cluster # 7980

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Oryza sativa
cluster # 7980 cluster # 7980 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7980#0 length = 592 sequences # 4

consensus_7980#1 length = 372 sequences # 1

consensusID : consensus_7980#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 592
fasta sequence

                              [CTCCATCCATCCACCAACCCCAAGAAACCCCCCTGCGCGAGCCAAACCCAACAACCATGGCGACCCCGTTCTGCGCCGCCGCGTGCCGCCTCTCCATCTCCCCGCCCAACGCGGCGCCGTCGGCGCCCGGCCGCGCCCGCGCCCTCGCCCGGCGTGGCCTGGTGGTGGCGGTGCACGCGGAGGCGGGGGTCGGCGGGATAAACCCGTCCATCCGGAAGGAGGAGGAGAAGGTGGTCGACACTGTCCTCGCCGGCGAGCTCTCCAAGCCGCTCACCCCGTACTGCCGGTGCTGGAGATCAGGCACATTTCCCCTTTGTGATGGAAGCCATGTGAAGCACAACAAAGCAACGGGTGATAATGTGGGGCCCTTACTTGTTAAGAAGTAGAATGAGTTTCTTCCTTGTTAAAAAATAAGAAGATGAAATGAATTTCTTCATCCTGGCCTCATGTTGAGTCAAACAATATTTGCATGTCATAGTTTGTATGATCATTTTTGTCACATGTAAAGATAATGCTGTGTCAAAGTAACTTTTATTGATCCCTCAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCCGTTACGTAGCGTAT]

[+] EMBL AK070358             [CTCCATCCATCCACCAACCCCAAGAAACCCCCCTGCGCGAGCCAAACCCAACAACCATGGCGACCCCGTTCTGCGCCGCCGCGTGCCGCCTCTCCATCTCCCCGCCCAACGCGGCGCCGTCGGCGCCCGGCCGCGCCCGCGCCCTCGCCCGGCGTGGCCTGGTGGTGGCGGTGCACGCGGAGGCGGGGGTCGGCGGGATAAACCCGTCCATCCGGAAGGAGGAGGAGAAGGTGGTCGACACTGTCCTCGCCGGCGAGCTCTCCAAGCCGCTCACCCCGTACTGCCGGTGCTGGAGATCAGGCACATTTCCCCTTTGTGATGGAAGCCATGTGAAGCACAACAAAGCAACGGGTGATAATGTGGGGCCCTTACTTGTTAAGAAGTAGAATGAGTTTCTTCCTTGTTAAAAAATAAGAAGATGAAATGAATTTCTTCATCCTGGCCTCATGTTGAGTCAAACAATATTTGCATGTCATAGTTTGTATGATCATTTTTGTCACATGTAAAGATAATGCTGTGTCAAAGTAACTTTTATTGATCCCTC                                                ]
[+] EMBL AU163706             [                                                                     TCTGCGCCGCCGCGTGCCGCCTCTCCATCTCCCCGCCCAACGCGGCGCCGTCGGCGCCCGGCCGCGCCCGCGCCCTCGCCCGGCGTGGCCTGGTGGTGGCGGTGCGCGCGGAGGCGGGGGTCGGCGGGATAAACCCGTCCATCCGGAAGGAGGAGGAGAAGGTGGTCGACACTGTCCTCGCCGGCGAGCTCTCCAAGCCGCTCACCCCGTACTGCCGGTGCTGGAGATCAGGCACATTTCCCCTTTGTGATGGAAGCCATGTGAAGCACAACAAAGCAACGGGTGATAATGTGGGGCCCTTACTTGTTAAGAAGTAGAATGAGTTTCTTCCTTGTTAAAAAATAAGAAGATGAAATGAATTTCTTCATCCTGGCCTCATGTTGAGTCAAACAATATTTGCATGTCATAGTTTGTATGATCATTTTTGTCACATGTAAAGATAATGCTGTGTCAAAGTAACTTTTATTGATCCCTCAAAAAAAAA                                       ]
[+] EMBL CF298094             [                                                                                                                                                                                                                                                                                                                                                                                                      AGTTTCTTCCTTGTTAAAAAATAAGAAGATGAAATGAATTTCTTCATCCTGGCCTCATGTTGAGTCAAACAATATTTGCATGTCATAGTTTGTATGATCATTTTTGTCACATGTAAAGATAATGCTGTGTCAAAGTAACTTTTATTGATCCCTCTTTTTAAAAAAAAAAAAAAAACACTGTCATGCCCGTTACGTAGCGTAT]
[-] EMBL CF298093             [                                                                                                                                                                                                                                                                                                                                                                                                              CCTTGTTAAAAAATAAGAAGATGAAATGAATTTCTTCATCCTGGCCTCATGTTGAGTCAAACAATATTTGCATGTCATAGTTTGTATGATCATTTTTGTCACATGTAAAGATAATGCTGTGTCAAAGTAACTTTTATTGATCCCTCAAAAAAAAA                                       ]




>consensus_7980#0
CTCCATCCATCCACCAACCCCAAGAAACCCCCCTGCGCGAGCCAAACCCAACAACCATGG
CGACCCCGTTCTGCGCCGCCGCGTGCCGCCTCTCCATCTCCCCGCCCAACGCGGCGCCGT
CGGCGCCCGGCCGCGCCCGCGCCCTCGCCCGGCGTGGCCTGGTGGTGGCGGTGCACGCGG
AGGCGGGGGTCGGCGGGATAAACCCGTCCATCCGGAAGGAGGAGGAGAAGGTGGTCGACA
CTGTCCTCGCCGGCGAGCTCTCCAAGCCGCTCACCCCGTACTGCCGGTGCTGGAGATCAG
GCACATTTCCCCTTTGTGATGGAAGCCATGTGAAGCACAACAAAGCAACGGGTGATAATG
TGGGGCCCTTACTTGTTAAGAAGTAGAATGAGTTTCTTCCTTGTTAAAAAATAAGAAGAT
GAAATGAATTTCTTCATCCTGGCCTCATGTTGAGTCAAACAATATTTGCATGTCATAGTT
TGTATGATCATTTTTGTCACATGTAAAGATAATGCTGTGTCAAAGTAACTTTTATTGATC
CCTCAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCCGTTACGTAGCGTAT

consensusID : consensus_7980#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 372
fasta sequence

                              [ACAACCATGGGGACCCCGTTCTGNGCNGCCGCGTGCCGCCTCTCCATCTNCCCGCCCAACGCGGCGCCGTCGGNCGTNNCGCGCCCGCNCNCTCGCCCGGNGTGGCCTGGTGGTGGNGGTGCGCGCGGAGGCGNGGGTCGNCGGGATAAACCCGTCCATCCGGAAGGAGGAGGAGAAGGTGGTCGACACTNTNCTCGCCGGCGAGCTCTCCAAGCCGNTCACCCCGTACTGCCGGTGCTGGAGATCAGGCACATTTCCCCTTTGTGATGGAAGCCATGTGAAGCACAACAAAGCAACGGGTGATAATNTGGGGCCTNTACTTGTTAAGAAGTAGAATTGAGTTTCTTCCTTGTTAAAAAATAAAGAAGGNTG]

[+] EMBL OSS15818A            [ACAACCATGGGGACCCCGTTCTGNGCNGCCGCGTGCCGCCTCTCCATCTNCCCGCCCAACGCGGCGCCGTCGGNCGTNNCGCGCCCGCNCNCTCGCCCGGNGTGGCCTGGTGGTGGNGGTGCGCGCGGAGGCGNGGGTCGNCGGGATAAACCCGTCCATCCGGAAGGAGGAGGAGAAGGTGGTCGACACTNTNCTCGCCGGCGAGCTCTCCAAGCCGNTCACCCCGTACTGCCGGTGCTGGAGATCAGGCACATTTCCCCTTTGTGATGGAAGCCATGTGAAGCACAACAAAGCAACGGGTGATAATNTGGGGCCTNTACTTGTTAAGAAGTAGAATTGAGTTTCTTCCTTGTTAAAAAATAAAGAAGGNTG]




>consensus_7980#1
ACAACCATGGGGACCCCGTTCTGNGCNGCCGCGTGCCGCCTCTCCATCTNCCCGCCCAAC
GCGGCGCCGTCGGNCGTNNCGCGCCCGCNCNCTCGCCCGGNGTGGCCTGGTGGTGGNGGT
GCGCGCGGAGGCGNGGGTCGNCGGGATAAACCCGTCCATCCGGAAGGAGGAGGAGAAGGT
GGTCGACACTNTNCTCGCCGGCGAGCTCTCCAAGCCGNTCACCCCGTACTGCCGGTGCTG
GAGATCAGGCACATTTCCCCTTTGTGATGGAAGCCATGTGAAGCACAACAAAGCAACGGG
TGATAATNTGGGGCCTNTACTTGTTAAGAAGTAGAATTGAGTTTCTTCCTTGTTAAAAAA
TAAAGAAGGNTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7980#0      CTCCATCCATCCACCAACCCCAAGAAACCCCCCTGCGCGAGCCAAACCCAACAACCATGG 60
consensus_7980#1      --------------------------------------------------ACAACCATGG 10
                                                                        **********

consensus_7980#0      CGACCCCGTTCTGCGCCGCCGCGTGCCGCCTCTCCATCTCCCCGCCCAACGCGGCGCCGT 120
consensus_7980#1      GGACCCCGTTCTGNGCNGCCGCGTGCCGCCTCTCCATCTNCCCGCCCAACGCGGCGCCGT 70
                       ************ ** ********************** ********************

consensus_7980#0      CGGCGCCCGGCCGCGCCCGCGCCCTCGCCCGGCGTGGCCTGGTGGTGGCGGTGCACGCGG 180
consensus_7980#1      CGGN--CGTNNCGCGCCCGCNCNCTCGCCCGGNGTGGCCTGGTGGTGGNGGTGCGCGCGG 128
                      ***   *    ********* * ********* *************** ***** *****

consensus_7980#0      AGGCGGGGGTCGGCGGGATAAACCCGTCCATCCGGAAGGAGGAGGAGAAGGTGGTCGACA 240
consensus_7980#1      AGGCGNGGGTCGNCGGGATAAACCCGTCCATCCGGAAGGAGGAGGAGAAGGTGGTCGACA 188
                      ***** ****** ***********************************************

consensus_7980#0      CTGTCCTCGCCGGCGAGCTCTCCAAGCCGCTCACCCCGTACTGCCGGTGCTGGAGATCAG 300
consensus_7980#1      CTNTNCTCGCCGGCGAGCTCTCCAAGCCGNTCACCCCGTACTGCCGGTGCTGGAGATCAG 248
                      ** * ************************ ******************************

consensus_7980#0      GCACATTTCCCCTTTGTGATGGAAGCCATGTGAAGCACAACAAAGCAACGGGTGATAATG 360
consensus_7980#1      GCACATTTCCCCTTTGTGATGGAAGCCATGTGAAGCACAACAAAGCAACGGGTGATAATN 308
                      *********************************************************** 

consensus_7980#0      TGGGGCCCTTACTTGTTAAGAAGTAGAAT-GAGTTTCTTCCTTGTTAAAAAATAAGAAGA 419
consensus_7980#1      TGGGGCCTNTACTTGTTAAGAAGTAGAATTGAGTTTCTTCCTTGTTAAAAAATAAAGAAG 368
                      *******  ******************** *************************  *  

consensus_7980#0      TGAAATGAATTTCTTCATCCTGGCCTCATGTTGAGTCAAACAATATTTGCATGTCATAGT 479
consensus_7980#1      GNTG-------------------------------------------------------- 372
                                                                                  

consensus_7980#0      TTGTATGATCATTTTTGTCACATGTAAAGATAATGCTGTGTCAAAGTAACTTTTATTGAT 539
consensus_7980#1      ------------------------------------------------------------
                                                                                  

consensus_7980#0      CCCTCAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCCGTTACGTAGCGTAT 592
consensus_7980#1      -----------------------------------------------------