cluster # 7999

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Oryza sativa
cluster # 7999 cluster # 7999 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7999#0 length = 706 sequences # 4

consensus_7999#1 length = 272 sequences # 1

consensusID : consensus_7999#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 706
fasta sequence

                              [TTTTTTTATTTGGAACGGAAGCAGAAGATTTTCAATAATTACCAATGTGGTTTTCAGTTTACATGTCGTGAAGTGACATTAACGGCCACTGAATTGATAGAGCCACATAATAGCACAATTGCGGATCCACCAAAGTGAGATACACGGTTTTTAATGTGCTGTAGTGACCATAAAGCATAAATGGCTACCCTGAAGTCTGCAGGTAGCAACCAAATTTGAAATGCACAGGTAAATGCATAGTTTCATATGGATACTCAAGAGCACACACCCTTGCAAGGAGCGTCCTTGCAGCGGCAAACAGGCCTCCCTGAAAGTTCCCATCCATTAAATCCACGTTCAAGGACCATGATGTTCTTTACATCTGAATCTTCATCAGCCTCTGACAAATAGTCCAGATACATTTGCGCACAAGATGGGCCACGCACCTTGCTGAGGGCACAGTGGGAGACGAGGGTTTCCTTGCCCTTGGTGGCCTGGGCCAGCTCCGGCAGCCGCTCCCCGAAGCTGTCGCTGGCGTAATGATGCGAGCCGGCGATGTGCGCGTCGTAGATCCTCTCTTCGTCCCTGACATCGACGACGGCGATCCGGGGGTCCCGGAGCATGGGTACGAGCTGCGCCGCGGAAACGTAGGAGACGCCCCTCGCCATCGCCGCCGCCGCCGGCCGTGTGAGCGATGGCACTCTGTGTTTGATGGGCCTTTCTACTC]

[+] EMBL CF290991             [TTTTTTTATTTGGAACGGAAGCAGAAGATTTTCAATAATTACCAATGTGGTTTTCAGTTTACATGTCGTGAAGTGACATTAACGGCCACTGAATTGATAGAGCCACATAATAGCACAATTGCGGATCCACCAAAGTGAGATACACGGTTTTTAATGTGCTGTAGTGACCATAAAGCATAAATGGCTACCCTGAAGTCTGCAGGTAGCAACCAAATTTGAAATGCACAGGTAAATGCATAGTTTCATATGGATACTCAAGAGCACACACCCTTGCAAGGAGCGTCCTTGCAGCGGCAAACAGGCCTCCCTGAAAGTTCCCATCCATTAAATCCACGTTCAAGGACCATGATGTTCTTTACATCTGAATCTTCATCAGCCTCTGACAAATAGTCCAGATACATTTGCGCACAAGATGGGCCACGCACCTTGCTGAGGGCACAGTGGGAGACGAGGGTTTCCTTGCCCTTGGTGGCCTGGGCCAGCTCCGGCAGCCGCTCCCCGAAGCTGTCGCTGGCGTAATGATGCGAGCCGGCGATGTGCGCGTCGTAGATCCTCTCTTCGTCCCTGACATCGACGACGGCGATCCGGGGGTCCCGGAGCATGGGTACGAGCTGCGCCGCGGAAACGTAGGAGACGCCCCTCGCCATCGCCGCCGCCGCCGGCCGTGTGAGCGATGGCACTCTGTGTTTGATGGGCCT        ]
[-] EMBL AK102520             [                     CAGAAGATTTTCAATAATTACCAATGTGGTTTTCAGTTTACATGTCGTGAAGTGACATTAACGGCCACTGAATTGATAGAGCCACATAATAGCACAATTGCGGATCCACCAAAGTGAGATACACGGTTTTTAATGTGCTGTAGTGACCATAAAGCATAAATGGCTACCCTGAAGTCTGCAGGTAGCAACCAAATTTGAAATGCACAGGTAAATGCATAGTTTCATATGGATACTCAAGAGCACACACCCTTGCAAGGAGCGTCCTTGCAGCGGCAAACAGGCCTCCCTGAAAGTTCCCATCCATTAAATCCACGTTCAAGGACCATGATGTTCTTTACATCTGAATCTTCATCAGCCTCTGACAAATAGTCCAGATACATTTGCGCACAAGATGGGCCACGCACCTTGCTGAGGGCACAGTGGAAGACGAGGGTTTCCTTGCCCTTGGTGGCCTGGGCCAGCTCCGGCAGCCGCTCCCCGAAGCTGTCGCTGGCGTAATGATGCGAGCCGGCGATGTGCGCGTCGTAGATCCTCTCTTCGTCCCTGACATCGACGACGGCGATCCGGGGGTCCCGGAGCATGGGGACGAGCTGCGCCGCGGAAACGTAGGAGACGCCCCTCGCCATCGCCGCCGCCGCCGGCCGTGTGAGCGATGGCACTCTGTGTTT                 ]
[-] EMBL CF290990             [                                                                                                       CACATAATAGCACAATTGCGGATCCACCAAAGTGAGATACACGGTTTTTAATGTGCTGTAGTGACCATAAAGCATAAATGGCTACCCTGAAGTCTGCAGGTAGCAACCAAATTTGAAATGCACAGGTAAATGCATAGTTTCATATGGATACTCAAGAGCACACACCCTTGCAAGGAGCGTCCTTGCAGCGGCAAACAGGCCTCCCTGAAAGTTCCCATCCATTAAATCCACGTTCAAGGACCATGATGTTCTTTACATCTGAATCTTCATCAGCCTCTGACAAATAGTCCAGATACATTTGCGCACAAGATGGGCCACGCACCTTGCTGAGGGCACAGTGGGAGACGAGGGTTTCCTTGCCCTTGGTGGCCTGGGCCAGCTCCGGCAGCCGCTCCCCGAAGCTGTCGCTGGCGTAATGATGCGAGCCGGCGATGTGCGCGTCGTAGATCCTCTCTTCGTCCCTGACATCGACGACGGCGATCCGGGGGTCCCGGAGCATGGGTACGAGCTGCGCCGCGGAAACGTAGGAGACGCCCCTCGCCATCGCCGCCGCCGCCGGCCGTGTGAGCGA GGCACTCTG GTTT ATGGGCCTTTCTACTC]
[-] EMBL CF293892             [                                                                                                                                                                                                        AGGTAGCAACCAAATTTGAAATGCACAGGTAAATGCATAGTTTCATATGGATACTCAAGAGCACACACCCTTGCAAGGAGCGTCCTTGCAGCGGCAAACAGGCCTCCCTGAAAGTTCCCATCCATTAAATCCACGTTCAAGGACCATGATGTTCTTTACATCTGAATCTTCATCAGCCTCTGACAAATAGTCCAGATACATTTGCGCACAAGATGGGCCACGCACCTTGCTGAGGGCACAGTGGAAGACGAGGGTTTCCTTGCCCTTGGTGGCCTGGGCCAGCTCCGGCAGCCGCTCCCCGAAGCTGTCGCTGGCGTAATGATGCGAGCCGGCGATGTGCGCGTCGTAGATCCTCTCTTCGTCCCTGACATCGACGACGGCGATCCGGGGGTCCCGGAGCATGGGGACGAGCTGCGCCGCGGAAACGTAGGAGACGCCCCTCGCCATCGCCGCCGCCGCCGGCCGTGTGAGCGATGGCACTCTGTGTTTGATGG            ]




>consensus_7999#0
TTTTTTTATTTGGAACGGAAGCAGAAGATTTTCAATAATTACCAATGTGGTTTTCAGTTT
ACATGTCGTGAAGTGACATTAACGGCCACTGAATTGATAGAGCCACATAATAGCACAATT
GCGGATCCACCAAAGTGAGATACACGGTTTTTAATGTGCTGTAGTGACCATAAAGCATAA
ATGGCTACCCTGAAGTCTGCAGGTAGCAACCAAATTTGAAATGCACAGGTAAATGCATAG
TTTCATATGGATACTCAAGAGCACACACCCTTGCAAGGAGCGTCCTTGCAGCGGCAAACA
GGCCTCCCTGAAAGTTCCCATCCATTAAATCCACGTTCAAGGACCATGATGTTCTTTACA
TCTGAATCTTCATCAGCCTCTGACAAATAGTCCAGATACATTTGCGCACAAGATGGGCCA
CGCACCTTGCTGAGGGCACAGTGGGAGACGAGGGTTTCCTTGCCCTTGGTGGCCTGGGCC
AGCTCCGGCAGCCGCTCCCCGAAGCTGTCGCTGGCGTAATGATGCGAGCCGGCGATGTGC
GCGTCGTAGATCCTCTCTTCGTCCCTGACATCGACGACGGCGATCCGGGGGTCCCGGAGC
ATGGGTACGAGCTGCGCCGCGGAAACGTAGGAGACGCCCCTCGCCATCGCCGCCGCCGCC
GGCCGTGTGAGCGATGGCACTCTGTGTTTGATGGGCCTTTCTACTC

consensusID : consensus_7999#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [TTTTTTTTTTTTTTTTTGGAACGGAAGCAGAAGATTTTCAATAATTACCAATGGGGTTTTCAGTTTACATGTCGGGAAGTGACATTAACGGCCACTGAATTGATAGAGCCACATAATAGCACAATTGCGGATCCACCAAAGGGAGATACACGGTTTTTAATGGGCTGTAGTGACCATAAAGCATAAATGGCTACCCTGAAGTCTGCAGGTAGCAACCAAATTTGAAACGCACAGGTAAATGCATAGTTTCATATCCCCTTGTCTCGTCCTCT]

[+] EMBL CA761617             [TTTTTTTTTTTTTTTTTGGAACGGAAGCAGAAGATTTTCAATAATTACCAATGGGGTTTTCAGTTTACATGTCGGGAAGTGACATTAACGGCCACTGAATTGATAGAGCCACATAATAGCACAATTGCGGATCCACCAAAGGGAGATACACGGTTTTTAATGGGCTGTAGTGACCATAAAGCATAAATGGCTACCCTGAAGTCTGCAGGTAGCAACCAAATTTGAAACGCACAGGTAAATGCATAGTTTCATATCCCCTTGTCTCGTCCTCT]




>consensus_7999#1
TTTTTTTTTTTTTTTTTGGAACGGAAGCAGAAGATTTTCAATAATTACCAATGGGGTTTT
CAGTTTACATGTCGGGAAGTGACATTAACGGCCACTGAATTGATAGAGCCACATAATAGC
ACAATTGCGGATCCACCAAAGGGAGATACACGGTTTTTAATGGGCTGTAGTGACCATAAA
GCATAAATGGCTACCCTGAAGTCTGCAGGTAGCAACCAAATTTGAAACGCACAGGTAAAT
GCATAGTTTCATATCCCCTTGTCTCGTCCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7999#0      ------TTTTTTTATTTGGAACGGAAGCAGAAGATTTTCAATAATTACCAATGTGGTTTT 54
consensus_7999#1      TTTTTTTTTTTTTTTTTGGAACGGAAGCAGAAGATTTTCAATAATTACCAATGGGGTTTT 60
                            ******* *************************************** ******

consensus_7999#0      CAGTTTACATGTCGTGAAGTGACATTAACGGCCACTGAATTGATAGAGCCACATAATAGC 114
consensus_7999#1      CAGTTTACATGTCGGGAAGTGACATTAACGGCCACTGAATTGATAGAGCCACATAATAGC 120
                      ************** *********************************************

consensus_7999#0      ACAATTGCGGATCCACCAAAGTGAGATACACGGTTTTTAATGTGCTGTAGTGACCATAAA 174
consensus_7999#1      ACAATTGCGGATCCACCAAAGGGAGATACACGGTTTTTAATGGGCTGTAGTGACCATAAA 180
                      ********************* ******************** *****************

consensus_7999#0      GCATAAATGGCTACCCTGAAGTCTGCAGGTAGCAACCAAATTTGAAATGCACAGGTAAAT 234
consensus_7999#1      GCATAAATGGCTACCCTGAAGTCTGCAGGTAGCAACCAAATTTGAAACGCACAGGTAAAT 240
                      *********************************************** ************

consensus_7999#0      GCATAGTTTCATATGGATACTCAAGAGCACACACCCTTGCAAGGAGCGTCCTTGCAGCGG 294
consensus_7999#1      GCATAGTTTCATAT-----CCCCTTGTCTCGTCCTCT----------------------- 272
                      **************     * *     * *   * **                       

consensus_7999#0      CAAACAGGCCTCCCTGAAAGTTCCCATCCATTAAATCCACGTTCAAGGACCATGATGTTC 354
consensus_7999#1      ------------------------------------------------------------
                                                                                  

consensus_7999#0      TTTACATCTGAATCTTCATCAGCCTCTGACAAATAGTCCAGATACATTTGCGCACAAGAT 414
consensus_7999#1      ------------------------------------------------------------
                                                                                  

consensus_7999#0      GGGCCACGCACCTTGCTGAGGGCACAGTGGGAGACGAGGGTTTCCTTGCCCTTGGTGGCC 474
consensus_7999#1      ------------------------------------------------------------
                                                                                  

consensus_7999#0      TGGGCCAGCTCCGGCAGCCGCTCCCCGAAGCTGTCGCTGGCGTAATGATGCGAGCCGGCG 534
consensus_7999#1      ------------------------------------------------------------
                                                                                  

consensus_7999#0      ATGTGCGCGTCGTAGATCCTCTCTTCGTCCCTGACATCGACGACGGCGATCCGGGGGTCC 594
consensus_7999#1      ------------------------------------------------------------
                                                                                  

consensus_7999#0      CGGAGCATGGGTACGAGCTGCGCCGCGGAAACGTAGGAGACGCCCCTCGCCATCGCCGCC 654
consensus_7999#1      ------------------------------------------------------------
                                                                                  

consensus_7999#0      GCCGCCGGCCGTGTGAGCGATGGCACTCTGTGTTTGATGGGCCTTTCTACTC 706
consensus_7999#1      ----------------------------------------------------