These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7984#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 902 fasta sequence [ACTATATAAGACACTTGCGGGAACTTGGAGGGCATGATGCTGAGAGGGATGATGGGGGCCGTGAAAGGCATGGTGCACGAGCTGTCAGAAGGCTACCTGGTCCTAATAACAGGGTTCCTGCTGCAGATGGAAACGTTGACGAATTAGCAGAAGCCCAAGGACTTGGTGCTGGTGAACTTTTGAGAAGAAATGCAGAAAATGTTGCTGCTCGATTAGAACGACTTGAAGCTCAAGTCGAGCAGATGCTAGATGGTTTGGATGATGCAGATGGTGCAGAGGATGTTCCTTTTGATGAACTTGTAGGCATGCAAGGCCCTGTTTTCCACTTGGTTGAGAACGCAATAACAGTTCTGGCCAGCAATGCTATATTCCTCATTGTTGTGATCTTCGTACCATTCTCATTGGGAAGGATTGTCCTGTACTATCTATCATGGTTCTTCTCTTCAGCCTCTAGTCCTATGCTGGCAAGAATGATGCCGTTTACGGAAACTGCTATTTCATTGGCTAATGATACATTGAAGAGTGCACTTAATGCCGTGAAGAACTTATCTGCTGACAGCCATAATGAAGGTGTCATTGGTCATGTCATTGAGGTGGTTACTCAATCATTGAAGATAAATGCCACTGGTCTTACTGTAATGCAGGCCTCTGGGAAGAGTAGTCTGATAAAAGGAACTGCTATTGGCTCATCCTATCTTTCTGATCTGACAACTCTTGCTGTGGGATATATGTTTATCTTTTGCCTTGTGTTTTTGTACATTGGATCATTGGCTTTACTGCGGTATGCTAGGGGAGAACGTTTCACCATTGGGAGGCTCTACGGTATAGCNACCATTTTAGAGGCTATCCCATCTCTATGCAGGCAATTCTTTGCTGGAATGAAGCATCTCATGACTATGGTC] [+] EMBL CB661947 [ACTATATAAGACACTTGCGGGAACTTGGAGGGCATGATGCTGAGAGGGATGATGGGGGCCGTGAAAGGCATGGTGCACGAGCTGTCAGAAGGCTACCTGGTCCTAATAACAGGGTTCCTGCTGCAGATGGAAACGTTGACGAATTAGCAGAAGCCCAAGGACTTGGTGCTGGTGAACTTTTGAGAAGAAATGCAGAAAATGTTGCTGCTCGATTAGAACGACTTGAAGCTCAAGTCGAGCAGATGCTAGATGGTTTGGATGATGCAGATGGTGCAGAGGATGTTCCTTTTGATGAACTTGTAGGCATGCAAGGCCCTGTTTTCCACTTGGTTGAGAACGCAATAACAGTTCTGGCCAGCAATGCTATATTCCTCATTGTTGTGATCTTCGTACCATTCTCATTGGGAAGGATTGTCCTGTACTATCTATCATGGTTCTTCTCTTCAGCCTCTAGTCCTATGCTGGCAAGAATGATGCCGTTTACGGAAACTGCTATTTCATTGGCTAATGATACATTGAAGAGTGCACTTAATGCCGTGAAGAACTTATCTGCTGACAGCCATAATGAAGGTGTCATTGGTCATGTCATTGAGGTGGTTACTCAATCATTGAAGATAAATGCCACTGGTCTTACTGTAATGCAGGCCTCTGGGAAGAGTAGTCTGATAAAAGGAACTGCTATTGGCTCATCCTATCTTTCTGATCTGACAACTCTTGCTGTGGGATATATGTTTATCTTTTGCCTTGTGTTTTTGTACATTGGATCATTGGCTTTACTGCGGTATGCTAGGGGAGAACGTTTCACCATTG ] [+] EMBL AU056554 [ TTGAGGTGGTTACNCAATCATTGAAGATAAATNCCACTGGTCTTACTGTAATGCAGGCCTCTGGGAAGAGTAGTCTGATAAAAGGAACNGCTATTGGCTCATCCTATCTTTCTGATCNGACAACNCTTGCTGTGGGATATATGTTTATCTTTTGCCTTGTGTTTTTGTACATTGGATCATTGGCTTTACTGCGGTATGCTAGGGGAGAACGTTTCACCATTGGGAGGCTCTACGGTATAGCNACCATTTTAGAGGCTATCCCATCTCTATGCAGGCAATTCTTTGCTGGAATGAAGCATCTCATGACTATGGTC] consensusID : consensus_7984#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence [TCCCCACCGCCTCCTCCGCCCCAACGCGGTCTCCCTCCCCCCCCCCTCCCCCGCGCGATCGCTCGCACGCACGGCCGCCGCCGCCGCCGCGCCCAGCCATGGCGGACGTCGCCGCGGACCGGCCTCCCGCGGCCGAGCAGGAGGAGGCGCGGCCGCCCTCATCCACCGCGGCGGTGGCGGAGGAGGACGAGGAGGAGGAGGAAGGGGACGTGTGCCGGATCTGCCGGAACCCGGGGGACGACGAGCACCCGCTCCGGTACCCGTGCGCCTGCAGCGGCAGCATCAAGTTCGTGCACCAGGACTGCCTCCTCCAGTGGCTCGACCACAGCAACTCCCGCCAGTGCGAGGTACGGAACCCTCGGTTCGCTTTTATGGGCCGCGGGGGCCTTGGGGTTTGTCTCGATTCGGCGGTGGAATCGATCGATTGGATGATAATCCGGTGCATTTGCTCGATAATTTCTGGTGAATTTTTGCGGTGTTGTATGTAGCTGGTGGTTGTAATAGGTCAGCATCACTTCGCTCGCGCTGGATAGGGGCAAGTGATAACAGTGATACCTTTTATGGGCGAGAGAGGTTTCTACGGCTCTAAGATGATATAATTTGTGCAATAGGGTTTGTGAACCGTACGCTGAGACATTGTTTTTATTTAGATTATTTTACAAGGCTGCTAGCTGTATTTATTTGATCTCGTGGCAACATTAGCTAGTTTCAGATATTTCTCTACAATCACATTTACAGATGTAAAGCTTAGTATGGACAAGGTTTTCTACCTGTGACTGCAAGAGATTGAAAACTAG] [+] EMBL AK102470 [TCCCCACCGCCTCCTCCGCCCCAACGCGGTCTCCCTCCCCCCCCCCTCCCCCGCGCGATCGCTCGCACGCACGGCCGCCGCCGCCGCCGCGCCCAGCCATGGCGGACGTCGCCGCGGACCGGCCTCCCGCGGCCGAGCAGGAGGAGGCGCGGCCGCCCTCATCCACCGCGGCGGTGGCGGAGGAGGACGAGGAGGAGGAGGAAGGGGACGTGTGCCGGATCTGCCGGAACCCGGGGGACGACGAGCACCCGCTCCGGTACCCGTGCGCCTGCAGCGGCAGCATCAAGTTCGTGCACCAGGACTGCCTCCTCCAGTGGCTCGACCACAGCAACTCCCGCCAGTGCGAGGTACGGAACCCTCGGTTCGCTTTTATGGGCCGCGGGGGCCTTGGGGTTTGTCTCGATTCGGCGGTGGAATCGATCGATTGGATGATAATCCGGTGCATTTGCTCGATAATTTCTGGTGAATTTTTGCGGTGTTGTATGTAGCTGGTGGTTGTAATAGGTCAGCATCACTTCGCTCGCGCTGGATAGGGGCAAGTGATAACAGTGATACCTTTTATGGGCGAGAGAGGTTTCTACGGCTCTAAGATGATATAATTTGTGCAATAGGGTTTGTGAACCGTACGCTGAGACATTGTTTTTATTTAGATTATTTTACAAGGCTGCTAGCTGTATTTATTTGATCTCGTGGCAACATTAGCTAGTTTCAGATATTTCTCTACAATCACATTTACAGATGTAAAGCTTAGTATGGACAAGGTTTTCTACCTGTGACTGCAAGAGATTGAAAACTAG] consensusID : consensus_7984#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 697 fasta sequence [CCGCCCCTACGCGGTCTCCCTCCCCCCCCCCTCCCCCGCGCGATCGCTCGCACGCACGGCCGCCGCCGCCGCCGCGCCCAGCCATGGCGGACGTCGCCGCGGACCGGCCTCCCGCGGCCGAGCAGGAGGAGGCGCGGCCGCCCTCATCCACCGCGGCGGTGGCGGAGGAGGACGAGGAGGAGGAGGAAGGGGACGTGTGCCGGATCTGCCGGAACCCGGGGGACGACGAGCACCCGCTCCGGTACCCGTGCGCCTGCAGCGGCAGCATCAAGTTCGTGCACCAGGACTGCCTCCTCCAGTGGCTCGACCACAGCAACTCCCGCCAGTGCGAGGTTTGCAAACATGCATTCTCTTTCTCGCCCGTCTATGCTGACAATGCTCCGTCAAGACTCCCCTTCCAAGAACTTATTGTTGGTGTTGGGATGAAAGCGTGCCATGTGCTTCAGTTTGTCCTCCGGCTTGCCTTTGTTCTTTCAGTTTGGCTCATGATTATCCCCTTCATCACTTACTGGATATGGAGGTTAACATTCGTGAGAAGTCTTGGTGAAGCACAGAGGCTATTCTTGAGTCATATCAGCGCTCAGTTGATCCTAAGTGACTGTTTACATGGTTTTCTTCTCTCAGCTATTATTGTCCTTATATTTCTTGGAGCTACCTCTTTAACGGACTATATAAGACACTTGCGGGAACTTGGAGG] [+] EMBL CB676751 [CCGCCCCTACGCGGTCTCCCTCCCCCCCCCCTCCCCCGCGCGATCGCTCGCACGCACGGCCGCCGCCGCCGCCGCGCCCAGCCATGGCGGACGTCGCCGCGGACCGGCCTCCCGCGGCCGAGCAGGAGGAGGCGCGGCCGCCCTCATCCACCGCGGCGGTGGCGGAGGAGGACGAGGAGGAGGAGGAAGGGGACGTGTGCCGGATCTGCCGGAACCCGGGGGACGACGAGCACCCGCTCCGGTACCCGTGCGCCTGCAGCGGCAGCATCAAGTTCGTGCACCAGGACTGCCTCCTCCAGTGGCTCGACCACAGCAACTCCCGCCAGTGCGAGGTTTGCAAACATGCATTCTCTTTCTCGCCCGTCTATGCTGACAATGCTCCGTCAAGACTCCCCTTCCAAGAACTTATTGTTGGTGTTGGGATGAAAGCGTGCCATGTGCTTCAGTTTGTCCTCCGGCTTGCCTTTGTTCTTTCAGTTTGGCTCATGATTATCCCCTTCATCACTTACTGGATATGGAGGTTAACATTCGTGAGAAGTCTTGGTGAAGCACAGAGGCTATTCTTGAGTCATATCAGCGCTCAGTTGATCCTAAGTGACTGTTTACATGGTTTTCTTCTCTCAGCTATTATTGTCCTTATATTTCTTGGAGCTACCTCTTTAACGGACTATATAAGACACTTGCGGGAACTTGGAGG] [+] EMBL CB639583 [ CTCCCCCCCCCCTCCCCCGCGCGATCGCTCGCACGCACGGCCGCCGCCGCCGCCGCGCCCAGCCATGGCGGACGTCGCCGCGGACCGGCCTCCCGCGGCCGAGCAGGAGGAGGCGCGGCCGCCCTCATCCACCGCGGCGGTGGCGGAGGAGGACGAGGAGGAGGAGGAAGGGGACGTGTGCCGGATCTGCCGGAACCCGGGGGACGACGAGCACCCGCTCCGGTACCCGTGCGCCTGCAGCGGCAGCATCAAGTTCGTGCACCAGGACTGCCTCCTCCAGTGGCTCGACCACAGCAACTCCCGCCAGTGCGAGGTTTGCAAACATGCATTCTCTTTCTCGCCCGTCTATGCTGACAATGCTCCGTCAAGACTCCCCTTCCAAGAACTTATTGTTGGTGTTGGGATGAAAGCGTGCCATGTGCTTCAGTTTGTCCTCCGGCTTGCCTTTGTTCTTTCAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7984#1 -------------------------------------------------TCCCCACCGCC 11 consensus_7984#2 ------------------------------------------------------------ consensus_7984#0 ACTATATAAGACACTTGCGGGAACTTGGAGGGCATGATGCTGAGAGGGATGATGGGGGCC 60 consensus_7984#1 TCCTCCGCCCC--AACGCGGTCTCCCTCCCCCCCCCCTCCCCCGCGCGATCGCTCGCACG 69 consensus_7984#2 ----CCGCCCC--TACGCGGTCTCCCTCCCCCCCCCCTCCCCCGCGCGATCGCTCGCACG 54 consensus_7984#0 GTGAAAGGCATGGTGCACGAGCTGTCAGAAGGCTACCTGGTCCTAATAACAGGGTTCCTG 120 * * * ** ** * * *** ** * * * * consensus_7984#1 C-ACGGCCGCCGCCGCCGCCGCGCCCAGCCATGGCGGACG--TCGCCGCGGACCGGCCTC 126 consensus_7984#2 C-ACGGCCGCCGCCGCCGCCGCGCCCAGCCATGGCGGACG--TCGCCGCGGACCGGCCTC 111 consensus_7984#0 CTGCAGATGGAAACGTTGACGAATTAGCAGAAGCCCAAGGACTTGGTGCTGGTGAACTTT 180 * * * * ** * ** * * * * * * * ** * * * consensus_7984#1 CCGCGGCCGA-GCAGGAGGAGGCGCGGC-CGCCCTCATCCACC-GCGGCGGTGGCGGAGG 183 consensus_7984#2 CCGCGGCCGA-GCAGGAGGAGGCGCGGC-CGCCCTCATCCACC-GCGGCGGTGGCGGAGG 168 consensus_7984#0 TGAGAAGAAATGCAGAAAATGTTGCTGCTCGATTAGAACGACTTGAAGCTCAAGTCGAGC 240 * **** * * ** ** ** * * ** * ** * *** consensus_7984#1 AGG-ACGAGGAGGA--GGAGGAAGGGGACGTGTGCCGGATCTGCCGGAACCCGGGGGACG 240 consensus_7984#2 AGG-ACGAGGAGGA--GGAGGAAGGGGACGTGTGCCGGATCTGCCGGAACCCGGGGGACG 225 consensus_7984#0 AGATGCTAGATGGTTTGGATGATGCAGATG-GTGCAGAGGATGTTCCTTTTGATGAACTT 299 ** * ** ** *** ** * ** * **** * ** * consensus_7984#1 ACGAGCACCC---GCTCCGGTACCCGTGCGCCTGCAGCGGCAGCATCAAGTTCGTGCACC 297 consensus_7984#2 ACGAGCACCC---GCTCCGGTACCCGTGCGCCTGCAGCGGCAGCATCAAGTTCGTGCACC 282 consensus_7984#0 GTAGGCATGCAAGGCCCTGTTTTCCACTTGGTTGAGAACGCAATAACAGTTCTGGCCAGC 359 *** * ** * * * ** * ** *** * ** * * ** * consensus_7984#1 AGGACTGCCTCCTCCAGTGGCTCGACCACAGCA--ACTCCCGCCAGTGCGAG--GTACGG 353 consensus_7984#2 AGGACTGCCTCCTCCAGTGGCTCGACCACAGCA--ACTCCCGCCAGTGCGAG--GTTTGC 338 consensus_7984#0 AATGCTATATTCCTCATTGTTGTGATCTTCGTACCATTCTCATTGGGAAGGATTGTCCTG 419 * ** * * ** ** ** * * * * ** * * * ** consensus_7984#1 AACCCTCGGT-----TCGCTTTTATGGGCCGC-----GGGGGCCTTGGGGTTTGTCTCGA 403 consensus_7984#2 AAACATGCAT-----TCTCTTTC-TCGCCCGT-----CTATGCTGACAATGCTCCGTCAA 387 consensus_7984#0 TACTATCTATCATGGTTCTTCTCTTCAGCCTCTAGTCCTATGCTGGCAAGAATGATGCCG 479 * * * * * * * ** ** * * consensus_7984#1 TTCGGCGGTGGAATCGATCGATTGGATGATAATCCGGTGCA-TTTGCTCGATAATTTCTG 462 consensus_7984#2 GACTCCCCTTCCAAGAACTTATTGT-TGGTGTTGGGATGAA-AGCGTGCCATGTGCTTCA 445 consensus_7984#0 TTTACGGAAACTGCTATTTCATTGGCTAATGATACATTGAAGAGTGCACTTAATGCCGTG 539 **** * * * ** * * * consensus_7984#1 GTGAATTTTTGCGGTGTTGTATGTAGC-----TGGTGGTTGTAATAGGTCA-GCATCACT 516 consensus_7984#2 GTTTGTCCTCCGGCTTGCCTTTGTTCT-----TTCAGTTTGGCTCATGATT-ATCCCCTT 499 consensus_7984#0 AAGAACTTATCTGCTGACAGCCATAATGAAGGTGTCATTGGTCATGTCATTGAGGTGGTT 599 * * * * * * * consensus_7984#1 TCGCTCGCGCTGGATAGGGGCA--AGTGATAACAGTG------ATACCTTTTA-TGGGCG 567 consensus_7984#2 CATCACTTACTGGATATGGA-G--GTTAACATTCGTG------AGAAGTCTTGGTGAAGC 550 consensus_7984#0 ACTCAATCATTGAAGATAAATGCCACTGGTCTTACTGTAATGCAGGCCTCTGGGAAGAGT 659 * ** * * * ** * * * consensus_7984#1 AGAGAGGTTTCT---ACGGCTCTAAGATGATATAATTTGTGCAATAGGGTTTGTGAACCG 624 consensus_7984#2 ACAGAGGCT---------ATTCTTGAGTCATATCAGC-GCTCAGTTGATCCT---AAGTG 597 consensus_7984#0 AGTCTGATAAAAGGAACTGCTATTGGCTCATCCTATCTTTCTGATCTGACAACTCTTGCT 719 * * * * * ** * * consensus_7984#1 TACGCTGAGACATTGTTTTTATTTAGATTATT-TTACAAGGCTGCTAGCTGTATTTATTT 683 consensus_7984#2 ACTGTTTACATGGTTTTCTTCTCTCAGCTATTATTGTCCTTATATTTCTTGGAGCTACCT 657 consensus_7984#0 GTGGGATATATGTTTATCTTTTGCCTTGTGTTTTTGTACATTGGATCATTGGCTTTACTG 779 * * * * * ** * * ** ** * ** ** consensus_7984#1 GA-----TCTCGTGGCAACATTA-GCTAGTTTCAGATATTTCTCTACAATCACATTTACA 737 consensus_7984#2 CT-----TTAACGGACTATATAA-GACACTTGCGGGAACTTGGAGG-------------- 697 consensus_7984#0 CGGTATGCTAGGGGAGAACGTTTCACCATTGGGAGGCTCTACGGTATAGCNACCATTTTA 839 * * * * * * * consensus_7984#1 GATGTAAAGCTTAGTATGGACAAGGTTTTCTACCTGTGACTGCAAGAGATTGAAAACTAG 797 consensus_7984#2 ------------------------------------------------------------ consensus_7984#0 GAGGCTATCCCATCTCTATGCAGGCAATTCTTTGCTGGAATGAAGCATCTCATGACTATG 899 consensus_7984#1 --- consensus_7984#2 --- consensus_7984#0 GTC 902 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||