These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7980#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 592 fasta sequence [CTCCATCCATCCACCAACCCCAAGAAACCCCCCTGCGCGAGCCAAACCCAACAACCATGGCGACCCCGTTCTGCGCCGCCGCGTGCCGCCTCTCCATCTCCCCGCCCAACGCGGCGCCGTCGGCGCCCGGCCGCGCCCGCGCCCTCGCCCGGCGTGGCCTGGTGGTGGCGGTGCACGCGGAGGCGGGGGTCGGCGGGATAAACCCGTCCATCCGGAAGGAGGAGGAGAAGGTGGTCGACACTGTCCTCGCCGGCGAGCTCTCCAAGCCGCTCACCCCGTACTGCCGGTGCTGGAGATCAGGCACATTTCCCCTTTGTGATGGAAGCCATGTGAAGCACAACAAAGCAACGGGTGATAATGTGGGGCCCTTACTTGTTAAGAAGTAGAATGAGTTTCTTCCTTGTTAAAAAATAAGAAGATGAAATGAATTTCTTCATCCTGGCCTCATGTTGAGTCAAACAATATTTGCATGTCATAGTTTGTATGATCATTTTTGTCACATGTAAAGATAATGCTGTGTCAAAGTAACTTTTATTGATCCCTCAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCCGTTACGTAGCGTAT] [+] EMBL AK070358 [CTCCATCCATCCACCAACCCCAAGAAACCCCCCTGCGCGAGCCAAACCCAACAACCATGGCGACCCCGTTCTGCGCCGCCGCGTGCCGCCTCTCCATCTCCCCGCCCAACGCGGCGCCGTCGGCGCCCGGCCGCGCCCGCGCCCTCGCCCGGCGTGGCCTGGTGGTGGCGGTGCACGCGGAGGCGGGGGTCGGCGGGATAAACCCGTCCATCCGGAAGGAGGAGGAGAAGGTGGTCGACACTGTCCTCGCCGGCGAGCTCTCCAAGCCGCTCACCCCGTACTGCCGGTGCTGGAGATCAGGCACATTTCCCCTTTGTGATGGAAGCCATGTGAAGCACAACAAAGCAACGGGTGATAATGTGGGGCCCTTACTTGTTAAGAAGTAGAATGAGTTTCTTCCTTGTTAAAAAATAAGAAGATGAAATGAATTTCTTCATCCTGGCCTCATGTTGAGTCAAACAATATTTGCATGTCATAGTTTGTATGATCATTTTTGTCACATGTAAAGATAATGCTGTGTCAAAGTAACTTTTATTGATCCCTC ] [+] EMBL AU163706 [ TCTGCGCCGCCGCGTGCCGCCTCTCCATCTCCCCGCCCAACGCGGCGCCGTCGGCGCCCGGCCGCGCCCGCGCCCTCGCCCGGCGTGGCCTGGTGGTGGCGGTGCGCGCGGAGGCGGGGGTCGGCGGGATAAACCCGTCCATCCGGAAGGAGGAGGAGAAGGTGGTCGACACTGTCCTCGCCGGCGAGCTCTCCAAGCCGCTCACCCCGTACTGCCGGTGCTGGAGATCAGGCACATTTCCCCTTTGTGATGGAAGCCATGTGAAGCACAACAAAGCAACGGGTGATAATGTGGGGCCCTTACTTGTTAAGAAGTAGAATGAGTTTCTTCCTTGTTAAAAAATAAGAAGATGAAATGAATTTCTTCATCCTGGCCTCATGTTGAGTCAAACAATATTTGCATGTCATAGTTTGTATGATCATTTTTGTCACATGTAAAGATAATGCTGTGTCAAAGTAACTTTTATTGATCCCTCAAAAAAAAA ] [+] EMBL CF298094 [ AGTTTCTTCCTTGTTAAAAAATAAGAAGATGAAATGAATTTCTTCATCCTGGCCTCATGTTGAGTCAAACAATATTTGCATGTCATAGTTTGTATGATCATTTTTGTCACATGTAAAGATAATGCTGTGTCAAAGTAACTTTTATTGATCCCTCTTTTTAAAAAAAAAAAAAAAACACTGTCATGCCCGTTACGTAGCGTAT] [-] EMBL CF298093 [ CCTTGTTAAAAAATAAGAAGATGAAATGAATTTCTTCATCCTGGCCTCATGTTGAGTCAAACAATATTTGCATGTCATAGTTTGTATGATCATTTTTGTCACATGTAAAGATAATGCTGTGTCAAAGTAACTTTTATTGATCCCTCAAAAAAAAA ] consensusID : consensus_7980#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence [ACAACCATGGGGACCCCGTTCTGNGCNGCCGCGTGCCGCCTCTCCATCTNCCCGCCCAACGCGGCGCCGTCGGNCGTNNCGCGCCCGCNCNCTCGCCCGGNGTGGCCTGGTGGTGGNGGTGCGCGCGGAGGCGNGGGTCGNCGGGATAAACCCGTCCATCCGGAAGGAGGAGGAGAAGGTGGTCGACACTNTNCTCGCCGGCGAGCTCTCCAAGCCGNTCACCCCGTACTGCCGGTGCTGGAGATCAGGCACATTTCCCCTTTGTGATGGAAGCCATGTGAAGCACAACAAAGCAACGGGTGATAATNTGGGGCCTNTACTTGTTAAGAAGTAGAATTGAGTTTCTTCCTTGTTAAAAAATAAAGAAGGNTG] [+] EMBL OSS15818A [ACAACCATGGGGACCCCGTTCTGNGCNGCCGCGTGCCGCCTCTCCATCTNCCCGCCCAACGCGGCGCCGTCGGNCGTNNCGCGCCCGCNCNCTCGCCCGGNGTGGCCTGGTGGTGGNGGTGCGCGCGGAGGCGNGGGTCGNCGGGATAAACCCGTCCATCCGGAAGGAGGAGGAGAAGGTGGTCGACACTNTNCTCGCCGGCGAGCTCTCCAAGCCGNTCACCCCGTACTGCCGGTGCTGGAGATCAGGCACATTTCCCCTTTGTGATGGAAGCCATGTGAAGCACAACAAAGCAACGGGTGATAATNTGGGGCCTNTACTTGTTAAGAAGTAGAATTGAGTTTCTTCCTTGTTAAAAAATAAAGAAGGNTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7980#0 CTCCATCCATCCACCAACCCCAAGAAACCCCCCTGCGCGAGCCAAACCCAACAACCATGG 60 consensus_7980#1 --------------------------------------------------ACAACCATGG 10 ********** consensus_7980#0 CGACCCCGTTCTGCGCCGCCGCGTGCCGCCTCTCCATCTCCCCGCCCAACGCGGCGCCGT 120 consensus_7980#1 GGACCCCGTTCTGNGCNGCCGCGTGCCGCCTCTCCATCTNCCCGCCCAACGCGGCGCCGT 70 ************ ** ********************** ******************** consensus_7980#0 CGGCGCCCGGCCGCGCCCGCGCCCTCGCCCGGCGTGGCCTGGTGGTGGCGGTGCACGCGG 180 consensus_7980#1 CGGN--CGTNNCGCGCCCGCNCNCTCGCCCGGNGTGGCCTGGTGGTGGNGGTGCGCGCGG 128 *** * ********* * ********* *************** ***** ***** consensus_7980#0 AGGCGGGGGTCGGCGGGATAAACCCGTCCATCCGGAAGGAGGAGGAGAAGGTGGTCGACA 240 consensus_7980#1 AGGCGNGGGTCGNCGGGATAAACCCGTCCATCCGGAAGGAGGAGGAGAAGGTGGTCGACA 188 ***** ****** *********************************************** consensus_7980#0 CTGTCCTCGCCGGCGAGCTCTCCAAGCCGCTCACCCCGTACTGCCGGTGCTGGAGATCAG 300 consensus_7980#1 CTNTNCTCGCCGGCGAGCTCTCCAAGCCGNTCACCCCGTACTGCCGGTGCTGGAGATCAG 248 ** * ************************ ****************************** consensus_7980#0 GCACATTTCCCCTTTGTGATGGAAGCCATGTGAAGCACAACAAAGCAACGGGTGATAATG 360 consensus_7980#1 GCACATTTCCCCTTTGTGATGGAAGCCATGTGAAGCACAACAAAGCAACGGGTGATAATN 308 *********************************************************** consensus_7980#0 TGGGGCCCTTACTTGTTAAGAAGTAGAAT-GAGTTTCTTCCTTGTTAAAAAATAAGAAGA 419 consensus_7980#1 TGGGGCCTNTACTTGTTAAGAAGTAGAATTGAGTTTCTTCCTTGTTAAAAAATAAAGAAG 368 ******* ******************** ************************* * consensus_7980#0 TGAAATGAATTTCTTCATCCTGGCCTCATGTTGAGTCAAACAATATTTGCATGTCATAGT 479 consensus_7980#1 GNTG-------------------------------------------------------- 372 consensus_7980#0 TTGTATGATCATTTTTGTCACATGTAAAGATAATGCTGTGTCAAAGTAACTTTTATTGAT 539 consensus_7980#1 ------------------------------------------------------------ consensus_7980#0 CCCTCAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCCGTTACGTAGCGTAT 592 consensus_7980#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||