These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8048#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1013 fasta sequence [TCCTGGACTGTTAATCCCAGTAACAACTATATATGACACAAGATATGGGGAGATTGAGGAAAAGCAAAGTGAACTGAGAAGAAATCTGCACTTACGGCTACAACTTCCCTTAGATCGTCCTTTATTACGAATTTCAAATGCACTAAATTTTTCCATAGGAGGGACAGATAAGAAAGCATCAAAAAGTNGTTCATCATTGCTTCGGGATGTCCACAGAGAGATTCCATCTAGCGGTGTATCTGGAGGAATTATATCATTGATTGATGGTTCCTATGAGTACTACCATTACCTTCATGATGGTATTGATGATAATGGATGGGGATGTGCTTATCGTTCTCTACAAACTATCATGTCTTGGTACAGATTGCAACAGTATTCATCTATAAATGTTCCATCACACAGGGAGATTCAGCAAGTCCTTGTTGAAATCGGTGACAAGGNTCCATCATTTATTGGATCTCGAGAGTGGATTGGAGCAATTGAACTAAGCTTTGTCCTTGACAAACTGCTTGGAGTTAGTTGCAAGGTTATTAATGTGAGATCTGGTGATGAACTTCCTGAGAAATGCAGAGAACTTGCAATCCATTTTGAAACCCAGGGAACTCCTGTGATGATTGGTGGTGGAGTCTTGGCTTACACCCTTTTAGGAGTTGACTACAACGAATCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATACTGGTGCTGATGATCTCAAGAAGATCGTGAATGGTGGATGGTGTGGGTGGAAGAAATCCATCGACAGCAAAGGCCGTAGCTTCTTCCTGAAAGACAAGTTCTACAACCTTCTGCTACCCCAAAGGCCTAATATGGTGTAAAAACTGCATCGCTATGACACCTCTATGGATCAAAGAGAGTGGTTTGTACATCGCTATGAAGAGAGCTTCTTGATCAGTGTAAAAACTTGCTAAGCAAACTATTTTTCGCTGTCGGAGCCTGGAGGGTACATCTTATCTTGCATGGAGAAACTAACACAAAAAAAGG] [+] EMBL C28569 [TCCTGGACTGTTAATCCCAGTAACAACTATATATGACACAAGATATGGGGAGATTGAGGAAAAGCAAAGTGAACTGAGAAGAAATCTGCACTTACGGCTACAACTTCCCTTAGATCGTCCTTTATTACGAATTTCAAATGCACTAAATTTTTCCATAGGAGGGACAGATAAGAAAGCATCAAAAAGTNGTTCATCATTGCTTCGGGATGTCCACAGAGAGATTCCATCTAGCGGTGTATCTGGAGGAATTATATCATTGATTGATGGTTCCTATGAGTACTACCATTACCTTCATGATGGTATTGATGATAATGGATGGGGATGTGCTTATCGTTCTCTACAAACTATCATGTCTTGGTACAGATTGCAACAGTATTCATCTATAAATGTTCCATCACACAGGGAGATTCAGCAAGTCCTTGTTGAAATCGGTGACAAGGN ] [-] EMBL CB681760 [ ATTGATGATAATGGATGGGGATGTGCTTATCGTTCTCTACAAACTATCATGTCTTGGTACAGATTGCAACAGTATTCATCTATAAATGTTCCATCACACAGGGAGATTCAGCAAGTCCTTGTTGAAATCGGTGACAAGGATCCATCATTTATTGGATCTCGAGAGTGGATTGGAGCAATTGAACTAAGCTTTGTCCTTGACAAACTGCTTGGAGTTAGTTGCAAGGTTATTAATGTGAGATCTGGTGATGAACTTCCTGAGAAATGCAGAGAACTTGCAATCCATTTTGAAACCCAGGGAACTCCTGTGATGATTGGTGGTGGAGTCTTGGCTTACACCCTTTTAGGAGTTGACTACAACGAATCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATACTGGTGCTGATGATCTCAAGAAGATCGTGAATGGTGGATGGTGTGGGTGGAAGAAATCCATCGACAGCAAAGGCCGTAGCTTCTTCCTGAAAGACAAGTTCTACAACCTTCTGCTACCCCAAAGGCCTAATATGGTGTAAAAACTGCATCGCTATGACACCTCTATGGATCAAAGAGAGTGGTTTGTACATCGCTATGAAGAGAGCTTCTTGATCAGTGTAAAAACTTGCTAAGCAAACTATTTTTCGCTGTCGGAGCCTGGAGGGTACATCTTATCTTGCATGGAGAAACTAACACAAAAAAAGG] consensusID : consensus_8048#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 822 fasta sequence [CGAGACAAGGGGGATTGATGGTTCCTATGAGTACTACCATTACCTTCATGATGGTATTGATGATAATGGATGGGGATGTGCTTATCGTTCTCTACAAACTATCATGTCTTGGTACAGATTGCAACAGTATTCATCTATAAATGTTCCATCACACAGGGAGATTCAGCAAGTCCTTGTTGAAATCGGTGACAAGGATCCATCATTTATTGGATCTCGAGAGTGGATTGGAGCAATTGAACTAAGCTTTGTCCTTGACAAACTGCTTGGAGTTAGTTGCAAGGTTATTAATGTGAGATCTGGTGATGAACTTCCTGAGAAATGCAGAGAACTTGCAATCCATTTTGAAACCCAGGGAACTCCTGTGATGATTGGTGGTGGAGTCTTGGCTTACACCCTTTTAGGAGTTGACTACAACGAAGCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATACTGGTGCTGATGATCTCAAGAAGATCGTGAATGGTGGATGGTGTGGGTGGAAGAAATCCATCGACAGCAAAGGCCGTAGCTTCTTCCCGAAAGACAAGTTCTACAACCTTCTGCTACCCCAAAGGCCTAATATGGTGTAAAAACTGCATCGCTATGACACCTCTATGGATCAAAGAGAGTGGNTTGTACATCGCTATGAAGAGAGCTTCTTGATCAGTGTAAAAACTTGCTAAGCAAACTATTTTTTCGCTGTCGGAGCCTGGNTTGTACATCTTATCTTTGCATGGAGAAACTAGAGCTACAGNTGNCGGCATGGTCCGGGATCTCATTGATGGTATAGGTTGAACCTTTATGGTTCTTT] [+] EMBL CA764242 [CGAGACAAGGGGGATTGATGGTTCCTATGAGTACTACCATTACCTTCATGATGGTATTGATGATAATGGATGGGGATGTGCTTATCGTTCTCTACAAACTATCATGTCTTGGTACAGATTGCAACAGTATTCATCTATAAATGTTCCATCACACAGGGAGATTCAGCAAGTCCTTGTTGAAATCGGTGACAAGGATCCATCATTTATTGGATCTCGAGAGTGGATTGGAGCAATTGAACTAAGCTTTGTCCTTGACAAACTGCTTGGAGTTAGTTGCAAGGTTATTAATGTGAGATCTGGTGATGAACTTCCTGAGAAATGCAGAGAACTTGCAATCCATTTTGAAACCCAGGGAACTCCTGTGATGATTGGTGGTGGAGTCTTGGCTTACACCCTTTTAGGAGTTGACTACAACGAAGCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATACTGGTGCTGATGATCTCAAGAAGATCGTGAATGGTGGATGGTGTGGGTGGAAGAAATCCATCGACAGCAAAGGCCGTAGCTTCTTCCCGAAAGACAAGTTCTACAACCTTCTGCTACCCCAAAGGCCTAATATGGTGTAAAAACTGCATCGCTATGACACCTCTATGGATCAAAGAGAGTGGNTTGTACATCGCTATGAAGAGAGCTTCTTGATCAGTGTAAAAACTTGCTAAGCAAACTATTTTTTCGCTGTCGGAGCCTGGNTTGTACATCTTATCTTTGCATGGAGAAACTAGAGCTACAGNTGNCGGCATGGTCCGGGATCTCATTGATGGTATAGGTTGAACCTTTATGGTTCTTT] [+] EMBL AU063440 [ GCTTACACCCTTTTAGGAGTTGACTACAACGAATCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATACTGGTGCTGATGATCTCAAGAAGATCGTGAATGGTGGATGGTGTGGGTGGAAGAAATCCATCGACAGCAAAGGCCGTAGCTTCTTCCTGAAAGACAAGTTCTACAACCTTCTGCTACCCCAAAGGCCTAATATGGTGTAAAAACTGCATCGCTATGACACCTCTATGGATCAAAGAGAGTGGTTTGTACATCGCTATGAAGAGAGCTTCTTGATCAGTGTAAAAACTTGCTAAGCAAACTA TTTTTCGCTGTCGGAGCCTGGTTTGTACATCTTATC TTGCATGGAGAAACTAGAGCTACAGTTGCCGGCAaaaaaa ] consensusID : consensus_8048#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence [TCATTGATTGATGGTTCCTATGAGTACTACCATTACCTTCATGATGGTATTGATGATAATGGATGGGGATGTGCTTATCGTTCTCTACAAACTATCATGTCTTGGTACAGATTGCAACAGTATTCATCTATAAATGTTCCATCACACAGGGAGATTCAGCAAGTCCTTGTTGAAATCGGTGACAAGGATCCATCATTTATTGGATCTCGAGAGTGGATTGGAGCAATTGAACTAAGCTTTGTCCTTGACAAACTGCTTGGAGTTAGTTGCAAGGTTATTAATGTGAGATCTGGTGATGAACTTCCTGAGAAATGCAGAGAACTTGCAATCCATTTTGAAACCCAGGGAACTCCTGTGATGATTGGTGGTGGAGTCTTGGCTTACACCCTTTTAGGAGTTGACTACAAGGAATCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATATTGGTGCTGATGATCTCAAGAAGATCGTGAATGGTGGATGGTGTGGGCGTCATATACCTGCACGCCCACGCGGCCGACGCGCCTCCGGGCAATGCCCGTGATCCGGCTTTTGGGTCGTCTTCCTCCCGGACTCGGATCCGGCCGGCTCGCTCCCCAAATGTTACAGACTTTCAATGAGGAAAATCTATTGTGATATTATCCTATCAATTTATGTGGTGCGCTTGTTGGGAGATGGGATGAACTGG] [-] EMBL CB681759 [TCATTGATTGATGGTTCCTATGAGTACTACCATTACCTTCATGATGGTATTGATGATAATGGATGGGGATGTGCTTATCGTTCTCTACAAACTATCATGTCTTGGTACAGATTGCAACAGTATTCATCTATAAATGTTCCATCACACAGGGAGATTCAGCAAGTCCTTGTTGAAATCGGTGACAAGGATCCATCATTTATTGGATCTCGAGAGTGGATTGGAGCAATTGAACTAAGCTTTGTCCTTGACAAACTGCTTGGAGTTAGTTGCAAGGTTATTAATGTGAGATCTGGTGATGAACTTCCTGAGAAATGCAGAGAACTTGCAATCCATTTTGAAACCCAGGGAACTCCTGTGATGATTGGTGGTGGAGTCTTGGCTTACACCCTTTTAGGAGTTGACTACAAGGAATCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATATTGGTGCTGATGATCTCAAGAAGATCGTGAATGGTGGATGGTGTGGGCGTCATATACCTGCACGCCCACGCGGCCGACGCGCCTCCGGGCAATGCCCGTGATCCGGCTTTTGGGTCGTCTTCCTCCCGGACTCGGATCCGGCCGGCTCGCTCCCCAAATGTTACAGACTTTCAATGAGGAAAATCTATTGTGATATTATCCTATCAATTTATGTGGTGCGCTTGTTGGGAGATGGGATGAACTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8048#0 TCCTGGACTGTTAATCCCAGTAACAACTATATATGACACAAGATATGGGGAGATTGAGGA 60 consensus_8048#1 ------------------------------------------------------------ consensus_8048#2 ------------------------------------------------------------ consensus_8048#0 AAAGCAAAGTGAACTGAGAAGAAATCTGCACTTACGGCTACAACTTCCCTTAGATCGTCC 120 consensus_8048#1 ------------------------------------------------------------ consensus_8048#2 ------------------------------------------------------------ consensus_8048#0 TTTATTACGAATTTCAAATGCACTAAATTTTTCCATAGGAGGGACAGATAAGAAAGCATC 180 consensus_8048#1 ------------------------------------------------------------ consensus_8048#2 ------------------------------------------------------------ consensus_8048#0 AAAAAGTNGTTCATCATTGCTTCGGGATGTCCACAGAGAGATTCCATCTAGCGGTGTATC 240 consensus_8048#1 ------------------------------------------------------------ consensus_8048#2 ------------------------------------------------------------ consensus_8048#0 TGGAGGAATTATATCATTGATTGATGGTTCCTATGAGTACTACCATTACCTTCATGATGG 300 consensus_8048#1 ------CGAGACAAGGGGGATTGATGGTTCCTATGAGTACTACCATTACCTTCATGATGG 54 consensus_8048#2 -------------TCATTGATTGATGGTTCCTATGAGTACTACCATTACCTTCATGATGG 47 ****************************************** consensus_8048#0 TATTGATGATAATGGATGGGGATGTGCTTATCGTTCTCTACAAACTATCATGTCTTGGTA 360 consensus_8048#1 TATTGATGATAATGGATGGGGATGTGCTTATCGTTCTCTACAAACTATCATGTCTTGGTA 114 consensus_8048#2 TATTGATGATAATGGATGGGGATGTGCTTATCGTTCTCTACAAACTATCATGTCTTGGTA 107 ************************************************************ consensus_8048#0 CAGATTGCAACAGTATTCATCTATAAATGTTCCATCACACAGGGAGATTCAGCAAGTCCT 420 consensus_8048#1 CAGATTGCAACAGTATTCATCTATAAATGTTCCATCACACAGGGAGATTCAGCAAGTCCT 174 consensus_8048#2 CAGATTGCAACAGTATTCATCTATAAATGTTCCATCACACAGGGAGATTCAGCAAGTCCT 167 ************************************************************ consensus_8048#0 TGTTGAAATCGGTGACAAGGNTCCATCATTTATTGGATCTCGAGAGTGGATTGGAGCAAT 480 consensus_8048#1 TGTTGAAATCGGTGACAAGGATCCATCATTTATTGGATCTCGAGAGTGGATTGGAGCAAT 234 consensus_8048#2 TGTTGAAATCGGTGACAAGGATCCATCATTTATTGGATCTCGAGAGTGGATTGGAGCAAT 227 ******************** *************************************** consensus_8048#0 TGAACTAAGCTTTGTCCTTGACAAACTGCTTGGAGTTAGTTGCAAGGTTATTAATGTGAG 540 consensus_8048#1 TGAACTAAGCTTTGTCCTTGACAAACTGCTTGGAGTTAGTTGCAAGGTTATTAATGTGAG 294 consensus_8048#2 TGAACTAAGCTTTGTCCTTGACAAACTGCTTGGAGTTAGTTGCAAGGTTATTAATGTGAG 287 ************************************************************ consensus_8048#0 ATCTGGTGATGAACTTCCTGAGAAATGCAGAGAACTTGCAATCCATTTTGAAACCCAGGG 600 consensus_8048#1 ATCTGGTGATGAACTTCCTGAGAAATGCAGAGAACTTGCAATCCATTTTGAAACCCAGGG 354 consensus_8048#2 ATCTGGTGATGAACTTCCTGAGAAATGCAGAGAACTTGCAATCCATTTTGAAACCCAGGG 347 ************************************************************ consensus_8048#0 AACTCCTGTGATGATTGGTGGTGGAGTCTTGGCTTACACCCTTTTAGGAGTTGACTACAA 660 consensus_8048#1 AACTCCTGTGATGATTGGTGGTGGAGTCTTGGCTTACACCCTTTTAGGAGTTGACTACAA 414 consensus_8048#2 AACTCCTGTGATGATTGGTGGTGGAGTCTTGGCTTACACCCTTTTAGGAGTTGACTACAA 407 ************************************************************ consensus_8048#0 CGAATCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATACTGGTGCTGATGA 720 consensus_8048#1 CGAAGCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATACTGGTGCTGATGA 474 consensus_8048#2 GGAATCCAGTGGTGATTGTGCTTTTCTCATCCTTGATCCACACTATATTGGTGCTGATGA 467 *** ****************************************** ************ consensus_8048#0 TCTCAAGAAGATCGTGAATGGTGGATGGTGTGGGTGGAAGAAATCCATCGACAGCAAAGG 780 consensus_8048#1 TCTCAAGAAGATCGTGAATGGTGGATGGTGTGGGTGGAAGAAATCCATCGACAGCAAAGG 534 consensus_8048#2 TCTCAAGAAGATCGTGAATGGTGGATGGTGTGGGCGTCATATACCTGCACGCCCACGCGG 527 ********************************** * * * * * * ** consensus_8048#0 CCGTAGCTTCTTCCTGAAAGACAAGTTCTACAACCTTCTGCTACCCCAAAGGCCTAATAT 840 consensus_8048#1 CCGTAGCTTCTTCCCGAAAGACAAGTTCTACAACCTTCTGCTACCCCAAAGGCCTAATAT 594 consensus_8048#2 CCGACGCGCCTCCGGGCAATGCCCGTGATCCGGCTTTTGGGTCGTCTTCCTCCCGGACTC 587 *** ** ** * * ** * ** * * * ** * * * ** * consensus_8048#0 GGTGTAAAAACTGCATCGCTATGACACCTCTATGGA---TCAAAGAGAGTGGTTTGTACA 897 consensus_8048#1 GGTGTAAAAACTGCATCGCTATGACACCTCTATGGA---TCAAAGAGAGTGGNTTGTACA 651 consensus_8048#2 GGATCCGG--CCGGCTCGCTCCCCAAATGTTACAGACTTTCAATGAGGAAAATCTAT--- 642 ** * * ***** * ** ** **** *** * * consensus_8048#0 TCGCTATGAAGAGAGCTTCTTGATCAGTGTAAAA-ACTTGCTAAGCAAACTATTTTT-CG 955 consensus_8048#1 TCGCTATGAAGAGAGCTTCTTGATCAGTGTAAAA-ACTTGCTAAGCAAACTATTTTTTCG 710 consensus_8048#2 ----TGTGATATTATCCTATCAATTTATGTGGTGCGCTTGTTGGGAGATGGGATGAACTG 698 * *** * * * * ** *** **** * * * * * consensus_8048#0 CTGTCGGAGCCTGGAGGGTACATCTTATCTT-GCATGGAGAAACTAACACAAAAAAAGG- 1013 consensus_8048#1 CTGTCGGAGCCTGGNTTGTACATCTTATCTTTGCATGGAGAAACTAGAGCTACAGNTGNC 770 consensus_8048#2 G----------------------------------------------------------- 699 consensus_8048#0 ---------------------------------------------------- consensus_8048#1 GGCATGGTCCGGGATCTCATTGATGGTATAGGTTGAACCTTTATGGTTCTTT 822 consensus_8048#2 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||