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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7987#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 962 fasta sequence
[TCGTTTCGTCGTGCACGAGCCGGAGCAGGAGACGAAGGGTTTCAGCCATGGTTAGCCTCCGCCTCCCCCTCATACTCCTCTCCCTCCTGGCCATCTCCTTCTCATGCAGCGCCGCGCCGCCGCCGGTGTACGACACGGAGGGCCACGAGCTGAGCGCCGACGGGAGCTACTACGTCCTCCCGGCTAGCCCCGGCCACGGAGGGGGCCTCACGATGGCGCCCCGCGTGCTCCCCTGCCCGCTCCTCGTGGCGCAGGAGACGGACGAGCGCCGCAAGGGGTTCCCCGTGCGCTTCACCCCGTGGGGCGGCGCCGCGGCGCCGGAGGACAGGACCATCCGCGTCTCGACCGACGTCCGCATCCGCTTCAACGCCGCGACGATCTGCGTGCAGTCCACCGAGTGGCATGTCGGCGACGAGCCGCTCACGGGGGCGCGGCGCGTGGTGACGGGGCCGTTGATCGGGCCGAGCCCGAGCGGGCGGGAGAACGCGTTCCGCGTGGAGAAGTACGGCGGTGGGTACAAGCTGGTGTCGTGCAGGGACTCGTGCCAGGACCTGGGCGTGTCAAGGGACGGCGCGCGGGCGTGGCTGGGCGCGAGCCAGCCGCCTCACGTCGTGGTCTTCAAGAAGGCCAGGCCAAGCCCACCAGAGTAAACGAGGGGAGGGGAGGGGGGGGGGGTCACTCATGCGTTGCGTGGTGCGGTGGTGCCTCTGTAGCGTGTATAGGTAGTAGGGTGCGTGCGTGCGTGC-GCATGTGCTGGTTGAATAATGTGTGAAGAGGCTAGCAGGTATTGCTCCGTGGTTCTGTTCTCATGGTCGTGTCATGTCTGTTAGTCGTGATAACTCGTGAGCA-CTGAGCAAGTGAGCAGGACTGCCTCTGGCTGTCTGGCCCAGCCGGACTTGTTAAGTCCAAATGGAATGAACGAATTGTGCGGGATAATGGATTTTCATCTAAAAAAAAAAAAA]
[+] EMBL AK106723 [TCGTTTCGTCGTGCACGAGCCGGAGCAGGAGACGAAGGGTTTCAGCCATGGTTAGCCTCCGCCTCCCCCTCATACTCCTCTCCCTCCTGGCCATCTCCTTCTCATGCAGCGCCGCGCCGCCGCCGGTGTACGACACGGAGGGCCACGAGCTGAGCGCCGACGGGAGCTACTACGTCCTCCCGGCTAGCCCCGGCCACGGAGGGGGCCTCACGATGGCGCCCCGCGTGCTCCCCTGCCCGCTCCTCGTGGCGCAGGAGACGGACGAGCGCCGCAAGGGGTTCCCCGTGCGCTTCACCCCGTGGGGCGGCGCCGCGGCGCCGGAGGACAGGACCATCCGCGTCTCGACCGACGTCCGCATCCGCTTCAACGCCGCGACGATCTGCGTGCAGTCCACCGAGTGGCATGTCGGCGACGAGCCGCTCACGGGGGCGCGGCGCGTGGTGACGGGGCCGTTGATCGGGCCGAGCCCGAGCGGGCGGGAGAACGCGTTCCGCGTGGAGAAGTACGGCGGTGGGTACAAGCTGGTGTCGTGCAGGGACTCGTGCCAGGACCTGGGCGTGTCAAGGGACGGCGCGCGGGCGTGGCTGGGCGCGAGCCAGCCGCCTCACGTCGTGGTCTTCAAGAAGGCCAGGCCAAGCCCACCAGAGTAAACGAGGGGAGGGGAGGGGGGGGGGGTCACTCATGCGTTGCGTGGTGCGGTGGTGCCTCTGTAGCGTGTATAGGTAGTAGGGTGCGTGCGTGCGTGC GCATGTGCTGGTTGAATAATGTGTGAAGAGGCTAGCAGGTATTGCTCCGTG ]
[+] EMBL AY166458 [ GCACGAGCCGGAGCAGGAGACGAAGGGTTTCAGCCATGGTTAGCCTCCGCCTCCCCCTCATACTCCTCTCCCTCCTGGCCATCTCCTTCTCATGCAGCGCCGCGCCGCCGCCGGTGTACGACACGGAGGGCCACGAGCTGAGCGCCGACGGGAGCTACTACGTCCTCCCGGCTAGCCCCGGCCACGGAGGGGGCCTCACGATGGCGCCCCGCGTGCTCCCCTGCCCGCTCCTCGTGGCGCAGGAGACGGACGAGCGCCGCAAGGGGTTCCCCGTGCGCTTCACCCCGTGGGGCGGCGCCGCGGCGCCGGAGGACAGGACCATCCGCGTCTCGACCGACGTCCGCATCCGCTTCAACGCCGCGACGATCTGCGTGCAGTCCACCGAGTGGCATGTCGGCGACGAGCCGCTCACGGGGGCGCGGCGCGTGGTGACGGGGCCGTTGATCGGGCCGAGCCCGAGCGGGCGGGAGAACGCGTTCCGCGTGGAGAAGTACGGCGGTGGGTACAAGCTGGTGTCGTGCAGGGACTCGTGCCAGGACCTGGGCGTGTCAAGGGACGGCGCGCGGGCGTGGCTGGGCGCGAGCCAGCCGCCTCACGTCGTGGTCTTCAAGAAGGCCAGGCCAAGCCCACCAGAGTAAACGAGGGGAGGGGAGGGGGGGGGGGTCACTCATGCGTTGCGTGGTGCGGTGGTGCCTCTGTAGCGTGTATAGGTAGTAGGGTGCGTGCGTGCGTGC GCATGTGCTGGTTGAATAATGTGTGAAGAGGCTAGCAGGTATTGCTCCGTGGTTCTGTTCTCATGGTCGTGTCATGTCTGTTAGTCGTGATAACTCGTGAGCA CTGAGCAAGTGAGCAGGACTGCCTCTGGCTGTCTGGCCCAGCCGGACTTGTTAAGTCCAAATGGAATGAACGAATTGTGCGGGATA ]
[+] EMBL AU174476 [ GTAGCGTGTATAGGTAGTAGGGTGCGTGCGTGCGTGC GCATGTGCTGGTTGAATAATGTGTGAAGAGGCTAGCAGGTATTGCTCCGTGGTTCTGTTCTCATGGTCGTGTCATGTCTGTTAGTCGTGATAACTCGTGAGCA CTGAGCAAGTGAGCAGGACTGCCTCTGGCTGTCTGGCCCAGCCGGACTTGTTAAGTCCAAATGGAATGAACGAATTGTGCGGGAT ATGGATTTTCATCTAAAAAAAAAAAAA]
[+] EMBL BI795374 [ GCGTGTATAGGTAGTAGGGTGCGTGCGTGCGTGCAGCATGTGCTGGTTGAATAATGTGTGAAGAGGCTAGCAGGTATTGCTCCGTGGTTCTGTTCTCATGGTCGTGTCATGTCTGTTAGTCGTGATAACTCGTGAGCACCTGAGCAAGTGAGCAGGACTGCCTCTGGCTGTCTGGCCCAGCCGGACTTGTTAAGTCCAAATGGAATGAACGAATTGTGCGGGATTATGGATTT ]
consensusID : consensus_7987#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 160 fasta sequence
[GTNCTGGNTGNACAATGTGTTGAAAAGGCTANCAGGTATTGCTCCGNGGTTCTGNTCTCATGGTCGTGTCATTGTCTGTTAGCCGTGATACCTCGTGAGCNCTGNGCAAGTGAGNAGGACTGCCTCTGGCTGTCTGGCCCAGCCGGNCTTGTTCAGTCCA]
[+] EMBL D42857 [GTNCTGGNTGNACAATGTGTTGAAAAGGCTANCAGGTATTGCTCCGNGGTTCTGNTCTCATGGTCGTGTCATTGTCTGTTAGCCGTGATACCTCGTGAGCNCTGNGCAAGTGAGNAGGACTGCCTCTGGCTGTCTGGCCCAGCCGGNCTTGTTCAGTCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7987#0 TCGTTTCGTCGTGCACGAGCCGGAGCAGGAGACGAAGGGTTTCAGCCATGGTTAGCCTCC 60
consensus_7987#1 ------------------------------------------------------------
consensus_7987#0 GCCTCCCCCTCATACTCCTCTCCCTCCTGGCCATCTCCTTCTCATGCAGCGCCGCGCCGC 120
consensus_7987#1 ------------------------------------------------------------
consensus_7987#0 CGCCGGTGTACGACACGGAGGGCCACGAGCTGAGCGCCGACGGGAGCTACTACGTCCTCC 180
consensus_7987#1 ------------------------------------------------------------
consensus_7987#0 CGGCTAGCCCCGGCCACGGAGGGGGCCTCACGATGGCGCCCCGCGTGCTCCCCTGCCCGC 240
consensus_7987#1 ------------------------------------------------------------
consensus_7987#0 TCCTCGTGGCGCAGGAGACGGACGAGCGCCGCAAGGGGTTCCCCGTGCGCTTCACCCCGT 300
consensus_7987#1 ------------------------------------------------------------
consensus_7987#0 GGGGCGGCGCCGCGGCGCCGGAGGACAGGACCATCCGCGTCTCGACCGACGTCCGCATCC 360
consensus_7987#1 ------------------------------------------------------------
consensus_7987#0 GCTTCAACGCCGCGACGATCTGCGTGCAGTCCACCGAGTGGCATGTCGGCGACGAGCCGC 420
consensus_7987#1 ------------------------------------------------------------
consensus_7987#0 TCACGGGGGCGCGGCGCGTGGTGACGGGGCCGTTGATCGGGCCGAGCCCGAGCGGGCGGG 480
consensus_7987#1 ------------------------------------------------------------
consensus_7987#0 AGAACGCGTTCCGCGTGGAGAAGTACGGCGGTGGGTACAAGCTGGTGTCGTGCAGGGACT 540
consensus_7987#1 ------------------------------------------------------------
consensus_7987#0 CGTGCCAGGACCTGGGCGTGTCAAGGGACGGCGCGCGGGCGTGGCTGGGCGCGAGCCAGC 600
consensus_7987#1 ------------------------------------------------------------
consensus_7987#0 CGCCTCACGTCGTGGTCTTCAAGAAGGCCAGGCCAAGCCCACCAGAGTAAACGAGGGGAG 660
consensus_7987#1 ------------------------------------------------------------
consensus_7987#0 GGGAGGGGGGGGGGGTCACTCATGCGTTGCGTGGTGCGGTGGTGCCTCTGTAGCGTGTAT 720
consensus_7987#1 ------------------------------------------------------------
consensus_7987#0 AGGTAGTAGGGTGCGTGCGTGCGTGCGCATGTGCTGGTTGAATAATGTGT-GAAGAGGCT 779
consensus_7987#1 ------------------------------GTNCTGGNTGNACAATGTGTTGAAAAGGCT 30
** **** ** * ******* *** *****
consensus_7987#0 AGCAGGTATTGCTCCGTGGTTCTGTTCTCATGGTCGTGTCAT-GTCTGTTAGTCGTGATA 838
consensus_7987#1 ANCAGGTATTGCTCCGNGGTTCTGNTCTCATGGTCGTGTCATTGTCTGTTAGCCGTGATA 90
* ************** ******* ***************** ********* *******
consensus_7987#0 ACTCGTGAGCACTGAGCAAGTGAGCAGGACTGCCTCTGGCTGTCTGGCCCAGCCGGACTT 898
consensus_7987#1 CCTCGTGAGCNCTGNGCAAGTGAGNAGGACTGCCTCTGGCTGTCTGGCCCAGCCGGNCTT 150
********* *** ********* ******************************* ***
consensus_7987#0 GTTAAGTCCAAATGGAATGAACGAATTGTGCGGGATAATGGATTTTCATCTAAAAAAAAA 958
consensus_7987#1 GTTCAGTCCA-------------------------------------------------- 160
*** ******
consensus_7987#0 AAAA 962
consensus_7987#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||