cluster # 8012

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Oryza sativa
cluster # 8012 cluster # 8012 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8012#0 length = 466 sequences # 3

consensus_8012#1 length = 442 sequences # 1
consensus_8012#2 length = 378 sequences # 1

consensusID : consensus_8012#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 466
fasta sequence

                              [GTGGAATTGAAGAAGATGGGGACGATGAGGAGGGTGGTGAAGGAGAAGAGGTTCTGGGTCGCCTCCTTCCTCCTCGTCTGGGCTGCCGCGCTCCAGGGGCACATGATGTGGATGCAGCGCCAGGACGCCTTCAAGCAAAAGTTCCCCTCCAACTCCAACCACGACGACGACCTCGCCGGCGCCGACTCCTAGCTAGGCAGCTACTCCTTCCATTCCATCCCATCTAGGGCTTACTGTACTACCCCAGTAGTGGAGCTCCTCCCCTCTACAGTAGTACTTAC-TTTCTTCTTCATCACTTGATGGGTAGTAGTACTCCGTAGTAGCTAATGATCGTTTGAAAACG-AGTACTACGTG-TTTGATGAATCGCCTGNCTGCCTAATTGAATTGCTTCTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OS1321608            [GTGGAATTGAAGAAGATGGGGACGATGAGGAGGGTGGTGAAGGAGAAGAGGTTCTGGGTCGCCTCCTTCCTCCTCGTCTGGGCTGCCGCGCTCCAGGGGCACATNATGTGGATGCAGCGCCAGGACGCCTTCAAGCAAAANTTCCCCTCCAACTCCAACCACGACGACGACCTCGCCGGCGCCGACTCCTAGCTAGGCAGCTACTCCTTCCATTCCATCCCATCTAGGGCTTACTGTACTACCCCAGTAGTGGAGCTCCTNCCCTCTACAGTAGTACTTACTTTTCTTCTTCATCACTTGATGGGTAGTAGTACTNCGTAGTAGCTAATGATCGTTTGAAAAAG AGTACTACGTGNTTTGA                                                                                                           ]
[+] EMBL AU030099             [                                               GAGGTTCTGGGTCGCCTCCTTCCTCCTCGTCTGGGCTGC  CGCTCCAGGGGCACATGATGTGGATGCAGCGCCAGGACGCCTTCAAGCAAAAGTTCCCCTCCAACTCCAACCACGACGACGACCTCGCCGGCGCCGACTCCTAGCTAGGCAGCTACTCCTTCCATTCCATCCCATCTAGGGCTTACTGTACTACCCCAGTAGTGGAGCTCCTCCCCTCTACAGTAGTACTTAC TTTCTTCTTCATCACTTGATGGGTAGTAGTACTCCGTAGTAGCTAATGATCGTTTGAAAACGAAGTACTACGTG TTTGATGAATCGCCTGNCTGCCT                                                                                         ]
[+] EMBL AU164471             [                                                                  TTCCTCCTCGTCTGGGCTGCCGCGCTCCAGGGGCACATGATGTGGATGCAGCGCCAGGACGCCTTCAAGCAAAAGTTCCCCTCCAACTCCAACCACGACGACGACCTCGCCGGCGCCGACTCCTAGCTAGGCAGCTACTCCTTCCATTCCATCCCATCTAGGGCTTACTGTACTACCCCAGTAGTGGAGCTCCTCCCCTCTACAGTAGTACTTAC TTTCTTCTTCATCACTTGATGGGTAGTAGTACTCCGTAGTAGCTAATGATCG TTGAAAACG AGTACTACGTG TTTGATGAATCGCCTGCCTGCCTAATTGAATTGCTTCTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8012#0
GTGGAATTGAAGAAGATGGGGACGATGAGGAGGGTGGTGAAGGAGAAGAGGTTCTGGGTC
GCCTCCTTCCTCCTCGTCTGGGCTGCCGCGCTCCAGGGGCACATGATGTGGATGCAGCGC
CAGGACGCCTTCAAGCAAAAGTTCCCCTCCAACTCCAACCACGACGACGACCTCGCCGGC
GCCGACTCCTAGCTAGGCAGCTACTCCTTCCATTCCATCCCATCTAGGGCTTACTGTACT
ACCCCAGTAGTGGAGCTCCTCCCCTCTACAGTAGTACTTACTTTCTTCTTCATCACTTGA
TGGGTAGTAGTACTCCGTAGTAGCTAATGATCGTTTGAAAACGAGTACTACGTGTTTGAT
GAATCGCCTGNCTGCCTAATTGAATTGCTTCTTACAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_8012#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [AAGTTGGTGGAATTGAAGAAGATGGGGACGATGAGGAGGGTGGTGAAGGAGAAGAGCTTCTGGTCAGCCTCCTTCCTCCTCGTCTGGGCTGCCGCGCTCCAGGGGCACATGATGTGGATGCAGCGCCAGGACGCCTTCAAGCATAAAGGTTCCCACGTCCAAAACGTCCAACCACGACGACGACCGTCGCCGGCGCCGACTCCCTAGCGTAGGCAAGCGTACGTCCGTGTCACAAGTTCCAATCCCAGTCTAGGGCCCTTACTGTACTACACCCAGTAGTGGAGCGTCCGTCCCCGTCTACAGGTAGGTACGTTACTTTCGTTCGTTCAGTCACAGTTGATGGGTAGTAGTACTCCGTAGTAGCTAATGATCGTTGAAAACGAGTACTACGTGTTTGATGAATCGCCTGCCTGCCTAATTGAATTGCTTCTTACATAAAAAA]

[+] EMBL BI803756             [AAGTTGGTGGAATTGAAGAAGATGGGGACGATGAGGAGGGTGGTGAAGGAGAAGAGCTTCTGGTCAGCCTCCTTCCTCCTCGTCTGGGCTGCCGCGCTCCAGGGGCACATGATGTGGATGCAGCGCCAGGACGCCTTCAAGCATAAAGGTTCCCACGTCCAAAACGTCCAACCACGACGACGACCGTCGCCGGCGCCGACTCCCTAGCGTAGGCAAGCGTACGTCCGTGTCACAAGTTCCAATCCCAGTCTAGGGCCCTTACTGTACTACACCCAGTAGTGGAGCGTCCGTCCCCGTCTACAGGTAGGTACGTTACTTTCGTTCGTTCAGTCACAGTTGATGGGTAGTAGTACTCCGTAGTAGCTAATGATCGTTGAAAACGAGTACTACGTGTTTGATGAATCGCCTGCCTGCCTAATTGAATTGCTTCTTACATAAAAAA]




>consensus_8012#1
AAGTTGGTGGAATTGAAGAAGATGGGGACGATGAGGAGGGTGGTGAAGGAGAAGAGCTTC
TGGTCAGCCTCCTTCCTCCTCGTCTGGGCTGCCGCGCTCCAGGGGCACATGATGTGGATG
CAGCGCCAGGACGCCTTCAAGCATAAAGGTTCCCACGTCCAAAACGTCCAACCACGACGA
CGACCGTCGCCGGCGCCGACTCCCTAGCGTAGGCAAGCGTACGTCCGTGTCACAAGTTCC
AATCCCAGTCTAGGGCCCTTACTGTACTACACCCAGTAGTGGAGCGTCCGTCCCCGTCTA
CAGGTAGGTACGTTACTTTCGTTCGTTCAGTCACAGTTGATGGGTAGTAGTACTCCGTAG
TAGCTAATGATCGTTGAAAACGAGTACTACGTGTTTGATGAATCGCCTGCCTGCCTAATT
GAATTGCTTCTTACATAAAAAA

consensusID : consensus_8012#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 378
fasta sequence

                              [CGGAAGGAGAAGNGGTTCTGGGTCGCCTCCTTCCTCCTCGTCTGGGCTGCCGCTCCAGGGGCACATGATGTGGATGCAGCGCCAGGACGCCTTCAAGCAAAAGTTCCCCTCCAACTCCAACCACGACGACGACCTCGCCGGCGCCGACTCCTAGCTAGGCAGCTACTCCTTCCATTCCATCCCATCTAGGGCTTACTGTACTNCCCCAGTNGTGGNGCTCCTCCCCTCTACAGTAGTACTTACTTTCTTCTTCATCACTTGATGGGTAGTAGTACTCCGTAGTAGNTNATGATCGTTGAAAACGAGTACTACGTGTTTGCTNNTTTTNNTGNNTNNNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU030100             [CGGAAGGAGAAGNGGTTCTGGGTCGCCTCCTTCCTCCTCGTCTGGGCTGCCGCTCCAGGGGCACATGATGTGGATGCAGCGCCAGGACGCCTTCAAGCAAAAGTTCCCCTCCAACTCCAACCACGACGACGACCTCGCCGGCGCCGACTCCTAGCTAGGCAGCTACTCCTTCCATTCCATCCCATCTAGGGCTTACTGTACTNCCCCAGTNGTGGNGCTCCTCCCCTCTACAGTAGTACTTACTTTCTTCTTCATCACTTGATGGGTAGTAGTACTCCGTAGTAGNTNATGATCGTTGAAAACGAGTACTACGTGTTTGCTNNTTTTNNTGNNTNNNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8012#2
CGGAAGGAGAAGNGGTTCTGGGTCGCCTCCTTCCTCCTCGTCTGGGCTGCCGCTCCAGGG
GCACATGATGTGGATGCAGCGCCAGGACGCCTTCAAGCAAAAGTTCCCCTCCAACTCCAA
CCACGACGACGACCTCGCCGGCGCCGACTCCTAGCTAGGCAGCTACTCCTTCCATTCCAT
CCCATCTAGGGCTTACTGTACTNCCCCAGTNGTGGNGCTCCTCCCCTCTACAGTAGTACT
TACTTTCTTCTTCATCACTTGATGGGTAGTAGTACTCCGTAGTAGNTNATGATCGTTGAA
AACGAGTACTACGTGTTTGCTNNTTTTNNTGNNTNNNTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8012#0      ------GTGGAATTGAAGAAGATGGGGACGATGAGGAGGGTGGTGAAGGAGAAGAGGTTC 54
consensus_8012#2      ------------------------------------------CGGAAGGAGAAGNGGTTC 18
consensus_8012#1      AAGTTGGTGGAATTGAAGAAGATGGGGACGATGAGGAGGGTGGTGAAGGAGAAGAGCTTC 60
                                                                  ********** * ***

consensus_8012#0      TGGGTCGCCTCCTTCCTCCTCGTCTGGGCTGCCGCGCTCCAGGGGCACATGATGTGGATG 114
consensus_8012#2      TGGGTCGCCTCCTTCCTCCTCGTCTGGGCTGCCG--CTCCAGGGGCACATGATGTGGATG 76
consensus_8012#1      TGGTCAGCCTCCTTCCTCCTCGTCTGGGCTGCCGCGCTCCAGGGGCACATGATGTGGATG 120
                      ***   ****************************  ************************

consensus_8012#0      CAGCGCCAGGACGCCTTCAAGCA-AAAGTTCCCC---TCCAAC---TCCAACCACGACGA 167
consensus_8012#2      CAGCGCCAGGACGCCTTCAAGCA-AAAGTTCCCC---TCCAAC---TCCAACCACGACGA 129
consensus_8012#1      CAGCGCCAGGACGCCTTCAAGCATAAAGGTTCCCACGTCCAAAACGTCCAACCACGACGA 180
                      *********************** **** * ***   *****    **************

consensus_8012#0      CGACC-TCGCCGGCGCCGACTCC-TAGC-TAGGCAGCTACTCCTTCC--------ATTCC 216
consensus_8012#2      CGACC-TCGCCGGCGCCGACTCC-TAGC-TAGGCAGCTACTCCTTCC--------ATTCC 178
consensus_8012#1      CGACCGTCGCCGGCGCCGACTCCCTAGCGTAGGCAAGCGTACGTCCGTGTCACAAGTTCC 240
                      ***** ***************** **** ******      * * *          ****

consensus_8012#0      A-TCCCA-TCTAGGGC--TTACTGTACTAC-CCCAGTAGTGGAGCTCCT---CCCCTCTA 268
consensus_8012#2      A-TCCCA-TCTAGGGC--TTACTGTACTNC-CCCAGTNGTGGNGCTCCT---CCCCTCTA 230
consensus_8012#1      AATCCCAGTCTAGGGCCCTTACTGTACTACACCCAGTAGTGGAGCGTCCGTCCCCGTCTA 300
                      * ***** ********  ********** * ****** **** **  *    *** ****

consensus_8012#0      CAGT--AGTAC-TTACTTTCTTC--TTCA-TCAC--TTGATGGGTAGTAGTACTCCGTAG 320
consensus_8012#2      CAGT--AGTAC-TTACTTTCTTC--TTCA-TCAC--TTGATGGGTAGTAGTACTCCGTAG 282
consensus_8012#1      CAGGTAGGTACGTTACTTTCGTTCGTTCAGTCACAGTTGATGGGTAGTAGTACTCCGTAG 360
                      ***    **** ******** *   **** ****  ************************

consensus_8012#0      TAGCTAATGATCGTTTGAAAACGAGTACTACGTGTTTGATGAATCGCCTGNCTGCCTAAT 380
consensus_8012#2      TAGNTNATGATCGTT-GAAAACGAGTACTACGTGTTTGCTNNTTTTNNTGNNTNNNTAA- 340
consensus_8012#1      TAGCTAATGATCGTT-GAAAACGAGTACTACGTGTTTGATGAATCGCCTGCCTGCCTAAT 419
                      *** * ********* ********************** *   *    **  *   *** 

consensus_8012#0      TGAATTGCTTCTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 440
consensus_8012#2      ---------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------- 378
consensus_8012#1      TGAATTGCTTCTTACATAAAAAA------------------------------------- 442
                                     * ******                                     

consensus_8012#0      AAAAAAAAAAAAAAAAAAAAAAAAAA 466
consensus_8012#2      --------------------------
consensus_8012#1      --------------------------