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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8033#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1997 fasta sequence
[CGCGTTTCGGCTGGCCCACGACACCGCCGACGCGCGACGAACGCCGCCGCGCCGCCGCCCCCAAACCCCCAAACTGCTCCGGCGATCGTCGAACTGGCCACGCCGCCCACGCCAGTTCGCGCTCACCTGCCCAGATAGTAAACTATTTGGGTTGGGAATTTGATTCATATGGTGGCAGCATTGGGTTATTTGTATATGATACCAAGCCCATTCAATTGAAATGCTCCGCCTTATGGTTAAGGAGACTATATGATGTTGAGTCCTTATAAGTTTATTGGACTTCAAGGAAGTGTTACCAGCTGTCATGAGGGTCAATCCTGCGCTCTTCCTGCCTTTGATGGCCGAATATGCAGCACCCACATGGGCCATACTAATTTCAGGGTTCTTCATGCTGCTTTCTGTTTCCCTCTCTATGTACTTGATATTCCAGCACCTTTCAGCATACAACAATCCAGAGGAACAGAAATTTGTTCTCGGTGTTATCTTGATGGTCCCTTGCTATGCAGTTGAGTCGTATGTTTCATTGGTAAATCCTGACACTAGCGTGTACTGTGGCATCCTGCGTGACGCCTATGAAGCATTTGCTATGTATTGCTTTGGAAGATATATTACTGCTTGTTTAGGTGGTGAAGAAAGGACAATTGCATTTTTGAAGAGGGAGGGTGGCGGAGATTCTGGGGAACCTCTTTTGCATGGTGCTTCTGAAAAAGGGATCATACACCATCACTTCCCTGTGAATTACATATTGAAACCATGGAGAATGGGTGTGAGGTTTTACCAGATTATCAAATTTGGTATATTTCAATATGTGATTATAAAGACCCTCACAGCTAGCCTATGCCTGATTCTTCAACCTTTTGGTGCATATTGTGATGGAGAATTCAATTTGAGATGCGGATACCCATACTTTGCCGCTGTCCTTAACTTCAGTCAATATTGGGCCCTATACTGTTTGGTGGAGTGGTACACGGCTACTAAGGACGAATTGGCACATATAAAGCCATTGGCAAAATTTCTTTCGTTCAAATCTATAGTATTTTTAACTTGGTGGCAGGGTATTATGATTGCTATCATGTATTCTTTGGGCTTGGTTAGAAGTCCGTTG-GCACAGAGCTTGGAGTTAAAGTCAAGCATTCAA-GATTTCAT-CATTT-GTATAGAGATGGGTATTGCTTCAGTTGTTCACCTATATGTGTTCCCTGCAAAGCCCTATTCGCTATTAGGTAATCATCGTTCACCTGAAAACATTTCAGTGCTAGGGGACTATGCCGCCACTGACCCTGTGGACCCTGATGAGATAAAAGATATTAGTCGGCCTACCAAATTGAGGCTTCCACAGTTGGAACCAGATGAGATAATTGTGACAAATGTTAAAGAGAGTGTTCGAGACTTTGTAATTGGCAGTGGAGAATATGTGATAAAAGATCTCAAATTCACGATGAAGCAAGCAGTGCGA-CCAGTCGGGAAGCGCTTTGAGAAATTAATGAAGAAGAAGGGCAAGTTCGGGCAAAGCCGTGATGACAATTGGGTAAGTACCTCCACGCTACAGAGAGCAATCCATGGGATCGATGATCCTCTCATATGCGGGAGCTCTAGTGACAGTGGGATCGGTAGAGGAAAACGGCACCGCAGGGACGTAAGCTCAGCTGGTGTTGTGGACAGTTGGGAAGGCAGCGACCAGACATCAGATGGGTATGTCATACGGGGACGCCGCTGGGAAATCAAGAAATCATGATATTCTTTTGTACAGGAGCTACGGAATACAAGCTGGGTTGCTGACTCGCTGGTAAATTTTGGTGCTAGCGTACAGCTCCCGTAGAT-T-GCTTAGCTACTTGTGTGATTGATTGTTTGATACTGTACATGGTTTCTCGTTTTCTATCTATAGGTGCGGTCAGAGTATTGTAAGTGCAGAATTCCACAAATTGTGCCATGCTTCAAGGGGCCAAGTGTAATTGAGTTCCTTTACAGAAG-TGCAAGGTATTGTACCAGAACACAAAAAA]
[+] EMBL AK073148 [CGCGTTTCGGCTGGCCCACGACACCGCCGACGCGCGACGAACGCCGCCGCGCCGCCGCCCCCAAACCCCCAAACTGCTCCGGCGATCGTCGAACTGGCCACGCCGCCCACGCCAGTTCGCGCTCACCTGCCCAGATAGTAAACTATTTGGGTTGGGAATTTGATTCATATGGTGGCAGCATTGGGTTATTTGTATATGATACCAAGCCCATTCAATTGAAATGCTCCGCCTTATGGTTAAGGAGACTATATGATGTTGAGTCCTTATAAGTTTATTGGACTTCAAGGAAGTGTTACCAGCTGTCATGAGGGTCAATCCTGCGCTCTTCCTGCCTTTGATGGCCGAATATGCAGCACCCACATGGGCCATACTAATTTCAGGGTTCTTCATGCTGCTTTCTGTTTCCCTCTCTATGTACTTGATATTCCAGCACCTTTCAGCATACAACAATCCAGAGGAACAGAAATTTGTTCTCGGTGTTATCTTGATGGTCCCTTGCTATGCAGTTGAGTCGTATGTTTCATTGGTAAATCCTGACACTAGCGTGTACTGTGGCATCCTGCGTGACGCCTATGAAGCATTTGCTATGTATTGCTTTGGAAGATATATTACTGCTTGTTTAGGTGGTGAAGAAAGGACAATTGCATTTTTGAAGAGGGAGGGTGGCGGAGATTCTGGGGAACCTCTTTTGCATGGTGCTTCTGAAAAAGGGATCATACACCATCACTTCCCTGTGAATTACATATTGAAACCATGGAGAATGGGTGTGAGGTTTTACCAGATTATCAAATTTGGTATATTTCAATATGTGATTATAAAGACCCTCACAGCTAGCCTATGCCTGATTCTTCAACCTTTTGGTGCATATTGTGATGGAGAATTCAATTTGAGATGCGGATACCCATACTTTGCCGCTGTCCTTAACTTCAGTCAATATTGGGCCCTATACTGTTTGGTGGAGTGGTACACGGCTACTAAGGACGAATTGGCACATATAAAGCCATTGGCAAAATTTCTTTCGTTCAAATCTATAGTATTTTTAACTTGGTGGCAGGGTATTATGATTGCTATCATGTATTCTTTGGGCTTGGTTAGAAGTCCGTTG GCACAGAGCTTGGAGTTAAAGTCAAGCATTCAA GATTTCAT CATTT GTATAGAGATGGGTATTGCTTCAGTTGTTCACCTATATGTGTTCCCTGCAAAGCCCTATTCGCTATTAGGTAATCATCGTTCACCTGAAAACATTTCAGTGCTAGGGGACTATGCCGCCACTGACCCTGTGGACCCTGATGAGATAAAAGATATTAGTCGGCCTACCAAATTGAGGCTTCCACAGTTGGAACCAGATGAGATAATTGTGACAAATGTTAAAGAGAGTGTTCGAGACTTTGTAATTGGCAGTGGAGAATATGTGATAAAAGATCTCAAATTCACGATGAAGCAAGCAGTGCGA CCAGTCGGGAAGCGCTTTGAGAAATTAATGAAGAAGAAGGGCAAGTTCGGGCAAAGCCGTGATGACAATTGGGTAAGTACCTCCACGCTACAGAGAGCAATCCATGGGATCGATGATCCTCTCATATGCGGGAGCTCTAGTGACAGTGGGATCGGTAGAGGAAAACGGCACCGCAGGGACGTAAGCTCAGCTGGTGTTGTGGACAGTTGGGAAGGCAGCGACCAGACATCAGATGGGTATGTCATACGGGGACGCCGCTGGGAAATCAAGAAATCATGATATTCTTTTGTACAGGAGCTACGGAATACAAGCTGGGTTGCTGACTCGCTGGTAAATTTTGGTGCTAGCGTACAGCTCCCGTAGAT T GCTTAGCTACTTGTGTGATTGATTGTTTGATACTGTACATGGTTTCTCGTTTTCTATCTATAGGTGCGGTCAGAGTATTGTAAGTGCAGAATTCCACAAATTGTGCCATGCTTCAAGGGGCCAAGTGTAATTGAGTTCCTTTACAGAAG TGCAAGGTATTGTACCAG ]
[+] EMBL AU056771 [ GTGTGAGGTTTTACCAGATTATCAAATTTGGTATATTTCAATATGTGATTATAAAGACCCTCACAGCTAGCCTATCCCTGATTCTTCAACCTTTTGGTGCATATTGTGATGGAGAATTCAATTTGAGATGCGGATACCCATACTTTGCCGCTGTCCTTAACTTCAGTCAATATTGGGCCCTATACTGTTTGGTGGAGTGGTACACGNCTACTAAGGACGAATTGGCACATATAAAGCCATTGGCAAAATTTCTTTCGTTCAAATCTATAGTATTTTTAACTTGGTGGCAGGGTATTATGATTGCTATCATGTATTCTTTGGGCTTGGTTAGAAGTCCGTTGTGCACAGAGCTTGGAGTTAAAGTCAAGCATTCAAGGATTTCATCCATTTGGTATAGAGATGGGTA TGCTTCAGTTGTTtca ]
[+] EMBL BM421938 [ AGCAACCAGTGCGACCCAGTTCGGAAGCGCTTTGAGAAATTAATGAAGAAGAA GGCAAGTTC GGC AAGCCGTGATGACAATTGGGTGAGTACCTCCACGCCACAGAGAGCAATCCATGGGATCGATGATCCTCTCATATGCGGGAGCTCTAGTGACAGTGGGATCGGTAGAGGAAAACGGCACCGCAGGGACGTAAGCTCAGCTGGTGTTGTGGACAGTTGGGAAGGCAGCGACCAGACATCAGATGGGTATGTCATACGGGGACGCCGCTGGGAAATCAAGAAATCATGATATTCTTTTGTACAGGAGCTACGGAATACGAGCTGGGTTGCTGACTCGCTGGTAAATTTTGGTGCTAGCGTACAGCTCCCGTAGATCTCGCTTAGCTACTTGTGTGATTGATTGTTTGATACTGTACATGGTTTCTCGTTTTCTATCTATAGGTGCGGTCAGAGTATTGTAAGTGCAGAATTCCAC AATTGTGCCATGCTTCAAGGGGCCAAGTGTAATTGAGTTCCTTTACAGAAGCNCCCAGGTATTGTACCAGAACACAAAAAA]
[+] EMBL AU056772 [ CAGTTGGGNAGGCAGCGACCAGACATCAGATGGGTATGTCATACGGGGACGCCGCTGGGAAATCAAGAAATCATGATATTCTTTTGTACAGGAGCTACGGAATACANGCTGGGTTGCTGACTCGCTGGTAAATTTTGGTGCTAGCGTACAGCTCCCGTAGAT T GNTTAGCTACTTGTGTGATTGATTGTTTGATACTGTACATGGTTTCTCGTTTTNTATNTATAGGTGCGGTCAGAGTATTGTAAGTGCAGAATTCCACAAATTGTGCCATGCTTCAAGGGGCCAAGTGTAATTGAGTTCCTTTACAGAAG TGCAAGGTATTGTACCAGAAAAAAAAA ]
consensusID : consensus_8033#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence
[TGACTCGCTGTTCCGGTCAGAGTATTGTAAGTGCAGAATTCCACAAATTGTGCCATGCTTCAAGGGGCCAAGTGTAATTGAGTTCCTTTTACAGAAGTGCAAGGTATTGTACCAGAACACAAGTACACAACTCCCTCTGTAATTTCGTGAAAGTCGCTGACACGAACTGGATGTACGCCAAGGGAGGACACTTCATGTGCACTCGGCAGCACCAAACTTACCAAATACCAAAACCCTCAGAAAGTTGGAGAAAAAAAAATCTCTTAACAGAAATAATGGTTTCATCACGGTCGTCAAAATATCAGATGAATGCATGACTCATTTGCCTGTGCAAGGAGAGAGGGAGGCAAGATTTCAGTGGACAATTGTTCCTGTCTGATTTGTTGAATTTTGTTAGCAGAATTTATTTTGCTCTCTGGAATTGTTTATAGCTCTTGGGAAGNACTCCATGGAGAAGTAACCATGAGGTACTCCCTAGAATATACTAGGGAGTATATACCTCCCTATTAAACCGGAAAAATACTAAATACTACGCCACGAACTGCATTCAAAAA]
[+] EMBL BQ907835 [TGACTCGCTGTTCCGGTCAGAGTATTGTAAGTGCAGAATTCCACAAATTGTGCCATGCTTCAAGGGGCCAAGTGTAATTGAGTTCCTTTTACAGAAGTGCAAGGTATTGTACCAGAACACAAGTACACAACTCCCTCTGTAATTTCGTGAAAGTCGCTGACACGAACTGGATGTACGCCAAGGGAGGACACTTCATGTGCACTCGGCAGCACCAAACTTACCAAATACCAAAACCCTCAGAAAGTTGGAGAAAAAAAAATCTCTTAACAGAAATAATGGTTTCATCACGGTCGTCAAAATATCAGATGAATGCATGACTCATTTGCCTGTGCAAGGAGAGAGGGAGGCAAGATTTCAGTGGACAATTGTTCCTGTCTGATTTGTTGAATTTTGTTAGCAGAATTTATTTTGCTCTCTGGAATTGTTTATAGCTCTTGGGAAGNACTCCATGGAGAAGTAACCATGAGGTACTCCCTAGAATATACTAGGGAGTATATACCTCCCTATTAAACCGGAAAAATACTAAATACTACGCCACGAACTGCATTCAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8033#0 CGCGTTTCGGCTGGCCCACGACACCGCCGACGCGCGACGAACGCCGCCGCGCCGCCGCCC 60
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 CCAAACCCCCAAACTGCTCCGGCGATCGTCGAACTGGCCACGCCGCCCACGCCAGTTCGC 120
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 GCTCACCTGCCCAGATAGTAAACTATTTGGGTTGGGAATTTGATTCATATGGTGGCAGCA 180
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 TTGGGTTATTTGTATATGATACCAAGCCCATTCAATTGAAATGCTCCGCCTTATGGTTAA 240
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 GGAGACTATATGATGTTGAGTCCTTATAAGTTTATTGGACTTCAAGGAAGTGTTACCAGC 300
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 TGTCATGAGGGTCAATCCTGCGCTCTTCCTGCCTTTGATGGCCGAATATGCAGCACCCAC 360
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 ATGGGCCATACTAATTTCAGGGTTCTTCATGCTGCTTTCTGTTTCCCTCTCTATGTACTT 420
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 GATATTCCAGCACCTTTCAGCATACAACAATCCAGAGGAACAGAAATTTGTTCTCGGTGT 480
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 TATCTTGATGGTCCCTTGCTATGCAGTTGAGTCGTATGTTTCATTGGTAAATCCTGACAC 540
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 TAGCGTGTACTGTGGCATCCTGCGTGACGCCTATGAAGCATTTGCTATGTATTGCTTTGG 600
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 AAGATATATTACTGCTTGTTTAGGTGGTGAAGAAAGGACAATTGCATTTTTGAAGAGGGA 660
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 GGGTGGCGGAGATTCTGGGGAACCTCTTTTGCATGGTGCTTCTGAAAAAGGGATCATACA 720
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 CCATCACTTCCCTGTGAATTACATATTGAAACCATGGAGAATGGGTGTGAGGTTTTACCA 780
consensus_8033#1 --------------TGACTCGCTGTTCCGGTCAGAGTATTGTAAGTGCAGAATTCCAC-A 45
*** * * * * * * * *** ** ** *
consensus_8033#0 GATTATCAAATTTGGTATATTTCAATATGTGATTATAAAGACCCTCACAGCTAGCCTATG 840
consensus_8033#1 AATTGTGCCATGCTTCAAGGGGCCAAGTGTAATTG-AGTTCCTTTTACAGAAGTGCAAGG 104
*** * ** * * * *** *** * * * **** * * *
consensus_8033#0 CCTGATTCTTCAACCTTTTGGTGCATATTGTGATGGAGAATTCAATTTGAGATGCGGATA 900
consensus_8033#1 TATTGTACCAGAACACA--AGTACACAACTCCCTCTGTAATTTCGTGAAAGTCGCTGACA 162
* * * *** ** ** * * **** * ** ** ** *
consensus_8033#0 CCCATACTTTGCCGCTGTCCTTAACTTCAGTCAATATTGGGCCCTATACTGTTTGGTGGA 960
consensus_8033#1 CGAA---------------CTGGATGTACGCCAAGGGAGGACACTTCA-TGTGCACTCGG 206
* * ** * * * *** ** * ** * *** * *
consensus_8033#0 GTGGTACACGGCTACTAAGGACGAATTGGCACATATAAAGCCATTGGCAAAATTTCTTTC 1020
consensus_8033#1 CAGCACCAAACTTACCAAATACCAA--AACCCTCAGAAAGTTGGAGAAAAAAAAATCTC- 263
* ** *** ** ** ** * * * **** * **** *
consensus_8033#0 GTTCAAATCTATAGTATTTTTAACTTGGTGG-CAGGGTATTATGATTGCTATCATGTATT 1079
consensus_8033#1 -TTAACAGAAATAATGGTTTCATCACGGTCGTCAAAATATCA-GATGAATG-CATG-ACT 319
** * * *** * *** * * *** * ** *** * *** * **** * *
consensus_8033#0 CTTTGGGCTTGGTTAGAAGTCCGTTGGCACAGAGCTTGGAGTTAAAGTCAAGCATTCAAG 1139
consensus_8033#1 CATTTGCCTGTGCAAGGAGAGAGGGAG-GCAAGATTTCAGTGGACAATTGTTCCTGTCTG 378
* ** * ** * ** ** * * ** ** * * * * * *
consensus_8033#0 ATTTCATCATTTGTATAGAGATGGGTATTGCTTCAGTTGTTCACCTATATGTGTTCCCTG 1199
consensus_8033#1 ATTTGTTGAATTTTGTTAGCA-GAATTTATTTTGCTCTCTGGAATTGTTTATAGCTCTTG 437
**** * * ** * * * * * * ** * * * * * * * * **
consensus_8033#0 CAAAGCCCTATTCGCTATTAGGTAATCATC--GTTCACCTGAAAACATTTCAGTGCTAGG 1257
consensus_8033#1 GGAAGNAC--TCCATGGAGAAGTAACCATGAGGTACTCCCTAGAATATACTAG-----GG 490
*** * * * * **** *** ** * ** * ** ** ** **
consensus_8033#0 GGACTATGCCGCCACTGACCCTGTGGACCCTGATGAGATAAAAGATATTAGTCGGCCTAC 1317
consensus_8033#1 AGTATATACCTCC-------CTATTAAACCGGA-AAAATACTAAATACTACGCCACGAAC 542
* *** ** ** ** * * ** ** * *** * *** ** * * **
consensus_8033#0 CAAATTGAGGCTTCCACAGTTGGAACCAGATGAGATAATTGTGACAAATGTTAAAGAGAG 1377
consensus_8033#1 TGCATTCAAAAA------------------------------------------------ 554
*** *
consensus_8033#0 TGTTCGAGACTTTGTAATTGGCAGTGGAGAATATGTGATAAAAGATCTCAAATTCACGAT 1437
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 GAAGCAAGCAGTGCGACCAGTCGGGAAGCGCTTTGAGAAATTAATGAAGAAGAAGGGCAA 1497
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 GTTCGGGCAAAGCCGTGATGACAATTGGGTAAGTACCTCCACGCTACAGAGAGCAATCCA 1557
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 TGGGATCGATGATCCTCTCATATGCGGGAGCTCTAGTGACAGTGGGATCGGTAGAGGAAA 1617
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 ACGGCACCGCAGGGACGTAAGCTCAGCTGGTGTTGTGGACAGTTGGGAAGGCAGCGACCA 1677
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 GACATCAGATGGGTATGTCATACGGGGACGCCGCTGGGAAATCAAGAAATCATGATATTC 1737
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 TTTTGTACAGGAGCTACGGAATACAAGCTGGGTTGCTGACTCGCTGGTAAATTTTGGTGC 1797
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 TAGCGTACAGCTCCCGTAGATTGCTTAGCTACTTGTGTGATTGATTGTTTGATACTGTAC 1857
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 ATGGTTTCTCGTTTTCTATCTATAGGTGCGGTCAGAGTATTGTAAGTGCAGAATTCCACA 1917
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 AATTGTGCCATGCTTCAAGGGGCCAAGTGTAATTGAGTTCCTTTACAGAAGTGCAAGGTA 1977
consensus_8033#1 ------------------------------------------------------------
consensus_8033#0 TTGTACCAGAACACAAAAAA 1997
consensus_8033#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||