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Oryza sativa
cluster # 8019 cluster # 8019       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8019#0 length = 1411 sequences # 5  

consensusID : consensus_8019#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1411
fasta sequence
                              [CGCTCCCGAGCAAGAGAAGCGGAAGAAGGAAGTCCACCGCGCGAAACGCCGGAGATGCCGCCGGGGGCCTCGCCGGCGGCGTCGGCGGAGGCCTGGACGTGGGAGAACGCCGCCGCAGGAGCGGCCGCCGGCTTCGCCACCGTCGCGACCCTCCACCCGCTCGACGTCGTCCGCACCCGTTTCCAAGTGAGCGGCGGGAGGGGATGCTACGACTTGCCGCCGTACAGGAACACTGCGCACGCTGTGTACACCATCGCGCGATCTGAGGGTCTGAGAGGACTTTATGCGGGATTTTATCCAGCAGTTCTTGGATCAACTGTTTCCTGGGGGCTATATTTCTTTTTTTATAACAGAGCTAAACAAAGATACTTACAAGGGAAAGATGATCAGCTCCGTCCAGTTCACCATCTTGTCTCAGCTGCAGAAGCAGGTGCTTTGGTTTGCCTATTCACAAACCCTATATGGCTGGTTAAAACAAGACTGCAATTACAAACGCCTAGTCATCATACTTCACGATATTCTGGATTTTCTGATGCTTTGAGAACTATTCTGAAAGAGGAGGGATGGCTTGCGCTTTACAGAGGGATTGGACCTGGGCTTTTGCTGGTTACTCATGGAGCGATACAGTTCACGGCCTATGAGGAACTTCGCAAAGCTTTGATATTTGCCAAAAGTAGACAGACAAGAACAGACAACAGAAGCTGCGATGATTCCTTGAATTCCATTGATTATGCGGCACTTGGGGCTGGTTCGAAAGTAACTGCCATTCTGCTTACTTATCCTTACCAGGTCATCCGAGCACGCTTGCAGCAACGACCTGGTAGTGATGGCACTCCAAAGTACAAAGATAGCTGGCATGTAGTGAAAGAAACTGCAAGGCATGAAGGTGTCCGTGGATTTTACAGGGGCATCACATCGAATCTGCTCAAAAACCTTCCGGCAGCTTCCCTTACATTTGTGGTGTATGAAAATGTGATCAAATTATTCAAAGCAGCAAAGGAGAAGACATAATATTTCCAATTGTTCCCAGGAGAAACAAGAAAAGAATGTGCGTCATGAAATACTGAG-CCAATCCCACCTTCTGGAGTTCGAAGCAACATTCATCTTCATTGCTGCGTTATTGTCTCATCCACTTAACATGCACAGGCTAGAGAAATGTTACATGAGAGAAGTTGCGATTGACATAATCGCCGTAGATTTTGTTTTGAGGAACATAGATCAGTTTTTGTTTCTTCCTGAAGTAGTT-CTTCCTGTAGTC-CAGTTGAATACAGTTTTTGGATCCTT-AT-GTAATCGGGAGCCTTTACAGGTCTACCCATGTGCATGTGTACATCCACCATGTCTACGGCTGCTCAACTGAGTTACAACAGTTGTATAAA-ACTGAAGTAATGCCAGACAAAATTACACCAAAAAA]

[+] EMBL AK072060             [CGCTCCCGAGCAAGAGAAGCGGAAGAAGGAAGTCCACCGCGCGAAACGCCGGAGATGCCGCCGGGGGCCTCGCCGGCGGCGTCGGCGGAGGCCTGGACGTGGGAGAACGCCGCCGCAGGAGCGGCCGCCGGCTTCGCCACCGTCGCGACCCTCCACCCGCTCGACGTCGTCCGCACCCGTTTCCAAGTGAGCGGCGGGAGGGGATGCTACGACTTGCCGCCGTACAGGAACACTGCGCACGCTGTGTACACCATCGCGCGATCTGAGGGTCTGAGAGGACTTTATGCGGGATTTTATCCAGCAGTTCTTGGATCAACTGTTTCCTGGGGGCTATATTTCTTTTTTTATAACAGAGCTAAACAAAGATACTTACAAGGGAAAGATGATCAGCTCCGTCCAGTTCACCATCTTGTCTCAGCTGCAGAAGCAGGTGCTTTGGTTTGCCTATTCACAAACCCTATATGGCTGGTTAAAACAAGACTGCAATTACAAACGCCTAGTCATCATACTTCACGATATTCTGGATTTTCTGATGCTTTGAGAACTATTCTGAAAGAGGAGGGATGGCTTGCGCTTTACAGAGGGATTGGACCTGGGCTTTTGCTGGTTACTCATGGAGCGATACAGTTCACGGCCTATGAGGAACTTCGCAAAGCTTTGATATTTGCCAAAAGTAGACAGACAAGAACAGACAACAGAAGCTGCGATGATTCCTTGAATTCCATTGATTATGCGGCACTTGGGGCTGGTTCGAAAGTAACTGCCATTCTGCTTACTTATCCTTACCAGGTCATCCGAGCACGCTTGCAGCAACGACCTGGTAGTGATGGCACTCCAAAGTACAAAGATAGCTGGCATGTAGTGAAAGAAACTGCAAGGCATGAAGGTGTCCGTGGATTTTACAGGGGCATCACATCGAATCTGCTCAAAAACCTTCCGGCAGCTTCCCTTACATTTGTGGTGTATGAAAATGTGATCAAATTATTCAAAGCAGCAAAGGAGAAGACATAATATTTCCAATTGTTCCCAGGAGAAACAAGAAAAGAATGTGCGTCATGAAATACTGAG CCAATCCCACCTTCTGGAGTTCGAAGCAACATTCATCTTCATTGCTGCGTTATTGTCTCATCCACTTAACATGCACAGGCTAGAGAAATGTTACATGAGAGAAGTTGCGATTGACATAATCGCCGTAGATTTTGTTTTGAGGAACATAGATCAGTTTTTGTTTCTTCCTGAAGTAGTT CTTCCTGTAGTC CAGTTGAATACAGTTTTTGGATCCTT AT GTAATCGGGAGCCTTTACAGGTCTACCCATGTGCATGTGTACATCCACCATGTCTACGGCTGCTCAACTGAGTTACAACAGTTGTATAAA ACTGAAGTAATGCCAGACA                ]
[+] EMBL AK120533             [                AAGCGGAAGAAGGAAGTCCACCGCGCGAAACGCCGGAGATGCCGCCGGGGGCCTCGCCGGCGGCGTCGGCGGAGGCCTGGACGTGGGAGAACGCCGCCGCAGGAGCGGCCGCCGGCTTCGCCACCGTCGCGACCCTCCACCCGCTCGACGTCGTCCGCACCCGTTTCCAAGTGAGCGGCGGGAGGGGATGCTACGACTTGCCGCCGTACAGGAACACTGCGCACGCTGTGTACACCATCGCGCGATCTGAGGGTCTGAGAGGACTTTATGCGGGATTTTATCCAGCAGTTCTTGGATCAACTGTTTCCTGGGGGCTATATTTCTTTTTTTATAACAGAGCTAAACAAAGATACTTACAAGGGAAAGATGATCAGCTCCGTCCAGTTCACCATCTTGTCTCAGCTGCAGAAGCAGGTGCTTTGGTTTGCCTATTCACAAACCCTATATGGCTGGTTAAAACAAGACTGCAATTACAAACGCCTAGTCATCATACTTCACGATATTCTGGATTTTCTGATGCTTTGAGAACTATTCTGAAAGAGGAGGGATGGCTTGCGCTTTACAGAGGGATTGGACCTGGGCTTTTGCTGGTTACTCATGGAGCGATACAGTTCACGGCCTATGAGGAACTTCGCAAAGCTTTGATATTTGCCAAAAGTAGACAGACAAGAACAGACAACAGAAGCTGCGATGATTCCTTGAATTCCATTGATTATGCGGCACTTGGGGCTGGTTCGAAAGTAACTGCCATTCTGCTTACTTATCCTTACCAGGTCATCCGAGCACGCTTGCAGCAACGACCTGGTAGTGATGGCACTCCAAAGTACAAAGATAGCTGGCATGTAGTGAAAGAAACTGCAAGGCATGAAGGTGTCCGTGGATTTTACAGGGGCATCACATCGAATCTGCTCAAAAACCTTCCGGCAGCTTCCCTTACATTTGTGGTGTATGAAAATGTGATCAAATTATTCAAAGCAGCAAAGGAGAAGACATAATATTTCCAATTGTTCCCAGGAGAAACAAGAAAAGAATGTGCGTCATGAAATACTGAG CCAATCCCACCTTCTGGAGTTCGAAGCAACATTCATCTTCATTGCTGCGTTATTGTCTCATCCACTTAACATGCACAGGCTAGAGAAATGTTACATGAGAGAAGTTGCGATTGACATAATCGCCGTAGATTTTGTTTTGAGGAACATAGATCAGTTTTTGTTTCTTCCTGAAGTAGTT CTTCCTGTAGTC CAGTTGAATACAGTTTTTGGATCCTT AT GTAATCGGGAGCCTTTACAGGTCTACCCATGTGCATGTGTACATCCACCATGTCTACGGCTGCTCAACTGAGTTACAACAGTTGTATAAA ACTGAAGTAATGCCAGACAAAATTAC         ]
[+] EMBL CA764770             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      aAGGGGCATCACATCGAATCTGCTCAAAAACCTTCCGGCAGCTTCCCTTACATTTGTGGTGTATGAAAATGTGATCAAATTATTCAAAGCAGCAAAGGAGAAGACATAATATTTCCAATTGTTCCCAGGAGAAACAAGAAAAGAATGTGCGTCATGAAATACTGAG CCAATCCCACCTTCTGGAGTTCGAAGCAACATTCATCTTCATTGCTGCGTTATTGTCTCATCCACTTAGCATGCACAGGCTAGAGAAATGTTACATGAGAGAAGTTGCGATTGACATAATCGCCGTAGATTTTGTTTTGAGGAACATAGATCAGTTTTTGTTTCTTCCTGAAGTAGTT CTTCCTGTAGTC CAGTTGAATACAGTTTTTGGATCCTT AT GTAATCGGGAGCCTTTACAGGTCTACCCATGTGCATGTGTACATCCACCATGTCTACGGCTGCTCAACTGAGTTACAACAGTTGTATAAA ACTGAAGTAATGCCAGACA                ]
[+] EMBL AA750829             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGGATCACAT GAATCTGCTCAAAAACCTTCCGGCAGCTTCCCTTACATTTGTGGTGTATGAAAATGTGATCAAATTATTCAAAGCAGCAAAGGAGAAGACATAATATTTCCAATTGTTCCCAGGAGAAACAAGAAAAGAATGTGCGTCATGAAATACTGAGCCCAATCCCACCTTC                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BQ906416             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGTAGTTGCTTCCTGTAGTCACAGTTGAATACAGTTTTTGGATCCTTGATGGTAATCGGGAGCCTTTACAGGTCTACCCATGTGCATGTGTACATCCACCATGTCTACGGCTGCTCAACTGAGTTACAACAGTTGTATAAACCCTGNAGTAATGCCAGACAAAATTACACCAAAAAA]


>consensus_8019#0 CGCTCCCGAGCAAGAGAAGCGGAAGAAGGAAGTCCACCGCGCGAAACGCCGGAGATGCCG CCGGGGGCCTCGCCGGCGGCGTCGGCGGAGGCCTGGACGTGGGAGAACGCCGCCGCAGGA GCGGCCGCCGGCTTCGCCACCGTCGCGACCCTCCACCCGCTCGACGTCGTCCGCACCCGT TTCCAAGTGAGCGGCGGGAGGGGATGCTACGACTTGCCGCCGTACAGGAACACTGCGCAC GCTGTGTACACCATCGCGCGATCTGAGGGTCTGAGAGGACTTTATGCGGGATTTTATCCA GCAGTTCTTGGATCAACTGTTTCCTGGGGGCTATATTTCTTTTTTTATAACAGAGCTAAA CAAAGATACTTACAAGGGAAAGATGATCAGCTCCGTCCAGTTCACCATCTTGTCTCAGCT GCAGAAGCAGGTGCTTTGGTTTGCCTATTCACAAACCCTATATGGCTGGTTAAAACAAGA CTGCAATTACAAACGCCTAGTCATCATACTTCACGATATTCTGGATTTTCTGATGCTTTG AGAACTATTCTGAAAGAGGAGGGATGGCTTGCGCTTTACAGAGGGATTGGACCTGGGCTT TTGCTGGTTACTCATGGAGCGATACAGTTCACGGCCTATGAGGAACTTCGCAAAGCTTTG ATATTTGCCAAAAGTAGACAGACAAGAACAGACAACAGAAGCTGCGATGATTCCTTGAAT TCCATTGATTATGCGGCACTTGGGGCTGGTTCGAAAGTAACTGCCATTCTGCTTACTTAT CCTTACCAGGTCATCCGAGCACGCTTGCAGCAACGACCTGGTAGTGATGGCACTCCAAAG TACAAAGATAGCTGGCATGTAGTGAAAGAAACTGCAAGGCATGAAGGTGTCCGTGGATTT TACAGGGGCATCACATCGAATCTGCTCAAAAACCTTCCGGCAGCTTCCCTTACATTTGTG GTGTATGAAAATGTGATCAAATTATTCAAAGCAGCAAAGGAGAAGACATAATATTTCCAA TTGTTCCCAGGAGAAACAAGAAAAGAATGTGCGTCATGAAATACTGAGCCAATCCCACCT TCTGGAGTTCGAAGCAACATTCATCTTCATTGCTGCGTTATTGTCTCATCCACTTAACAT GCACAGGCTAGAGAAATGTTACATGAGAGAAGTTGCGATTGACATAATCGCCGTAGATTT TGTTTTGAGGAACATAGATCAGTTTTTGTTTCTTCCTGAAGTAGTTCTTCCTGTAGTCCA GTTGAATACAGTTTTTGGATCCTTATGTAATCGGGAGCCTTTACAGGTCTACCCATGTGC ATGTGTACATCCACCATGTCTACGGCTGCTCAACTGAGTTACAACAGTTGTATAAAACTG AAGTAATGCCAGACAAAATTACACCAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)