********    *****  * *    **  * *  *   *  **** 

consensus_7975#1      GATATGTACAGCATGTACAGTTAATATGAGGAACTTTCACCAGCGTTGCTGTATATATGG 397
consensus_7975#2      -GTACATCGATCATGTACC----------------------------------------- 295
consensus_7975#0      GATATGTACAGCATGTACAGTTAATATGAGGAACTTTCNACNGCGTTGCTGTATATATGG 467
                        **  *  * *******                                          

consensus_7975#1      CCCCAATTCTGAGACTGAGCTTGAAATCATGTGTCCCCTGCAGGTTCAAGCAGTGAAAAG 457
consensus_7975#2      ------------------------------------------------------------
consensus_7975#0      TCCCAATTCTGAGACTGAGCTTGAAATCATGTGTCCCCTGCAGGTTCAAGCAGTGAAAAG 527
                                                                                  

consensus_7975#1      TCATAGAGATTTGCACTTCTCGATAAGATGCGACCCGTGCAGGCAAGACGTGCGTGAGAT 517
consensus_7975#2      ------------------------------------------------------------
consensus_7975#0      TCATAGAGATTTGTACTTCTCGATAAGATGCGACGCGTGCAGGCGAGACGTGGGTGTGAT 587
                                                                                  

consensus_7975#1      GGTGCCCCCCAGGGTTCCGGAGGTACCAAATTCTGCTAAGGTGGAGGGGTCGAAGGAACC 577
consensus_7975#2      ------------------------------------------------------------
consensus_7975#0      GGTGCACCCCAGG-TTCCGGAGGTACGATAT-CTGCTTAGGTGTAGGT-TCTGAGGAACC 644
                                                                                  

consensus_7975#1      CATGCAGTTTTCTATTCCCCCGCTTTTTGGAAAGGGTCCTGGTTTCTCTATAAAAAAAAG 637
consensus_7975#2      ------------------------------------------------------------
consensus_7975#0      CATGGAGTTCTCTAT--CCTCTGCTTTTGGAAATGTTCCTGTCTCTCTCTCATCAAA--- 699
                                                                                  

consensus_7975#1      GGGTCCCCTTTGGCTTGTGCCCTGGGCAACAAGCCTTAT 676
consensus_7975#2      ---------------------------------------
consensus_7975#0      ---------------------------------------