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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7984#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 902 fasta sequence
[ACTATATAAGACACTTGCGGGAACTTGGAGGGCATGATGCTGAGAGGGATGATGGGGGCCGTGAAAGGCATGGTGCACGAGCTGTCAGAAGGCTACCTGGTCCTAATAACAGGGTTCCTGCTGCAGATGGAAACGTTGACGAATTAGCAGAAGCCCAAGGACTTGGTGCTGGTGAACTTTTGAGAAGAAATGCAGAAAATGTTGCTGCTCGATTAGAACGACTTGAAGCTCAAGTCGAGCAGATGCTAGATGGTTTGGATGATGCAGATGGTGCAGAGGATGTTCCTTTTGATGAACTTGTAGGCATGCAAGGCCCTGTTTTCCACTTGGTTGAGAACGCAATAACAGTTCTGGCCAGCAATGCTATATTCCTCATTGTTGTGATCTTCGTACCATTCTCATTGGGAAGGATTGTCCTGTACTATCTATCATGGTTCTTCTCTTCAGCCTCTAGTCCTATGCTGGCAAGAATGATGCCGTTTACGGAAACTGCTATTTCATTGGCTAATGATACATTGAAGAGTGCACTTAATGCCGTGAAGAACTTATCTGCTGACAGCCATAATGAAGGTGTCATTGGTCATGTCATTGAGGTGGTTACTCAATCATTGAAGATAAATGCCACTGGTCTTACTGTAATGCAGGCCTCTGGGAAGAGTAGTCTGATAAAAGGAACTGCTATTGGCTCATCCTATCTTTCTGATCTGACAACTCTTGCTGTGGGATATATGTTTATCTTTTGCCTTGTGTTTTTGTACATTGGATCATTGGCTTTACTGCGGTATGCTAGGGGAGAACGTTTCACCATTGGGAGGCTCTACGGTATAGCNACCATTTTAGAGGCTATCCCATCTCTATGCAGGCAATTCTTTGCTGGAATGAAGCATCTCATGACTATGGTC]
[+] EMBL CB661947 [ACTATATAAGACACTTGCGGGAACTTGGAGGGCATGATGCTGAGAGGGATGATGGGGGCCGTGAAAGGCATGGTGCACGAGCTGTCAGAAGGCTACCTGGTCCTAATAACAGGGTTCCTGCTGCAGATGGAAACGTTGACGAATTAGCAGAAGCCCAAGGACTTGGTGCTGGTGAACTTTTGAGAAGAAATGCAGAAAATGTTGCTGCTCGATTAGAACGACTTGAAGCTCAAGTCGAGCAGATGCTAGATGGTTTGGATGATGCAGATGGTGCAGAGGATGTTCCTTTTGATGAACTTGTAGGCATGCAAGGCCCTGTTTTCCACTTGGTTGAGAACGCAATAACAGTTCTGGCCAGCAATGCTATATTCCTCATTGTTGTGATCTTCGTACCATTCTCATTGGGAAGGATTGTCCTGTACTATCTATCATGGTTCTTCTCTTCAGCCTCTAGTCCTATGCTGGCAAGAATGATGCCGTTTACGGAAACTGCTATTTCATTGGCTAATGATACATTGAAGAGTGCACTTAATGCCGTGAAGAACTTATCTGCTGACAGCCATAATGAAGGTGTCATTGGTCATGTCATTGAGGTGGTTACTCAATCATTGAAGATAAATGCCACTGGTCTTACTGTAATGCAGGCCTCTGGGAAGAGTAGTCTGATAAAAGGAACTGCTATTGGCTCATCCTATCTTTCTGATCTGACAACTCTTGCTGTGGGATATATGTTTATCTTTTGCCTTGTGTTTTTGTACATTGGATCATTGGCTTTACTGCGGTATGCTAGGGGAGAACGTTTCACCATTG ]
[+] EMBL AU056554 [ TTGAGGTGGTTACNCAATCATTGAAGATAAATNCCACTGGTCTTACTGTAATGCAGGCCTCTGGGAAGAGTAGTCTGATAAAAGGAACNGCTATTGGCTCATCCTATCTTTCTGATCNGACAACNCTTGCTGTGGGATATATGTTTATCTTTTGCCTTGTGTTTTTGTACATTGGATCATTGGCTTTACTGCGGTATGCTAGGGGAGAACGTTTCACCATTGGGAGGCTCTACGGTATAGCNACCATTTTAGAGGCTATCCCATCTCTATGCAGGCAATTCTTTGCTGGAATGAAGCATCTCATGACTATGGTC]
consensusID : consensus_7984#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence
[TCCCCACCGCCTCCTCCGCCCCAACGCGGTCTCCCTCCCCCCCCCCTCCCCCGCGCGATCGCTCGCACGCACGGCCGCCGCCGCCGCCGCGCCCAGCCATGGCGGACGTCGCCGCGGACCGGCCTCCCGCGGCCGAGCAGGAGGAGGCGCGGCCGCCCTCATCCACCGCGGCGGTGGCGGAGGAGGACGAGGAGGAGGAGGAAGGGGACGTGTGCCGGATCTGCCGGAACCCGGGGGACGACGAGCACCCGCTCCGGTACCCGTGCGCCTGCAGCGGCAGCATCAAGTTCGTGCACCAGGACTGCCTCCTCCAGTGGCTCGACCACAGCAACTCCCGCCAGTGCGAGGTACGGAACCCTCGGTTCGCTTTTATGGGCCGCGGGGGCCTTGGGGTTTGTCTCGATTCGGCGGTGGAATCGATCGATTGGATGATAATCCGGTGCATTTGCTCGATAATTTCTGGTGAATTTTTGCGGTGTTGTATGTAGCTGGTGGTTGTAATAGGTCAGCATCACTTCGCTCGCGCTGGATAGGGGCAAGTGATAACAGTGATACCTTTTATGGGCGAGAGAGGTTTCTACGGCTCTAAGATGATATAATTTGTGCAATAGGGTTTGTGAACCGTACGCTGAGACATTGTTTTTATTTAGATTATTTTACAAGGCTGCTAGCTGTATTTATTTGATCTCGTGGCAACATTAGCTAGTTTCAGATATTTCTCTACAATCACATTTACAGATGTAAAGCTTAGTATGGACAAGGTTTTCTACCTGTGACTGCAAGAGATTGAAAACTAG]
[+] EMBL AK102470 [TCCCCACCGCCTCCTCCGCCCCAACGCGGTCTCCCTCCCCCCCCCCTCCCCCGCGCGATCGCTCGCACGCACGGCCGCCGCCGCCGCCGCGCCCAGCCATGGCGGACGTCGCCGCGGACCGGCCTCCCGCGGCCGAGCAGGAGGAGGCGCGGCCGCCCTCATCCACCGCGGCGGTGGCGGAGGAGGACGAGGAGGAGGAGGAAGGGGACGTGTGCCGGATCTGCCGGAACCCGGGGGACGACGAGCACCCGCTCCGGTACCCGTGCGCCTGCAGCGGCAGCATCAAGTTCGTGCACCAGGACTGCCTCCTCCAGTGGCTCGACCACAGCAACTCCCGCCAGTGCGAGGTACGGAACCCTCGGTTCGCTTTTATGGGCCGCGGGGGCCTTGGGGTTTGTCTCGATTCGGCGGTGGAATCGATCGATTGGATGATAATCCGGTGCATTTGCTCGATAATTTCTGGTGAATTTTTGCGGTGTTGTATGTAGCTGGTGGTTGTAATAGGTCAGCATCACTTCGCTCGCGCTGGATAGGGGCAAGTGATAACAGTGATACCTTTTATGGGCGAGAGAGGTTTCTACGGCTCTAAGATGATATAATTTGTGCAATAGGGTTTGTGAACCGTACGCTGAGACATTGTTTTTATTTAGATTATTTTACAAGGCTGCTAGCTGTATTTATTTGATCTCGTGGCAACATTAGCTAGTTTCAGATATTTCTCTACAATCACATTTACAGATGTAAAGCTTAGTATGGACAAGGTTTTCTACCTGTGACTGCAAGAGATTGAAAACTAG]
consensusID : consensus_7984#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 697 fasta sequence
[CCGCCCCTACGCGGTCTCCCTCCCCCCCCCCTCCCCCGCGCGATCGCTCGCACGCACGGCCGCCGCCGCCGCCGCGCCCAGCCATGGCGGACGTCGCCGCGGACCGGCCTCCCGCGGCCGAGCAGGAGGAGGCGCGGCCGCCCTCATCCACCGCGGCGGTGGCGGAGGAGGACGAGGAGGAGGAGGAAGGGGACGTGTGCCGGATCTGCCGGAACCCGGGGGACGACGAGCACCCGCTCCGGTACCCGTGCGCCTGCAGCGGCAGCATCAAGTTCGTGCACCAGGACTGCCTCCTCCAGTGGCTCGACCACAGCAACTCCCGCCAGTGCGAGGTTTGCAAACATGCATTCTCTTTCTCGCCCGTCTATGCTGACAATGCTCCGTCAAGACTCCCCTTCCAAGAACTTATTGTTGGTGTTGGGATGAAAGCGTGCCATGTGCTTCAGTTTGTCCTCCGGCTTGCCTTTGTTCTTTCAGTTTGGCTCATGATTATCCCCTTCATCACTTACTGGATATGGAGGTTAACATTCGTGAGAAGTCTTGGTGAAGCACAGAGGCTATTCTTGAGTCATATCAGCGCTCAGTTGATCCTAAGTGACTGTTTACATGGTTTTCTTCTCTCAGCTATTATTGTCCTTATATTTCTTGGAGCTACCTCTTTAACGGACTATATAAGACACTTGCGGGAACTTGGAGG]
[+] EMBL CB676751 [CCGCCCCTACGCGGTCTCCCTCCCCCCCCCCTCCCCCGCGCGATCGCTCGCACGCACGGCCGCCGCCGCCGCCGCGCCCAGCCATGGCGGACGTCGCCGCGGACCGGCCTCCCGCGGCCGAGCAGGAGGAGGCGCGGCCGCCCTCATCCACCGCGGCGGTGGCGGAGGAGGACGAGGAGGAGGAGGAAGGGGACGTGTGCCGGATCTGCCGGAACCCGGGGGACGACGAGCACCCGCTCCGGTACCCGTGCGCCTGCAGCGGCAGCATCAAGTTCGTGCACCAGGACTGCCTCCTCCAGTGGCTCGACCACAGCAACTCCCGCCAGTGCGAGGTTTGCAAACATGCATTCTCTTTCTCGCCCGTCTATGCTGACAATGCTCCGTCAAGACTCCCCTTCCAAGAACTTATTGTTGGTGTTGGGATGAAAGCGTGCCATGTGCTTCAGTTTGTCCTCCGGCTTGCCTTTGTTCTTTCAGTTTGGCTCATGATTATCCCCTTCATCACTTACTGGATATGGAGGTTAACATTCGTGAGAAGTCTTGGTGAAGCACAGAGGCTATTCTTGAGTCATATCAGCGCTCAGTTGATCCTAAGTGACTGTTTACATGGTTTTCTTCTCTCAGCTATTATTGTCCTTATATTTCTTGGAGCTACCTCTTTAACGGACTATATAAGACACTTGCGGGAACTTGGAGG]
[+] EMBL CB639583 [ CTCCCCCCCCCCTCCCCCGCGCGATCGCTCGCACGCACGGCCGCCGCCGCCGCCGCGCCCAGCCATGGCGGACGTCGCCGCGGACCGGCCTCCCGCGGCCGAGCAGGAGGAGGCGCGGCCGCCCTCATCCACCGCGGCGGTGGCGGAGGAGGACGAGGAGGAGGAGGAAGGGGACGTGTGCCGGATCTGCCGGAACCCGGGGGACGACGAGCACCCGCTCCGGTACCCGTGCGCCTGCAGCGGCAGCATCAAGTTCGTGCACCAGGACTGCCTCCTCCAGTGGCTCGACCACAGCAACTCCCGCCAGTGCGAGGTTTGCAAACATGCATTCTCTTTCTCGCCCGTCTATGCTGACAATGCTCCGTCAAGACTCCCCTTCCAAGAACTTATTGTTGGTGTTGGGATGAAAGCGTGCCATGTGCTTCAGTTTGTCCTCCGGCTTGCCTTTGTTCTTTCAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7984#1 -------------------------------------------------TCCCCACCGCC 11
consensus_7984#2 ------------------------------------------------------------
consensus_7984#0 ACTATATAAGACACTTGCGGGAACTTGGAGGGCATGATGCTGAGAGGGATGATGGGGGCC 60
consensus_7984#1 TCCTCCGCCCC--AACGCGGTCTCCCTCCCCCCCCCCTCCCCCGCGCGATCGCTCGCACG 69
consensus_7984#2 ----CCGCCCC--TACGCGGTCTCCCTCCCCCCCCCCTCCCCCGCGCGATCGCTCGCACG 54
consensus_7984#0 GTGAAAGGCATGGTGCACGAGCTGTCAGAAGGCTACCTGGTCCTAATAACAGGGTTCCTG 120
* * * ** ** * * *** ** * * * *
consensus_7984#1 C-ACGGCCGCCGCCGCCGCCGCGCCCAGCCATGGCGGACG--TCGCCGCGGACCGGCCTC 126
consensus_7984#2 C-ACGGCCGCCGCCGCCGCCGCGCCCAGCCATGGCGGACG--TCGCCGCGGACCGGCCTC 111
consensus_7984#0 CTGCAGATGGAAACGTTGACGAATTAGCAGAAGCCCAAGGACTTGGTGCTGGTGAACTTT 180
* * * * ** * ** * * * * * * * ** * * *
consensus_7984#1 CCGCGGCCGA-GCAGGAGGAGGCGCGGC-CGCCCTCATCCACC-GCGGCGGTGGCGGAGG 183
consensus_7984#2 CCGCGGCCGA-GCAGGAGGAGGCGCGGC-CGCCCTCATCCACC-GCGGCGGTGGCGGAGG 168
consensus_7984#0 TGAGAAGAAATGCAGAAAATGTTGCTGCTCGATTAGAACGACTTGAAGCTCAAGTCGAGC 240
* **** * * ** ** ** * * ** * ** * ***
consensus_7984#1 AGG-ACGAGGAGGA--GGAGGAAGGGGACGTGTGCCGGATCTGCCGGAACCCGGGGGACG 240
consensus_7984#2 AGG-ACGAGGAGGA--GGAGGAAGGGGACGTGTGCCGGATCTGCCGGAACCCGGGGGACG 225
consensus_7984#0 AGATGCTAGATGGTTTGGATGATGCAGATG-GTGCAGAGGATGTTCCTTTTGATGAACTT 299
** * ** ** *** ** * ** * **** * ** *
consensus_7984#1 ACGAGCACCC---GCTCCGGTACCCGTGCGCCTGCAGCGGCAGCATCAAGTTCGTGCACC 297
consensus_7984#2 ACGAGCACCC---GCTCCGGTACCCGTGCGCCTGCAGCGGCAGCATCAAGTTCGTGCACC 282
consensus_7984#0 GTAGGCATGCAAGGCCCTGTTTTCCACTTGGTTGAGAACGCAATAACAGTTCTGGCCAGC 359
*** * ** * * * ** * ** *** * ** * * ** *
consensus_7984#1 AGGACTGCCTCCTCCAGTGGCTCGACCACAGCA--ACTCCCGCCAGTGCGAG--GTACGG 353
consensus_7984#2 AGGACTGCCTCCTCCAGTGGCTCGACCACAGCA--ACTCCCGCCAGTGCGAG--GTTTGC 338
consensus_7984#0 AATGCTATATTCCTCATTGTTGTGATCTTCGTACCATTCTCATTGGGAAGGATTGTCCTG 419
* ** * * ** ** ** * * * * ** * * * **
consensus_7984#1 AACCCTCGGT-----TCGCTTTTATGGGCCGC-----GGGGGCCTTGGGGTTTGTCTCGA 403
consensus_7984#2 AAACATGCAT-----TCTCTTTC-TCGCCCGT-----CTATGCTGACAATGCTCCGTCAA 387
consensus_7984#0 TACTATCTATCATGGTTCTTCTCTTCAGCCTCTAGTCCTATGCTGGCAAGAATGATGCCG 479
* * * * * * * ** ** * *
consensus_7984#1 TTCGGCGGTGGAATCGATCGATTGGATGATAATCCGGTGCA-TTTGCTCGATAATTTCTG 462
consensus_7984#2 GACTCCCCTTCCAAGAACTTATTGT-TGGTGTTGGGATGAA-AGCGTGCCATGTGCTTCA 445
consensus_7984#0 TTTACGGAAACTGCTATTTCATTGGCTAATGATACATTGAAGAGTGCACTTAATGCCGTG 539
**** * * * ** * * *
consensus_7984#1 GTGAATTTTTGCGGTGTTGTATGTAGC-----TGGTGGTTGTAATAGGTCA-GCATCACT 516
consensus_7984#2 GTTTGTCCTCCGGCTTGCCTTTGTTCT-----TTCAGTTTGGCTCATGATT-ATCCCCTT 499
consensus_7984#0 AAGAACTTATCTGCTGACAGCCATAATGAAGGTGTCATTGGTCATGTCATTGAGGTGGTT 599
* * * * * * *
consensus_7984#1 TCGCTCGCGCTGGATAGGGGCA--AGTGATAACAGTG------ATACCTTTTA-TGGGCG 567
consensus_7984#2 CATCACTTACTGGATATGGA-G--GTTAACATTCGTG------AGAAGTCTTGGTGAAGC 550
consensus_7984#0 ACTCAATCATTGAAGATAAATGCCACTGGTCTTACTGTAATGCAGGCCTCTGGGAAGAGT 659
* ** * * * ** * * *
consensus_7984#1 AGAGAGGTTTCT---ACGGCTCTAAGATGATATAATTTGTGCAATAGGGTTTGTGAACCG 624
consensus_7984#2 ACAGAGGCT---------ATTCTTGAGTCATATCAGC-GCTCAGTTGATCCT---AAGTG 597
consensus_7984#0 AGTCTGATAAAAGGAACTGCTATTGGCTCATCCTATCTTTCTGATCTGACAACTCTTGCT 719
* * * * * ** * *
consensus_7984#1 TACGCTGAGACATTGTTTTTATTTAGATTATT-TTACAAGGCTGCTAGCTGTATTTATTT 683
consensus_7984#2 ACTGTTTACATGGTTTTCTTCTCTCAGCTATTATTGTCCTTATATTTCTTGGAGCTACCT 657
consensus_7984#0 GTGGGATATATGTTTATCTTTTGCCTTGTGTTTTTGTACATTGGATCATTGGCTTTACTG 779
* * * * * ** * * ** ** * ** **
consensus_7984#1 GA-----TCTCGTGGCAACATTA-GCTAGTTTCAGATATTTCTCTACAATCACATTTACA 737
consensus_7984#2 CT-----TTAACGGACTATATAA-GACACTTGCGGGAACTTGGAGG-------------- 697
consensus_7984#0 CGGTATGCTAGGGGAGAACGTTTCACCATTGGGAGGCTCTACGGTATAGCNACCATTTTA 839
* * * * * * *
consensus_7984#1 GATGTAAAGCTTAGTATGGACAAGGTTTTCTACCTGTGACTGCAAGAGATTGAAAACTAG 797
consensus_7984#2 ------------------------------------------------------------
consensus_7984#0 GAGGCTATCCCATCTCTATGCAGGCAATTCTTTGCTGGAATGAAGCATCTCATGACTATG 899
consensus_7984#1 ---
consensus_7984#2 ---
consensus_7984#0 GTC 902
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||