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Oryza sativa
cluster # 8038 cluster # 8038       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8038#0 length = 2208 sequences # 5  

consensusID : consensus_8038#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2208
fasta sequence
                              [ATATGTAATTTGTTGAGAAGGTCTTCTTCAAGTAGTAGAGTTTCAAAAGTTACCAACAAATCTTCTTTCGGTGGTTGTGCTCCTCTGAAGAATGGTGAATTCCAGAAGATGTTGGAAATGGAATCTCAAAAAACTATAGTCATAAACTATACTGATGTGGATATTCCTGTAATAGAAGAGACAAAACCTCTTATATGTGGAATCACTGAATTCGATGACGTTTTGAAGGAGCAAGAACTTTCCACTAAGGAGATTGCAATGTATGGGTTGTATCTTTGTCCCATATGGTTTGTGACGGAGTACTTGTCAAATGCGGCACTTGCAAGAACTAGTGTTGCTAGTACTACTGTACTATCTTCAACGTCAGGACTCTTCACTCTTTTCATTGGTGTGCTACTTGGCCAAGATTCTATAAATGCTGCAAAAGTTATTGCTGTTTTTATTAGCATGGCTGGTGTGGTAATGACAACCATGGGGCAGACTTGGGCATCAGATGAATCAGAAATCAGCAATTCTGGTGCCACTCAGAGAACTCTTCTAGGTGACATGTTTGGTCTTCTGTCAGCTATGTCATATGGTTTATTCACTGTGCTTCTAAAAAAGTTTGCTGGAGAGGAAGGAGAAAAGGTTGATGTCCAAAAACTGTTTGGCTACCTCGGACTTTTCAGTCTTGTTCTTCTCTGGTGGCTTGTCTGGCCATTGACCGCATTAGGCATTGAACCAAAGTTTACAATACCCCACTCAGCCAAAGTGGATGAAGTGGTGTTGGCAAATGGCCTTATTGGAAGTGTATTGTCAGACTACTTCTGGGCTCTTTCTGTTGTTTGGACTACTCCTTTGGTGGCCACCTTGGGCATGTCACTCACAATTCCACTAGCAATGGTGGCTGATATGATCATTCATGGTCGTCGTTATTCAGCGGTCTATATCTTTGGTTCTGTCCAGGTATTTTCTGGGTTTGTCATTGCAAATCTTGCGGATCGCTTTTCACGTTTTCTAGGGCTCTAGTGTCACGAAATCAACCAGGTTTTATTAGAGTGTACATCTGTGTGGATCGTTAGACAAATACCCTTGTTTCATAAGATTGCGAAAATGTTACTGTAGTTTTTTTTTTCTCTTGGCCCTTTACACA-CAGGAATGGAAAATTTTTGTGGCGGTGAAATAGAAAAGAGTGACTTGAAGAAACTTTATGCTGTAGCAACCCTTGCAACTGTAAATTCTTTTGCTATAAAATCCTTCTCAATGTATACTACTGTAGCTTCCTACAGTAGACTTGCATATATTAAAAAATATGTCTTTGTCCCCTTGACTCATTGTGGAACATTTACAAGTCCTGCAACCGAGAAGAAAGTACGTACAAAATGGCCTTTTGGAAAATAAAAGGTCAAAGGTGATTCTGGTGCCGTTACAAGCTTGGCTTTACTGTTACAGAGTGAAAGTCAACACCCGGCTGTAGTTATCGGCGTTGGATTGGAGACGATGGACGGCGAAGTTGTCCGGCGAAAAAGACGATAGACGGCGAAGTCGGCGGCCTGCTCGGGGTCGCGCAGCAGCGGCCTAGTGACCCTGTCTACCTCGACCACCTCGAAGCCTTGCTCTCGCAGCACGTCGATACAGTCCTGCACGCCGTCGCGCGCCTCGCTCGCCGCCCACCCCACCGTGCCGCCGCCGTCGCTGTCGCTGTCGCCGTCTCGCCATAGCCCATGCAGCGTGTCCGCCATCGCCGGCATGTCGTCCGGGTCGTAGAACACGTCGGACATGAGCACCACGTCCACCTGGACCTCGGGCTCGAGGTGCCCACCCCACCGGAGCTCACGCACGTCCGCCTGCTCGGCGGTGAGCCCGTTGGCGTCGGCGTTGGCCCTGAGGCCGGGGAGGAGCGGGCGCACGTCGGTGAGCACGCAGCGCGCGGCGCCGAGGCAGGCGACGGCGGCGATGCCCGGGAGGCCCGTGCCGGCGCCGAGCTCGAGGACGGTGGCGCCACGGAGGTGGTGGTGGTGGACGCAGGACGCGAGGTGGGAGGCGAGGACGAGGGAGGAGTCCCAGAGCCATGAGCCGGTGAGCGCGCGCCCCGTGGCCGGGTCGTGCGTGCCGTCGCGCTCAGCCACGGCCAGCGTGCGCCCGGCCACGGCTACGTGCAGCGCGGCGTCCATAATCTCGGTGGCTACCACCTCCATCATCTCCATGGCATTCTAACCTTCATATGCT]

[+] EMBL AK100006             [ATATGTAATTTGTTGAGAAGGTCTTCTTCAAGTAGTAGAGTTTCAAAAGTTACCAACAAATCTTCTTTCGGTGGTTGTGCTCCTCTGAAGAATGGTGAATTCCAGAAGATGTTGGAAATGGAATCTCAAAAAACTATAGTCATAAACTATACTGATGTGGATATTCCTGTAATAGAAGAGACAAAACCTCTTATATGTGGAATCACTGAATTCGATGACGTTTTGAAGGAGCAAGAACTTTCCACTAAGGAGATTGCAATGTATGGGTTGTATCTTTGTCCCATATGGTTTGTGACGGAGTACTTGTCAAATGCGGCACTTGCAAGAACTAGTGTTGCTAGTACTACTGTACTATCTTCAACGTCAGGACTCTTCACTCTTTTCATTGGTGTGCTACTTGGCCAAGATTCTATAAATGCTGCAAAAGTTATTGCTGTTTTTATTAGCATGGCTGGTGTGGTAATGACAACCATGGGGCAGACTTGGGCATCAGATGAATCAGAAATCAGCAATTCTGGTGCCACTCAGAGAACTCTTCTAGGTGACATGTTTGGTCTTCTGTCAGCTATGTCATATGGTTTATTCACTGTGCTTCTAAAAAAGTTTGCTGGAGAGGAAGGAGAAAAGGTTGATGTCCAAAAACTGTTTGGCTACCTCGGACTTTTCAGCCTTGTTCTTCTCTGGTGGCTTGTCTGGCCATTGACCGCATTAGGCATTGAACCAAAGTTTACAATACCCCACTCAGCCAAAGTGGATGAAGTGGTGTTGGCAAATGGCCTTATTGGAAGTGTATTGTCAGACTACTTCTGGGCTCTTTCTGTTGTTTGGACTACTCCTTTGGTGGCCACCTTGGGCATGTCACTCACAATTCCACTAGCAATGGTGGCTGATATGATCATTCATGGTCGTCGTTATTCAGCGGTCTATATCTTTGGTTCTGTCCAGGTATTTTCTGGGTTTGTCATTGCAAATCTTGCGGATCGCTTTTCACGTTTTCTAGGGCTCTAGTGTCACGAAATCAACCAGGTTTTATTAGAGTGTACATCTGTGTGGATCGTTAGACAAATACCCTTGTTTCATAAGATTGCGAAAATGTTACTGTAGTTTTTTTTTTCTCTTGGCCCTTTACACA CAGGAATGGAAAATTTTTGTGGCGGTGAAATAGAAAAGAGTGACTTGAAGAAACTTTATGCTGTAGCAACCCTTGCAACTGTAAATTCTTTTGCTATAAAATCCTTCTCAATGTATACTACTGTAGCTTCCTACAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB685063             [                                                                                                                                                                                              TTATCTTTGGAATCACTGAATTCGATGACGTTTTGAAGGAGCAAGAACTTTCCACTAAGGAGATTGCAATGTATGGCTTGTATCTTTGTCCCATATGGTTTGTGACGGAGTACTTGTCAAATGCGGCACTTGCAAGAACTAGTGTTGCTAGTACTACTGTACTATCTTCAACGTCAGGACTCTTCACTCTTTTCATTGGTGTGCTACTTGGCCAAGATTCTATAAATGCTGCAAAAGTTATTGCTGTTTTTATTAGCATGGCTGGTGTGGTAATGACAACCATGGGGCAGACTTGGGCATCAGATGAATCAGAAATCAGCAATTCTGGTGCCACTCAGAGAACTCTTCTAGGTGACATGTTTGGTCTTCTGTCAGCTATGTCATATGGTTTATTCACTGTGCTTCTAAAAAAGTTTGCTGGAGAGGAAGGAGAAAAGGTTGATGTCCAAAAACTGTTTGGCTACCTCGGACTTTTCAGTCTTGTTCTTCTCTGGTGGCTTGTCTGGCCATTGACCGCATTAGGCATTGAACCAAAGTTTACAATACCCCACTCAGCCAAAGTGGATGAAGTGGTGTTGGCAAATGGCCTTATTGGAAGTGTATTGTCAGACTACTTCTGGGCTCTTTCTGTTGTTTGGACTACTCCTTTGGTGGCCACCTTGGGCATGTCACTCACAATTCCACTAGCAATGGTGGCTGATATGATCATTCATGGTCGTCGTTATTCAGCGGGCTATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB685064             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTGCTTCTAAAAAAGTTTGGTGGAGAGGAAGGAGAAAAGGTTGATGTCCAAAAACTGTTTGGCTACCTCGGACTTTTCAGTCTTGTTCTTCTCTGGTGGCTTGTCTGGCCATTGACCGCATTAGGCATTGAACCAAAGTTTACAATACCCCACTCAGCCAAAGTGGATGAAGTGGTGTTGGCAAATGGCCTTATTGGAAGTGTATTGTCAGACTACTTCTGGGCTCTTTCTGTTGTTTGGACTACTCCTTTGGTGGCCACCTTGGGCATGTCACTCACAATTCCACTAGCAATGGTGGCTGATATGATCATTCATGGTCGTCGTTATTCAGCGGTCTATATCTTTGGTTCTGTCCAGGTATTTTTTGGGTTTGTCATTGCAAATCTTGCGGATCGCTTTTCACGTTTTCTAGGGCTATAGTGTCACGAAATCAACCAGGTTTTATTAGAGTGTACATCTGTGTGGATCGTTAGACAAATACCCTTGTTTCATAAGATTGCGAAAATGTTACTGTAGTTTTTTTTTTCTCTTGGCCCTTTACACA CAGGAATGGAAAATTTTTGTGGCGGTGAAATAGAAAAGAGTGACTTGAAGAAACTTTATGCTGTAGCAACCCTTGCAACTGTAAATTCTTTTGCTATAAAATCCTTCTCAATGTATACAAGTGTAGCTTCCTACAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BI805145             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATATCTTTGGTTCTGTCCAGGTATTTTCTGGGTTTGTCATTGCAAATCTTGCGGATCGCTTTTCACGTTTTCTAGGGCTCTAGTGTCACGAAATCAACCAGGTTTTATTAGAGTGTACATCTGTGTGGATCGTTAGACAAATACCCTTGTTTCATAAGATTGCGAAAATGTTACTGTAGTTTTTTTTTTCTCTTGGCCCTTTACACACCAGGAATGGAAAATTTTTGTGGCGGTGAAATAGAAAAGAGTGACTTGAAGAAACTTTATGCTGTAGC ACCCTTGCAACTGTAAATTCTTTTGCTATAAAATCCTTCTCAATGTATACTACTGTAGCTTCCTACAGTAGACTTGCATATATTAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL AK062761             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCTTCTCAATGTATACTACTGTAGCTTCCTACAGTAGACTTGCATATATTAATTGCTATGTCTTTGTCCCCTTGACTCATTGTGGAACATTTACAAGTCCTGCAACCGAGAAGAAAGTACGTACAAAATGGCCTTTTGGAAAATAAAAGGTCAAAGGTGATTCTGGTGCCGTTACAAGCTTGGCTTTACTGTTACAGAGTGAAAGTCAACACCCGGCTGTAGTTATCGGCGTTGGATTGGAGACGATGGACGGCGAAGTTGTCCGGCGAAAAAGACGATAGACGGCGAAGTCGGCGGCCTGCTCGGGGTCGCGCAGCAGCGGCCTAGTGACCCTGTCTACCTCGACCACCTCGAAGCCTTGCTCTCGCAGCACGTCGATACAGTCCTGCACGCCGTCGCGCGCCTCGCTCGCCGCCCACCCCACCGTGCCGCCGCCGTCGCTGTCGCTGTCGCCGTCTCGCCATAGCCCATGCAGCGTGTCCGCCATCGCCGGCATGTCGTCCGGGTCGTAGAACACGTCGGACATGAGCACCACGTCCACCTGGACCTCGGGCTCGAGGTGCCCACCCCACCGGAGCTCACGCACGTCCGCCTGCTCGGCGGTGAGCCCGTTGGCGTCGGCGTTGGCCCTGAGGCCGGGGAGGAGCGGGCGCACGTCGGTGAGCACGCAGCGCGCGGCGCCGAGGCAGGCGACGGCGGCGATGCCCGGGAGGCCCGTGCCGGCGCCGAGCTCGAGGACGGTGGCGCCACGGAGGTGGTGGTGGTGGACGCAGGACGCGAGGTGGGAGGCGAGGACGAGGGAGGAGTCCCAGAGCCATGAGCCGGTGAGCGCGCGCCCCGTGGCCGGGTCGTGCGTGCCGTCGCGCTCAGCCACGGCCAGCGTGCGCCCGGCCACGGCTACGTGCAGCGCGGCGTCCATAATCTCGGTGGCTACCACCTCCATCATCTCCATGGCATTCTAACCTTCATATGCT]


>consensus_8038#0 ATATGTAATTTGTTGAGAAGGTCTTCTTCAAGTAGTAGAGTTTCAAAAGTTACCAACAAA TCTTCTTTCGGTGGTTGTGCTCCTCTGAAGAATGGTGAATTCCAGAAGATGTTGGAAATG GAATCTCAAAAAACTATAGTCATAAACTATACTGATGTGGATATTCCTGTAATAGAAGAG ACAAAACCTCTTATATGTGGAATCACTGAATTCGATGACGTTTTGAAGGAGCAAGAACTT TCCACTAAGGAGATTGCAATGTATGGGTTGTATCTTTGTCCCATATGGTTTGTGACGGAG TACTTGTCAAATGCGGCACTTGCAAGAACTAGTGTTGCTAGTACTACTGTACTATCTTCA ACGTCAGGACTCTTCACTCTTTTCATTGGTGTGCTACTTGGCCAAGATTCTATAAATGCT GCAAAAGTTATTGCTGTTTTTATTAGCATGGCTGGTGTGGTAATGACAACCATGGGGCAG ACTTGGGCATCAGATGAATCAGAAATCAGCAATTCTGGTGCCACTCAGAGAACTCTTCTA GGTGACATGTTTGGTCTTCTGTCAGCTATGTCATATGGTTTATTCACTGTGCTTCTAAAA AAGTTTGCTGGAGAGGAAGGAGAAAAGGTTGATGTCCAAAAACTGTTTGGCTACCTCGGA CTTTTCAGTCTTGTTCTTCTCTGGTGGCTTGTCTGGCCATTGACCGCATTAGGCATTGAA CCAAAGTTTACAATACCCCACTCAGCCAAAGTGGATGAAGTGGTGTTGGCAAATGGCCTT ATTGGAAGTGTATTGTCAGACTACTTCTGGGCTCTTTCTGTTGTTTGGACTACTCCTTTG GTGGCCACCTTGGGCATGTCACTCACAATTCCACTAGCAATGGTGGCTGATATGATCATT CATGGTCGTCGTTATTCAGCGGTCTATATCTTTGGTTCTGTCCAGGTATTTTCTGGGTTT GTCATTGCAAATCTTGCGGATCGCTTTTCACGTTTTCTAGGGCTCTAGTGTCACGAAATC AACCAGGTTTTATTAGAGTGTACATCTGTGTGGATCGTTAGACAAATACCCTTGTTTCAT AAGATTGCGAAAATGTTACTGTAGTTTTTTTTTTCTCTTGGCCCTTTACACACAGGAATG GAAAATTTTTGTGGCGGTGAAATAGAAAAGAGTGACTTGAAGAAACTTTATGCTGTAGCA ACCCTTGCAACTGTAAATTCTTTTGCTATAAAATCCTTCTCAATGTATACTACTGTAGCT TCCTACAGTAGACTTGCATATATTAAAAAATATGTCTTTGTCCCCTTGACTCATTGTGGA ACATTTACAAGTCCTGCAACCGAGAAGAAAGTACGTACAAAATGGCCTTTTGGAAAATAA AAGGTCAAAGGTGATTCTGGTGCCGTTACAAGCTTGGCTTTACTGTTACAGAGTGAAAGT CAACACCCGGCTGTAGTTATCGGCGTTGGATTGGAGACGATGGACGGCGAAGTTGTCCGG CGAAAAAGACGATAGACGGCGAAGTCGGCGGCCTGCTCGGGGTCGCGCAGCAGCGGCCTA GTGACCCTGTCTACCTCGACCACCTCGAAGCCTTGCTCTCGCAGCACGTCGATACAGTCC TGCACGCCGTCGCGCGCCTCGCTCGCCGCCCACCCCACCGTGCCGCCGCCGTCGCTGTCG CTGTCGCCGTCTCGCCATAGCCCATGCAGCGTGTCCGCCATCGCCGGCATGTCGTCCGGG TCGTAGAACACGTCGGACATGAGCACCACGTCCACCTGGACCTCGGGCTCGAGGTGCCCA CCCCACCGGAGCTCACGCACGTCCGCCTGCTCGGCGGTGAGCCCGTTGGCGTCGGCGTTG GCCCTGAGGCCGGGGAGGAGCGGGCGCACGTCGGTGAGCACGCAGCGCGCGGCGCCGAGG CAGGCGACGGCGGCGATGCCCGGGAGGCCCGTGCCGGCGCCGAGCTCGAGGACGGTGGCG CCACGGAGGTGGTGGTGGTGGACGCAGGACGCGAGGTGGGAGGCGAGGACGAGGGAGGAG TCCCAGAGCCATGAGCCGGTGAGCGCGCGCCCCGTGGCCGGGTCGTGCGTGCCGTCGCGC TCAGCCACGGCCAGCGTGCGCCCGGCCACGGCTACGTGCAGCGCGGCGTCCATAATCTCG GTGGCTACCACCTCCATCATCTCCATGGCATTCTAACCTTCATATGCT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)